RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 NISCHQ9Y2I1 1504 aa28.64■■■□□ 2.17
CDK5RAP3-217ENST00000580287 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
CDK5RAP3-217ENST00000580287 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
CDK5RAP3-217ENST00000580287 ZCCHC6Q5VYS8 1495 aaKnown RBP23.99■■□□□ 1.43
CDK5RAP3-217ENST00000580287 ABCC9O60706 1549 aa23.96■■□□□ 1.43
CDK5RAP3-217ENST00000580287 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
CDK5RAP3-217ENST00000580287 DCAF1Q9Y4B6 1507 aa23.49■■□□□ 1.35
CDK5RAP3-217ENST00000580287 MYO15BQ96JP2 1530 aa23.22■■□□□ 1.31
CDK5RAP3-217ENST00000580287 NACADO15069 1562 aa23.22■■□□□ 1.31
CDK5RAP3-217ENST00000580287 SCRIBQ14160 1630 aa23.08■■□□□ 1.29
CDK5RAP3-217ENST00000580287 RB1CC1Q8TDY2 1594 aa23.07■■□□□ 1.28
CDK5RAP3-217ENST00000580287 PABPN1Q86U42 306 aaKnown RBP eCLIP22.72■■□□□ 1.232e-10■■□□□ 14.3
CDK5RAP3-217ENST00000580287 SUPT5HO00267 1087 aaKnown RBP22.7■■□□□ 1.22
CDK5RAP3-217ENST00000580287 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
CDK5RAP3-217ENST00000580287 BICRAQ9NZM4 1560 aa22.47■■□□□ 1.19
CDK5RAP3-217ENST00000580287 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
CDK5RAP3-217ENST00000580287 RSF1Q96T23 1441 aaPredicted RBP22.26■■□□□ 1.15
CDK5RAP3-217ENST00000580287 MROH2BQ7Z745 1585 aa22.21■■□□□ 1.15
CDK5RAP3-217ENST00000580287 BAZ1AQ9NRL2 1556 aaPredicted RBP22.06■■□□□ 1.12
CDK5RAP3-217ENST00000580287 SMARCA4P51532 1647 aa22■■□□□ 1.11
CDK5RAP3-217ENST00000580287 WIZO95785 1651 aa22■■□□□ 1.11
CDK5RAP3-217ENST00000580287 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
CDK5RAP3-217ENST00000580287 ATAD2BQ9ULI0 1458 aa21.74■■□□□ 1.07
CDK5RAP3-217ENST00000580287 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
CDK5RAP3-217ENST00000580287 PEG3Q9GZU2 1588 aa21.64■■□□□ 1.05
CDK5RAP3-217ENST00000580287 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
CDK5RAP3-217ENST00000580287 BAZ1BQ9UIG0 1483 aaKnown RBP21.6■■□□□ 1.05
CDK5RAP3-217ENST00000580287 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
CDK5RAP3-217ENST00000580287 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
CDK5RAP3-217ENST00000580287 CC2D2AQ9P2K1 1620 aa21.53■■□□□ 1.04
CDK5RAP3-217ENST00000580287 NCAPD3P42695 1498 aa21.52■■□□□ 1.04
CDK5RAP3-217ENST00000580287 DNAJC5BQ9UF47 199 aa21.41■■□□□ 1.02
CDK5RAP3-217ENST00000580287 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
CDK5RAP3-217ENST00000580287 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
CDK5RAP3-217ENST00000580287 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
CDK5RAP3-217ENST00000580287 CFTRP13569 1480 aa21.03■□□□□ 0.96
CDK5RAP3-217ENST00000580287 CADPSQ9ULU8 1353 aa21.03■□□□□ 0.96
CDK5RAP3-217ENST00000580287 FAM9AQ8IZU1 332 aaPredicted RBP21.02■□□□□ 0.96
CDK5RAP3-217ENST00000580287 NESP48681 1621 aa21.01■□□□□ 0.95
CDK5RAP3-217ENST00000580287 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
CDK5RAP3-217ENST00000580287 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
CDK5RAP3-217ENST00000580287 EHMT2Q96KQ7 1210 aa20.87■□□□□ 0.93
CDK5RAP3-217ENST00000580287 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
CDK5RAP3-217ENST00000580287 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
CDK5RAP3-217ENST00000580287 SOGA1O94964 1423 aa20.76■□□□□ 0.91
CDK5RAP3-217ENST00000580287 CUX1P39880 1505 aa20.74■□□□□ 0.91
CDK5RAP3-217ENST00000580287 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
CDK5RAP3-217ENST00000580287 RUSC2Q8N2Y8 1516 aa20.71■□□□□ 0.91
CDK5RAP3-217ENST00000580287 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
CDK5RAP3-217ENST00000580287 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
CDK5RAP3-217ENST00000580287 PRDM2Q13029 1718 aa20.66■□□□□ 0.9
CDK5RAP3-217ENST00000580287 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
CDK5RAP3-217ENST00000580287 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
CDK5RAP3-217ENST00000580287 KIF21AQ7Z4S6 1674 aa20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 URB2Q14146 1524 aaKnown RBP20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
CDK5RAP3-217ENST00000580287 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
CDK5RAP3-217ENST00000580287 RAD54L2Q9Y4B4 1467 aa20.49■□□□□ 0.87
CDK5RAP3-217ENST00000580287 DNMBPQ6XZF7 1577 aa20.48■□□□□ 0.87
CDK5RAP3-217ENST00000580287 ERCC6Q03468 1493 aa20.48■□□□□ 0.87
CDK5RAP3-217ENST00000580287 POLA1P09884 1462 aaPredicted RBP20.46■□□□□ 0.87
CDK5RAP3-217ENST00000580287 CUX2O14529 1486 aa20.43■□□□□ 0.86
CDK5RAP3-217ENST00000580287 EEA1Q15075 1411 aa20.42■□□□□ 0.86
CDK5RAP3-217ENST00000580287 MRC2Q9UBG0 1479 aa20.39■□□□□ 0.86
CDK5RAP3-217ENST00000580287 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
CDK5RAP3-217ENST00000580287 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
CDK5RAP3-217ENST00000580287 TDRD9Q8NDG6 1382 aaKnown RBP20.35■□□□□ 0.85
CDK5RAP3-217ENST00000580287 PCGF6Q9BYE7 350 aa20.32■□□□□ 0.84
CDK5RAP3-217ENST00000580287 IGF1RP08069 1367 aa20.3■□□□□ 0.84
CDK5RAP3-217ENST00000580287 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
CDK5RAP3-217ENST00000580287 RANGAP1P46060 587 aaPredicted RBP20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 SLC24A1O60721 1099 aa20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 ABCA10Q8WWZ4 1543 aa20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 WDR62O43379 1518 aa20.25■□□□□ 0.83
CDK5RAP3-217ENST00000580287 GOLGA3Q08378 1498 aa20.23■□□□□ 0.83
CDK5RAP3-217ENST00000580287 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
CDK5RAP3-217ENST00000580287 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
CDK5RAP3-217ENST00000580287 AQRO60306 1485 aaKnown RBP eCLIP20.21■□□□□ 0.831e-7■■■■□ 24.7
CDK5RAP3-217ENST00000580287 TARBP1Q13395 1621 aaKnown RBP20.19■□□□□ 0.82
CDK5RAP3-217ENST00000580287 CARMIL1Q5VZK9 1371 aa20.19■□□□□ 0.82
CDK5RAP3-217ENST00000580287 ZNF608Q9ULD9 1512 aaPredicted RBP20.18■□□□□ 0.82
CDK5RAP3-217ENST00000580287 TNIKQ9UKE5 1360 aa20.17■□□□□ 0.82
CDK5RAP3-217ENST00000580287 KIF21BO75037 1637 aa20.16■□□□□ 0.82
CDK5RAP3-217ENST00000580287 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
CDK5RAP3-217ENST00000580287 WDR97A6NE52 1622 aa20.12■□□□□ 0.81
CDK5RAP3-217ENST00000580287 CEP162Q5TB80 1403 aa20.12■□□□□ 0.81
CDK5RAP3-217ENST00000580287 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
CDK5RAP3-217ENST00000580287 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.81
CDK5RAP3-217ENST00000580287 HRCP23327 699 aa20.08■□□□□ 0.8
CDK5RAP3-217ENST00000580287 ERICH3Q5RHP9 1530 aa20.04■□□□□ 0.8
CDK5RAP3-217ENST00000580287 PPARGC1BQ86YN6 1023 aaKnown RBP20.02■□□□□ 0.79
CDK5RAP3-217ENST00000580287 CLIP1P30622 1438 aa19.99■□□□□ 0.79
CDK5RAP3-217ENST00000580287 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
CDK5RAP3-217ENST00000580287 EIF4G3O43432 1585 aaKnown RBP19.95■□□□□ 0.78
CDK5RAP3-217ENST00000580287 FBLN2P98095 1184 aa19.95■□□□□ 0.78
CDK5RAP3-217ENST00000580287 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
CDK5RAP3-217ENST00000580287 P3H3Q8IVL6 736 aa19.92■□□□□ 0.78
CDK5RAP3-217ENST00000580287 CUL7Q14999 1698 aa19.91■□□□□ 0.78
CDK5RAP3-217ENST00000580287 PBRM1Q86U86 1689 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms