RNA–Protein interactions for RNA: ENST00000371123.5

SMARCA1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,948 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-203ENST00000371123 NISCHQ9Y2I1 1504 aa17.03■□□□□ 0.32
SMARCA1-203ENST00000371123 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
SMARCA1-203ENST00000371123 HRCP23327 699 aa15.11■□□□□ 0.01
SMARCA1-203ENST00000371123 PPARGC1BQ86YN6 1023 aaKnown RBP15.04■□□□□ -0
SMARCA1-203ENST00000371123 DCAF8L2P0C7V8 631 aa15.03■□□□□ -0
SMARCA1-203ENST00000371123 SUPT5HO00267 1087 aaKnown RBP14.88□□□□□ -0.03
SMARCA1-203ENST00000371123 MYO15BQ96JP2 1530 aa14.85□□□□□ -0.03
SMARCA1-203ENST00000371123 SHROOM4Q9ULL8 1493 aa14.85□□□□□ -0.03
SMARCA1-203ENST00000371123 PCGF6Q9BYE7 350 aa14.68□□□□□ -0.06
SMARCA1-203ENST00000371123 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
SMARCA1-203ENST00000371123 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
SMARCA1-203ENST00000371123 PELP1Q8IZL8 1130 aaKnown RBP14.5□□□□□ -0.09
SMARCA1-203ENST00000371123 DCAF1Q9Y4B6 1507 aa14.4□□□□□ -0.1
SMARCA1-203ENST00000371123 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
SMARCA1-203ENST00000371123 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
SMARCA1-203ENST00000371123 NACADO15069 1562 aa14.2□□□□□ -0.14
SMARCA1-203ENST00000371123 LOC105371045A0A1W2PR82 267 aa14.18□□□□□ -0.14
SMARCA1-203ENST00000371123 ABCC9O60706 1549 aa14.14□□□□□ -0.15
SMARCA1-203ENST00000371123 FAM9AQ8IZU1 332 aaPredicted RBP14.07□□□□□ -0.16
SMARCA1-203ENST00000371123 RB1CC1Q8TDY2 1594 aa14.07□□□□□ -0.16
SMARCA1-203ENST00000371123 TTBK1Q5TCY1 1321 aaPredicted RBP14.06□□□□□ -0.16
SMARCA1-203ENST00000371123 NEUROD1Q13562 356 aa14.05□□□□□ -0.16
SMARCA1-203ENST00000371123 TRIM26Q12899 539 aaPredicted RBP14.01□□□□□ -0.17
SMARCA1-203ENST00000371123 UNC13AQ9UPW8 1703 aa13.98□□□□□ -0.17
SMARCA1-203ENST00000371123 ACIN1Q9UKV3 1341 aaKnown RBP13.95□□□□□ -0.18
SMARCA1-203ENST00000371123 GTF3C3Q9Y5Q9 886 aa13.88□□□□□ -0.19
SMARCA1-203ENST00000371123 MYT1Q01538 1121 aa13.83□□□□□ -0.2
SMARCA1-203ENST00000371123 BICRAQ9NZM4 1560 aa13.77□□□□□ -0.2
SMARCA1-203ENST00000371123 ZEB1P37275 1124 aaPredicted RBP13.74□□□□□ -0.21
SMARCA1-203ENST00000371123 RANGAP1P46060 587 aaPredicted RBP13.59□□□□□ -0.23
SMARCA1-203ENST00000371123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
SMARCA1-203ENST00000371123 SCRIBQ14160 1630 aa13.54□□□□□ -0.24
SMARCA1-203ENST00000371123 DIEXFQ68CQ4 756 aaKnown RBP13.53□□□□□ -0.24
SMARCA1-203ENST00000371123 BCL11AQ9H165 835 aa13.46□□□□□ -0.26
SMARCA1-203ENST00000371123 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
SMARCA1-203ENST00000371123 YTHDC1Q96MU7 727 aaKnown RBP13.43□□□□□ -0.26
SMARCA1-203ENST00000371123 CENPBP07199 599 aaPredicted RBP13.41□□□□□ -0.26
SMARCA1-203ENST00000371123 PEG3Q9GZU2 1588 aa13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 MIER1Q8N108 512 aa13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 CCER1Q8TC90 406 aaPredicted RBP13.32□□□□□ -0.28
SMARCA1-203ENST00000371123 CSRNP3Q8WYN3 585 aa13.26□□□□□ -0.29
SMARCA1-203ENST00000371123 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
SMARCA1-203ENST00000371123 TSHZ2Q9NRE2 1034 aa13.24□□□□□ -0.29
SMARCA1-203ENST00000371123 ANP32EQ9BTT0 268 aa13.22□□□□□ -0.29
SMARCA1-203ENST00000371123 SMARCA4P51532 1647 aa13.21□□□□□ -0.3
SMARCA1-203ENST00000371123 ZNF316A6NFI3 1004 aaPredicted RBP13.19□□□□□ -0.3
SMARCA1-203ENST00000371123 SUPT16HQ9Y5B9 1047 aaKnown RBP13.19□□□□□ -0.3
SMARCA1-203ENST00000371123 BAZ1AQ9NRL2 1556 aaPredicted RBP13.17□□□□□ -0.3
SMARCA1-203ENST00000371123 PRKCSHP14314 528 aaPredicted RBP13.15□□□□□ -0.3
SMARCA1-203ENST00000371123 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
SMARCA1-203ENST00000371123 CC2D2AQ9P2K1 1620 aa13.1□□□□□ -0.31
SMARCA1-203ENST00000371123 RSF1Q96T23 1441 aaPredicted RBP13.1□□□□□ -0.31
SMARCA1-203ENST00000371123 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
SMARCA1-203ENST00000371123 UBTFP17480 764 aaKnown RBP13.07□□□□□ -0.32
SMARCA1-203ENST00000371123 CECR2Q9BXF3 1484 aa13.06□□□□□ -0.32
SMARCA1-203ENST00000371123 NCAPD3P42695 1498 aa13.04□□□□□ -0.32
SMARCA1-203ENST00000371123 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
SMARCA1-203ENST00000371123 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.32
SMARCA1-203ENST00000371123 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.33
SMARCA1-203ENST00000371123 ATAD2BQ9ULI0 1458 aa12.98□□□□□ -0.33
SMARCA1-203ENST00000371123 ITGAEP38570 1179 aa12.97□□□□□ -0.33
SMARCA1-203ENST00000371123 MSH5O43196 834 aa12.95□□□□□ -0.34
SMARCA1-203ENST00000371123 WRNQ14191 1432 aaPredicted RBP eCLIP12.94□□□□□ -0.34
SMARCA1-203ENST00000371123 KCNH8Q96L42 1107 aa12.93□□□□□ -0.34
SMARCA1-203ENST00000371123 ATP1B4Q9UN42 357 aaPredicted RBP12.93□□□□□ -0.34
SMARCA1-203ENST00000371123 WIZO95785 1651 aa12.91□□□□□ -0.34
SMARCA1-203ENST00000371123 APLP2Q06481 763 aa12.91□□□□□ -0.34
SMARCA1-203ENST00000371123 TOP2AP11388 1531 aaKnown RBP12.9□□□□□ -0.34
SMARCA1-203ENST00000371123 CNGB1Q14028 1251 aaPredicted RBP12.87□□□□□ -0.35
SMARCA1-203ENST00000371123 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
SMARCA1-203ENST00000371123 BCANQ96GW7 911 aa12.83□□□□□ -0.36
SMARCA1-203ENST00000371123 CEP162Q5TB80 1403 aa12.83□□□□□ -0.36
SMARCA1-203ENST00000371123 RBM19Q9Y4C8 960 aaKnown RBP12.82□□□□□ -0.36
SMARCA1-203ENST00000371123 ABCC8Q09428 1581 aa12.8□□□□□ -0.36
SMARCA1-203ENST00000371123 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
SMARCA1-203ENST00000371123 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
SMARCA1-203ENST00000371123 CCDC88BA6NC98 1476 aa12.76□□□□□ -0.37
SMARCA1-203ENST00000371123 RUSC2Q8N2Y8 1516 aa12.75□□□□□ -0.37
SMARCA1-203ENST00000371123 SOGA1O94964 1423 aa12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 CLSPNQ9HAW4 1339 aa12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 ANO8Q9HCE9 1232 aaPredicted RBP12.72□□□□□ -0.37
SMARCA1-203ENST00000371123 LAMC3Q9Y6N6 1575 aa12.7□□□□□ -0.38
SMARCA1-203ENST00000371123 FKBP8Q14318 412 aa12.68□□□□□ -0.38
SMARCA1-203ENST00000371123 TNIKQ9UKE5 1360 aa12.65□□□□□ -0.38
SMARCA1-203ENST00000371123 DHX57Q6P158 1386 aaKnown RBP12.63□□□□□ -0.39
SMARCA1-203ENST00000371123 CFTRP13569 1480 aa12.61□□□□□ -0.39
SMARCA1-203ENST00000371123 SALL2Q9Y467 1007 aaPredicted RBP12.56□□□□□ -0.4
SMARCA1-203ENST00000371123 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
SMARCA1-203ENST00000371123 HIRIP3Q9BW71 556 aaPredicted RBP12.52□□□□□ -0.41
SMARCA1-203ENST00000371123 DEKP35659 375 aaKnown RBP12.52□□□□□ -0.41
SMARCA1-203ENST00000371123 POLR3GLQ9BT43 218 aa12.51□□□□□ -0.41
SMARCA1-203ENST00000371123 KIF21AQ7Z4S6 1674 aa12.51□□□□□ -0.41
SMARCA1-203ENST00000371123 FANCIQ9NVI1 1328 aa12.5□□□□□ -0.41
SMARCA1-203ENST00000371123 CLIP1P30622 1438 aa12.49□□□□□ -0.41
SMARCA1-203ENST00000371123 SENP3-EIF4A1A0A087X0R7 540 aa12.49□□□□□ -0.41
SMARCA1-203ENST00000371123 CADPSQ9ULU8 1353 aa12.48□□□□□ -0.41
SMARCA1-203ENST00000371123 CCDC136Q96JN2 1154 aa12.48□□□□□ -0.41
SMARCA1-203ENST00000371123 TRIM52Q96A61 297 aa12.45□□□□□ -0.42
SMARCA1-203ENST00000371123 WDR62O43379 1518 aa12.45□□□□□ -0.42
SMARCA1-203ENST00000371123 P3H3Q8IVL6 736 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms