RNA–Protein interactions for RNA: ENST00000371122.8

SMARCA1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCA1, Length 4,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-202ENST00000371122 NISCHQ9Y2I1 1504 aa17.96■□□□□ 0.47
SMARCA1-202ENST00000371122 DCAF8L2P0C7V8 631 aa16.36■□□□□ 0.21
SMARCA1-202ENST00000371122 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.16
SMARCA1-202ENST00000371122 SUPT5HO00267 1087 aaKnown RBP15.75■□□□□ 0.11
SMARCA1-202ENST00000371122 SHROOM4Q9ULL8 1493 aa15.62■□□□□ 0.09
SMARCA1-202ENST00000371122 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
SMARCA1-202ENST00000371122 MYO15BQ96JP2 1530 aa15.1■□□□□ 0.01
SMARCA1-202ENST00000371122 DCAF1Q9Y4B6 1507 aa15.09■□□□□ 0.01
SMARCA1-202ENST00000371122 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
SMARCA1-202ENST00000371122 ABCC9O60706 1549 aa15.02■□□□□ -0
SMARCA1-202ENST00000371122 NACADO15069 1562 aa14.92□□□□□ -0.02
SMARCA1-202ENST00000371122 FAM9AQ8IZU1 332 aaPredicted RBP14.9□□□□□ -0.02
SMARCA1-202ENST00000371122 TTBK1Q5TCY1 1321 aaPredicted RBP14.82□□□□□ -0.04
SMARCA1-202ENST00000371122 RB1CC1Q8TDY2 1594 aa14.81□□□□□ -0.04
SMARCA1-202ENST00000371122 PCGF6Q9BYE7 350 aa14.75□□□□□ -0.05
SMARCA1-202ENST00000371122 UNC13AQ9UPW8 1703 aa14.68□□□□□ -0.06
SMARCA1-202ENST00000371122 RANGAP1P46060 587 aaPredicted RBP14.54□□□□□ -0.08
SMARCA1-202ENST00000371122 BICRAQ9NZM4 1560 aa14.49□□□□□ -0.09
SMARCA1-202ENST00000371122 PPARGC1BQ86YN6 1023 aaKnown RBP14.48□□□□□ -0.09
SMARCA1-202ENST00000371122 SCRIBQ14160 1630 aa14.35□□□□□ -0.11
SMARCA1-202ENST00000371122 TRIM41Q8WV44 630 aa14.32□□□□□ -0.12
SMARCA1-202ENST00000371122 LOC105371045A0A1W2PR82 267 aa14.3□□□□□ -0.12
SMARCA1-202ENST00000371122 APLP2Q06481 763 aa14.19□□□□□ -0.14
SMARCA1-202ENST00000371122 CCER1Q8TC90 406 aaPredicted RBP14.12□□□□□ -0.15
SMARCA1-202ENST00000371122 UBTFP17480 764 aaKnown RBP14.1□□□□□ -0.15
SMARCA1-202ENST00000371122 CHIC1Q5VXU3 224 aa14.08□□□□□ -0.16
SMARCA1-202ENST00000371122 ATP1B4Q9UN42 357 aaPredicted RBP14.08□□□□□ -0.16
SMARCA1-202ENST00000371122 YTHDC1Q96MU7 727 aaKnown RBP14□□□□□ -0.17
SMARCA1-202ENST00000371122 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.17
SMARCA1-202ENST00000371122 PEG3Q9GZU2 1588 aa13.96□□□□□ -0.17
SMARCA1-202ENST00000371122 SMARCA4P51532 1647 aa13.92□□□□□ -0.18
SMARCA1-202ENST00000371122 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
SMARCA1-202ENST00000371122 BAZ1AQ9NRL2 1556 aaPredicted RBP13.89□□□□□ -0.19
SMARCA1-202ENST00000371122 HRCP23327 699 aa13.88□□□□□ -0.19
SMARCA1-202ENST00000371122 CECR2Q9BXF3 1484 aa13.85□□□□□ -0.19
SMARCA1-202ENST00000371122 ITGAEP38570 1179 aa13.85□□□□□ -0.19
SMARCA1-202ENST00000371122 CC2D2AQ9P2K1 1620 aa13.82□□□□□ -0.2
SMARCA1-202ENST00000371122 TRIM26Q12899 539 aaPredicted RBP13.82□□□□□ -0.2
SMARCA1-202ENST00000371122 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
SMARCA1-202ENST00000371122 HNRNPUL2Q1KMD3 747 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-202ENST00000371122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.78□□□□□ -0.2
SMARCA1-202ENST00000371122 HMGXB3Q12766 1538 aa13.76□□□□□ -0.21
SMARCA1-202ENST00000371122 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
SMARCA1-202ENST00000371122 SMARCA2P51531 1590 aa13.73□□□□□ -0.21
SMARCA1-202ENST00000371122 ZEB1P37275 1124 aaPredicted RBP13.73□□□□□ -0.21
SMARCA1-202ENST00000371122 ATAD2BQ9ULI0 1458 aa13.71□□□□□ -0.21
SMARCA1-202ENST00000371122 CENPBP07199 599 aaPredicted RBP13.7□□□□□ -0.22
SMARCA1-202ENST00000371122 RSF1Q96T23 1441 aaPredicted RBP13.69□□□□□ -0.22
SMARCA1-202ENST00000371122 CNGB1Q14028 1251 aaPredicted RBP13.68□□□□□ -0.22
SMARCA1-202ENST00000371122 WIZO95785 1651 aa13.66□□□□□ -0.22
SMARCA1-202ENST00000371122 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
SMARCA1-202ENST00000371122 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
SMARCA1-202ENST00000371122 TOP2AP11388 1531 aaKnown RBP13.6□□□□□ -0.23
SMARCA1-202ENST00000371122 BAZ1BQ9UIG0 1483 aaKnown RBP13.5□□□□□ -0.25
SMARCA1-202ENST00000371122 POLR3GLQ9BT43 218 aa13.49□□□□□ -0.25
SMARCA1-202ENST00000371122 PRDM2Q13029 1718 aa13.44□□□□□ -0.26
SMARCA1-202ENST00000371122 DIEXFQ68CQ4 756 aaKnown RBP13.4□□□□□ -0.26
SMARCA1-202ENST00000371122 LAMC3Q9Y6N6 1575 aa13.35□□□□□ -0.27
SMARCA1-202ENST00000371122 CCDC88BA6NC98 1476 aa13.33□□□□□ -0.28
SMARCA1-202ENST00000371122 ERICH6Q7L0X2 663 aa13.32□□□□□ -0.28
SMARCA1-202ENST00000371122 NEFLP07196 543 aa13.31□□□□□ -0.28
SMARCA1-202ENST00000371122 NEUROD1Q13562 356 aa13.31□□□□□ -0.28
SMARCA1-202ENST00000371122 FAM50AQ14320 339 aaKnown RBP13.31□□□□□ -0.28
SMARCA1-202ENST00000371122 ARID3CA6NKF2 412 aa13.3□□□□□ -0.28
SMARCA1-202ENST00000371122 P3H3Q8IVL6 736 aa13.29□□□□□ -0.28
SMARCA1-202ENST00000371122 CFTRP13569 1480 aa13.29□□□□□ -0.28
SMARCA1-202ENST00000371122 BCANQ96GW7 911 aa13.25□□□□□ -0.29
SMARCA1-202ENST00000371122 MYT1LQ9UL68 1186 aa13.24□□□□□ -0.29
SMARCA1-202ENST00000371122 GTF3C3Q9Y5Q9 886 aa13.24□□□□□ -0.29
SMARCA1-202ENST00000371122 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
SMARCA1-202ENST00000371122 KIF21AQ7Z4S6 1674 aa13.18□□□□□ -0.3
SMARCA1-202ENST00000371122 THOC2Q8NI27 1593 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-202ENST00000371122 NESP48681 1621 aa13.15□□□□□ -0.3
SMARCA1-202ENST00000371122 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
SMARCA1-202ENST00000371122 TRIM52Q96A61 297 aa13.13□□□□□ -0.31
SMARCA1-202ENST00000371122 ZNF326Q5BKZ1 582 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-202ENST00000371122 SCAF1Q9H7N4 1312 aaKnown RBP13.1□□□□□ -0.31
SMARCA1-202ENST00000371122 FBLN2P98095 1184 aa13.09□□□□□ -0.31
SMARCA1-202ENST00000371122 WDR62O43379 1518 aa13.09□□□□□ -0.31
SMARCA1-202ENST00000371122 PDS5BQ9NTI5 1447 aa13.05□□□□□ -0.32
SMARCA1-202ENST00000371122 BIVM-ERCC5R4GMW8 1640 aa13.05□□□□□ -0.32
SMARCA1-202ENST00000371122 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
SMARCA1-202ENST00000371122 ZNF316A6NFI3 1004 aaPredicted RBP13.03□□□□□ -0.32
SMARCA1-202ENST00000371122 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.32
SMARCA1-202ENST00000371122 HIRIP3Q9BW71 556 aaPredicted RBP13□□□□□ -0.33
SMARCA1-202ENST00000371122 MRC2Q9UBG0 1479 aa13□□□□□ -0.33
SMARCA1-202ENST00000371122 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
SMARCA1-202ENST00000371122 DNMBPQ6XZF7 1577 aa12.99□□□□□ -0.33
SMARCA1-202ENST00000371122 URB2Q14146 1524 aaKnown RBP12.99□□□□□ -0.33
SMARCA1-202ENST00000371122 WDR97A6NE52 1622 aa12.97□□□□□ -0.33
SMARCA1-202ENST00000371122 ABCC8Q09428 1581 aa12.97□□□□□ -0.33
SMARCA1-202ENST00000371122 TOP2BQ02880 1626 aa12.96□□□□□ -0.33
SMARCA1-202ENST00000371122 ACIN1Q9UKV3 1341 aaKnown RBP12.96□□□□□ -0.34
SMARCA1-202ENST00000371122 CUX2O14529 1486 aa12.96□□□□□ -0.34
SMARCA1-202ENST00000371122 CUX1P39880 1505 aa12.94□□□□□ -0.34
SMARCA1-202ENST00000371122 MYT1Q01538 1121 aa12.94□□□□□ -0.34
SMARCA1-202ENST00000371122 TOPBP1Q92547 1522 aa12.93□□□□□ -0.34
SMARCA1-202ENST00000371122 TARBP1Q13395 1621 aaKnown RBP12.92□□□□□ -0.34
SMARCA1-202ENST00000371122 SYNJ1O43426 1573 aa12.91□□□□□ -0.34
SMARCA1-202ENST00000371122 SENP3-EIF4A1A0A087X0R7 540 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms