Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 MMS19-202ENST00000355839 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.112e-6■■■■■ 69.4
SUB1P53999 FBL-209ENST00000599134 500 ntTSL 515.09■□□□□ 0.019e-31■■■■■ 69.3
SUB1P53999 NOL11-209ENST00000583108 2071 ntTSL 28.02□□□□□ -1.131e-23■■■■■ 69.2
SUB1P53999 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.181e-23■■■■■ 69.2
SUB1P53999 NOL11-206ENST00000581375 2448 ntTSL 26.19□□□□□ -1.421e-23■■■■■ 69.2
SUB1P53999 NOL11-210ENST00000584032 612 ntTSL 24.65□□□□□ -1.671e-23■■■■■ 69.2
SUB1P53999 NOL11-208ENST00000583021 443 ntTSL 23.04□□□□□ -1.921e-23■■■■■ 69.2
SUB1P53999 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.64□□□□□ -0.234e-24■■■■■ 69.1
SUB1P53999 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.62□□□□□ -0.234e-24■■■■■ 69.1
SUB1P53999 FUS-212ENST00000569760 639 ntTSL 217.37■□□□□ 0.376e-7■■■■■ 69.1
SUB1P53999 INSIG2-203ENST00000467223 627 ntTSL 514.15□□□□□ -0.141e-14■■■■■ 68.8
SUB1P53999 INSIG2-202ENST00000411929 574 ntTSL 211.24□□□□□ -0.611e-14■■■■■ 68.8
SUB1P53999 INSIG2-206ENST00000485520 3185 ntTSL 58.59□□□□□ -1.031e-14■■■■■ 68.8
SUB1P53999 INSIG2-204ENST00000471186 2100 ntTSL 57.24□□□□□ -1.251e-14■■■■■ 68.8
SUB1P53999 INSIG2-201ENST00000245787 2590 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.41e-14■■■■■ 68.8
SUB1P53999 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.511e-28■■■■■ 68.8
SUB1P53999 HNRNPH3-210ENST00000490442 1521 ntTSL 211.25□□□□□ -0.611e-28■■■■■ 68.8
SUB1P53999 HNRNPH3-206ENST00000478698 1507 ntTSL 211.25□□□□□ -0.611e-28■■■■■ 68.8
SUB1P53999 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)10.67□□□□□ -0.71e-28■■■■■ 68.8
SUB1P53999 HNRNPH3-205ENST00000469172 3356 ntTSL 28.08□□□□□ -1.121e-28■■■■■ 68.8
SUB1P53999 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.354e-7■■■■■ 68.7
SUB1P53999 H2AFY-210ENST00000506671 1905 ntTSL 514.45□□□□□ -0.14e-7■■■■■ 68.7
SUB1P53999 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.56□□□□□ -0.44e-7■■■■■ 68.7
SUB1P53999 H2AFY-203ENST00000360597 1772 ntTSL 511.01□□□□□ -0.654e-7■■■■■ 68.7
SUB1P53999 H2AFY-201ENST00000304332 1881 ntAPPRIS ALT1 TSL 1 (best) BASIC9.17□□□□□ -0.944e-7■■■■■ 68.7
SUB1P53999 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.48□□□□□ -0.252e-14■■■■■ 68.6
SUB1P53999 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.442e-14■■■■■ 68.6
SUB1P53999 COPS3-215ENST00000578317 1625 ntTSL 26.28□□□□□ -1.42e-14■■■■■ 68.6
SUB1P53999 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC5.7□□□□□ -1.52e-14■■■■■ 68.6
SUB1P53999 COPS3-216ENST00000579716 419 ntTSL 25.38□□□□□ -1.552e-14■■■■■ 68.6
SUB1P53999 COPS3-208ENST00000486032 725 ntTSL 24.38□□□□□ -1.712e-14■■■■■ 68.6
SUB1P53999 POLR2G-208ENST00000533442 388 ntTSL 36.62□□□□□ -1.359e-7■■■■■ 68.6
SUB1P53999 MRPS9-203ENST00000472220 982 ntTSL 212.76□□□□□ -0.376e-11■■■■■ 68.6
SUB1P53999 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.696e-11■■■■■ 68.6
SUB1P53999 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.381e-14■■■■■ 68.4
SUB1P53999 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.02■□□□□ 0.311e-14■■■■■ 68.4
SUB1P53999 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.22■□□□□ 0.031e-14■■■■■ 68.4
SUB1P53999 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.271e-14■■■■■ 68.4
SUB1P53999 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.341e-14■■■■■ 68.4
SUB1P53999 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC11.57□□□□□ -0.561e-14■■■■■ 68.4
SUB1P53999 NDUFB1-203ENST00000553666 1333 ntTSL 29.69□□□□□ -0.861e-14■■■■■ 68.4
SUB1P53999 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.891e-14■■■■■ 68.4
SUB1P53999 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.951e-14■■■■■ 68.4
SUB1P53999 MRPL35-204ENST00000605125 833 ntTSL 2 BASIC7.49□□□□□ -1.211e-14■■■■■ 68.4
SUB1P53999 NDUFB1-206ENST00000605997 336 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.241e-14■■■■■ 68.4
SUB1P53999 TAF13-202ENST00000461096 1076 ntTSL 55.87□□□□□ -1.471e-14■■■■■ 68.4
SUB1P53999 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC4.6□□□□□ -1.671e-14■■■■■ 68.4
SUB1P53999 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.691e-14■■■■■ 68.4
SUB1P53999 USP15-214ENST00000549415 703 ntTSL 34.37□□□□□ -1.711e-14■■■■■ 68.4
SUB1P53999 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.751e-14■■■■■ 68.4
SUB1P53999 USP15-218ENST00000552346 655 ntTSL 23.78□□□□□ -1.81e-14■■■■■ 68.4
SUB1P53999 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.921e-14■■■■■ 68.4
SUB1P53999 USP15-209ENST00000548620 816 ntTSL 32.78□□□□□ -1.961e-14■■■■■ 68.4
SUB1P53999 USP15-211ENST00000549101 583 ntTSL 22.76□□□□□ -1.971e-14■■■■■ 68.4
SUB1P53999 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -21e-14■■■■■ 68.4
SUB1P53999 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.099e-16■■■■■ 67.4
SUB1P53999 FBL-204ENST00000594443 805 ntTSL 38.79□□□□□ -19e-16■■■■■ 67.4
SUB1P53999 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.262e-9■■■■■ 67.4
SUB1P53999 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.052e-9■■■■■ 67.4
SUB1P53999 YBX3-208ENST00000540447 6393 ntTSL 27.86□□□□□ -1.152e-9■■■■■ 67.4
SUB1P53999 EIF4A2-206ENST00000441007 480 ntTSL 39.8□□□□□ -0.845e-32■■■■■ 67
SUB1P53999 EIF4A2-208ENST00000445596 600 ntTSL 28.77□□□□□ -1.015e-32■■■■■ 67
SUB1P53999 EIF4A2-211ENST00000465222 676 ntTSL 24.9□□□□□ -1.635e-32■■■■■ 67
SUB1P53999 EIF4A2-221ENST00000491473 579 ntTSL 24.52□□□□□ -1.695e-32■■■■■ 67
SUB1P53999 EIF4A2-212ENST00000465267 1054 ntTSL 24.52□□□□□ -1.695e-32■■■■■ 67
SUB1P53999 EIF4A2-210ENST00000465032 578 ntTSL 24.23□□□□□ -1.735e-32■■■■■ 67
SUB1P53999 EIF4A2-220ENST00000486805 590 ntTSL 22.17□□□□□ -2.065e-32■■■■■ 67
SUB1P53999 MLH1-201ENST00000231790 2752 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.165e-11■■■■■ 66.9
SUB1P53999 MLH1-221ENST00000536378 2567 ntTSL 2 BASIC7.49□□□□□ -1.215e-11■■■■■ 66.9
SUB1P53999 MLH1-222ENST00000539477 2366 ntTSL 2 BASIC7.05□□□□□ -1.285e-11■■■■■ 66.9
SUB1P53999 MLH1-216ENST00000458205 2608 ntTSL 1 (best) BASIC6.83□□□□□ -1.325e-11■■■■■ 66.9
SUB1P53999 MLH1-213ENST00000456676 2230 ntTSL 1 (best)5.51□□□□□ -1.535e-11■■■■■ 66.9
SUB1P53999 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.72□□□□□ -1.655e-11■■■■■ 66.9
SUB1P53999 CCT8-210ENST00000496121 1326 ntTSL 26.74□□□□□ -1.332e-24■■■■■ 66.7
SUB1P53999 CCT8-203ENST00000432178 556 ntTSL 22.31□□□□□ -2.042e-24■■■■■ 66.7
SUB1P53999 PSMD1-202ENST00000373635 3230 ntTSL 5 BASIC9.88□□□□□ -0.834e-14■■■■■ 66.6
SUB1P53999 PSMD1-201ENST00000308696 3326 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.894e-14■■■■■ 66.6
SUB1P53999 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.794e-14■■■■■ 66.6
SUB1P53999 PSMD1-212ENST00000491229 546 ntTSL 22.99□□□□□ -1.934e-14■■■■■ 66.6
SUB1P53999 YWHAE-210ENST00000573026 780 ntTSL 3 BASIC8.27□□□□□ -1.091e-31■■■■■ 66.3
SUB1P53999 SRSF3-207ENST00000620389 2655 ntTSL 26.67□□□□□ -1.342e-11■■■■■ 66.3
SUB1P53999 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.512e-11■■■■■ 66.3
SUB1P53999 SRSF3-205ENST00000614136 2376 nt3.94□□□□□ -1.782e-11■■■■■ 66.3
SUB1P53999 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.11□□□□□ -0.156e-11■■■■■ 66.2
SUB1P53999 LMNA-216ENST00000496738 2405 ntTSL 213.34□□□□□ -0.276e-11■■■■■ 66.2
SUB1P53999 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.64□□□□□ -0.556e-11■■■■■ 66.2
SUB1P53999 NOL10-201ENST00000345985 3333 ntTSL 2 BASIC9.88□□□□□ -0.836e-11■■■■■ 66.2
SUB1P53999 NOL10-205ENST00000538384 3418 ntTSL 2 BASIC9.78□□□□□ -0.846e-11■■■■■ 66.2
SUB1P53999 NOL10-202ENST00000381685 2589 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.256e-11■■■■■ 66.2
SUB1P53999 ATP6AP1-209ENST00000491569 2079 ntTSL 216.3■□□□□ 0.22e-10■■■■■ 66.1
SUB1P53999 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.62□□□□□ -0.394e-14■■■■■ 66.1
SUB1P53999 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.2□□□□□ -0.464e-14■■■■■ 66.1
SUB1P53999 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC11.87□□□□□ -0.514e-14■■■■■ 66.1
SUB1P53999 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.534e-14■■■■■ 66.1
SUB1P53999 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.74□□□□□ -0.534e-14■■■■■ 66.1
SUB1P53999 CTNNA1-230ENST00000521724 2741 ntTSL 27.67□□□□□ -1.184e-14■■■■■ 66.1
SUB1P53999 MLF1-202ENST00000359117 2222 ntTSL 1 (best) BASIC7.64□□□□□ -1.194e-14■■■■■ 66.1
SUB1P53999 MLF1-214ENST00000497004 3048 ntTSL 1 (best)6.71□□□□□ -1.344e-14■■■■■ 66.1
SUB1P53999 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.09□□□□□ -1.754e-14■■■■■ 66.1
SUB1P53999 SON-212ENST00000470533 798 ntTSL 53.74□□□□□ -1.814e-14■■■■■ 66.1
Retrieved 100 of 11,644 protein–RNA pairs in 189.4 ms