RNA–Protein interactions for RNA: ENST00000473598.6

LMNA-213, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 2,015 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-213ENST00000473598 NISCHQ9Y2I1 1504 aa33.88■■■■□ 3.01
LMNA-213ENST00000473598 CCDC180Q9P1Z9 1646 aa29.86■■■□□ 2.37
LMNA-213ENST00000473598 ABCC9O60706 1549 aa29.11■■■□□ 2.25
LMNA-213ENST00000473598 ZCCHC6Q5VYS8 1495 aaKnown RBP28.42■■■□□ 2.14
LMNA-213ENST00000473598 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
LMNA-213ENST00000473598 DCAF1Q9Y4B6 1507 aa28.05■■■□□ 2.08
LMNA-213ENST00000473598 NACADO15069 1562 aa28.02■■■□□ 2.08
LMNA-213ENST00000473598 RB1CC1Q8TDY2 1594 aa28■■■□□ 2.07
LMNA-213ENST00000473598 MYO15BQ96JP2 1530 aa27.89■■■□□ 2.06
LMNA-213ENST00000473598 UNC13AQ9UPW8 1703 aa27.45■■□□□ 1.99
LMNA-213ENST00000473598 SCRIBQ14160 1630 aa27.4■■□□□ 1.98
LMNA-213ENST00000473598 SHROOM4Q9ULL8 1493 aa27.39■■□□□ 1.98
LMNA-213ENST00000473598 PABPN1Q86U42 306 aaKnown RBP eCLIP27.28■■□□□ 1.96
LMNA-213ENST00000473598 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
LMNA-213ENST00000473598 DNAJC5BQ9UF47 199 aa26.53■■□□□ 1.84
LMNA-213ENST00000473598 EIF4G1Q04637 1599 aaKnown RBP26.47■■□□□ 1.83
LMNA-213ENST00000473598 CECR2Q9BXF3 1484 aa26.38■■□□□ 1.81
LMNA-213ENST00000473598 CC2D2AQ9P2K1 1620 aa26.31■■□□□ 1.8
LMNA-213ENST00000473598 SUPT5HO00267 1087 aaKnown RBP26.24■■□□□ 1.79
LMNA-213ENST00000473598 BAZ1AQ9NRL2 1556 aaPredicted RBP26.19■■□□□ 1.78
LMNA-213ENST00000473598 SMARCA4P51532 1647 aa26.18■■□□□ 1.78
LMNA-213ENST00000473598 RSF1Q96T23 1441 aaPredicted RBP26.17■■□□□ 1.78
LMNA-213ENST00000473598 MROH2BQ7Z745 1585 aa26.15■■□□□ 1.78
LMNA-213ENST00000473598 ATAD2BQ9ULI0 1458 aa25.97■■□□□ 1.75
LMNA-213ENST00000473598 WIZO95785 1651 aa25.96■■□□□ 1.75
LMNA-213ENST00000473598 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
LMNA-213ENST00000473598 NCAPD3P42695 1498 aa25.88■■□□□ 1.73
LMNA-213ENST00000473598 PEG3Q9GZU2 1588 aa25.87■■□□□ 1.73
LMNA-213ENST00000473598 BAZ1BQ9UIG0 1483 aaKnown RBP25.77■■□□□ 1.72
LMNA-213ENST00000473598 HMGXB3Q12766 1538 aa25.77■■□□□ 1.72
LMNA-213ENST00000473598 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
LMNA-213ENST00000473598 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
LMNA-213ENST00000473598 NESP48681 1621 aa25.29■■□□□ 1.64
LMNA-213ENST00000473598 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
LMNA-213ENST00000473598 LAMC3Q9Y6N6 1575 aa25.14■■□□□ 1.62
LMNA-213ENST00000473598 CFTRP13569 1480 aa25.07■■□□□ 1.6
LMNA-213ENST00000473598 CHIC1Q5VXU3 224 aa25.02■■□□□ 1.6
LMNA-213ENST00000473598 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
LMNA-213ENST00000473598 PDS5BQ9NTI5 1447 aa24.97■■□□□ 1.59
LMNA-213ENST00000473598 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
LMNA-213ENST00000473598 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.58
LMNA-213ENST00000473598 PRDM2Q13029 1718 aa24.87■■□□□ 1.57
LMNA-213ENST00000473598 CEP164Q9UPV0 1460 aa24.82■■□□□ 1.56
LMNA-213ENST00000473598 THOC2Q8NI27 1593 aaKnown RBP24.79■■□□□ 1.56
LMNA-213ENST00000473598 ABCC8Q09428 1581 aa24.78■■□□□ 1.56
LMNA-213ENST00000473598 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
LMNA-213ENST00000473598 TRIM41Q8WV44 630 aa24.71■■□□□ 1.55
LMNA-213ENST00000473598 URB2Q14146 1524 aaKnown RBP24.65■■□□□ 1.54
LMNA-213ENST00000473598 WRNQ14191 1432 aaPredicted RBP eCLIP24.64■■□□□ 1.545e-6■■■■□ 20.9
LMNA-213ENST00000473598 WDR62O43379 1518 aa24.63■■□□□ 1.53
LMNA-213ENST00000473598 CUX2O14529 1486 aa24.59■■□□□ 1.53
LMNA-213ENST00000473598 SYNJ1O43426 1573 aa24.57■■□□□ 1.52
LMNA-213ENST00000473598 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
LMNA-213ENST00000473598 TOP2BQ02880 1626 aa24.51■■□□□ 1.51
LMNA-213ENST00000473598 BIVM-ERCC5R4GMW8 1640 aa24.51■■□□□ 1.51
LMNA-213ENST00000473598 DNMBPQ6XZF7 1577 aa24.49■■□□□ 1.51
LMNA-213ENST00000473598 CUX1P39880 1505 aa24.47■■□□□ 1.51
LMNA-213ENST00000473598 POLA1P09884 1462 aaPredicted RBP24.35■■□□□ 1.49
LMNA-213ENST00000473598 FGD5Q6ZNL6 1462 aa24.33■■□□□ 1.49
LMNA-213ENST00000473598 RAD54L2Q9Y4B4 1467 aa24.28■■□□□ 1.48
LMNA-213ENST00000473598 IFT140Q96RY7 1462 aa24.26■■□□□ 1.47
LMNA-213ENST00000473598 SOGA1O94964 1423 aa24.24■■□□□ 1.47
LMNA-213ENST00000473598 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
LMNA-213ENST00000473598 ZNF608Q9ULD9 1512 aaPredicted RBP24.23■■□□□ 1.47
LMNA-213ENST00000473598 FAM9AQ8IZU1 332 aaPredicted RBP24.22■■□□□ 1.47
LMNA-213ENST00000473598 EEA1Q15075 1411 aa24.18■■□□□ 1.46
LMNA-213ENST00000473598 RUSC2Q8N2Y8 1516 aa24.17■■□□□ 1.46
LMNA-213ENST00000473598 AQRO60306 1485 aaKnown RBP eCLIP24.12■■□□□ 1.451e-7■■■■■ 36.5
LMNA-213ENST00000473598 TDRD9Q8NDG6 1382 aaKnown RBP24.12■■□□□ 1.45
LMNA-213ENST00000473598 EIF4G3O43432 1585 aaKnown RBP24.1■■□□□ 1.45
LMNA-213ENST00000473598 WDR97A6NE52 1622 aa24.09■■□□□ 1.45
LMNA-213ENST00000473598 ABCA10Q8WWZ4 1543 aa24.07■■□□□ 1.44
LMNA-213ENST00000473598 CSRNP3Q8WYN3 585 aa24.04■■□□□ 1.44
LMNA-213ENST00000473598 KIF27Q86VH2 1401 aa24.04■■□□□ 1.44
LMNA-213ENST00000473598 LOC105371045A0A1W2PR82 267 aa24.03■■□□□ 1.44
LMNA-213ENST00000473598 ABCA5Q8WWZ7 1642 aa23.96■■□□□ 1.43
LMNA-213ENST00000473598 GAPVD1Q14C86 1478 aa23.96■■□□□ 1.43
LMNA-213ENST00000473598 KIF21BO75037 1637 aa23.91■■□□□ 1.42
LMNA-213ENST00000473598 GRIN2BQ13224 1484 aa23.89■■□□□ 1.42
LMNA-213ENST00000473598 PBRM1Q86U86 1689 aa23.89■■□□□ 1.42
LMNA-213ENST00000473598 SNAPC4Q5SXM2 1469 aa23.88■■□□□ 1.41
LMNA-213ENST00000473598 EHMT2Q96KQ7 1210 aa23.86■■□□□ 1.41
LMNA-213ENST00000473598 PELP1Q8IZL8 1130 aaKnown RBP23.84■■□□□ 1.41
LMNA-213ENST00000473598 IGF1RP08069 1367 aa23.84■■□□□ 1.41
LMNA-213ENST00000473598 GOLGA3Q08378 1498 aa23.83■■□□□ 1.4
LMNA-213ENST00000473598 PRXQ9BXM0 1461 aa23.83■■□□□ 1.4
LMNA-213ENST00000473598 MAGI1Q96QZ7 1491 aaPredicted RBP23.79■■□□□ 1.4
LMNA-213ENST00000473598 FBLN2P98095 1184 aa23.79■■□□□ 1.4
LMNA-213ENST00000473598 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
LMNA-213ENST00000473598 RAPGEF2Q9Y4G8 1499 aa23.77■■□□□ 1.4
LMNA-213ENST00000473598 CHD1O14646 1710 aa23.75■■□□□ 1.39
LMNA-213ENST00000473598 CUL7Q14999 1698 aa23.75■■□□□ 1.39
LMNA-213ENST00000473598 ADAMTS12P58397 1594 aa23.72■■□□□ 1.39
LMNA-213ENST00000473598 CARMIL1Q5VZK9 1371 aa23.72■■□□□ 1.39
LMNA-213ENST00000473598 SYNJ2O15056 1496 aa23.71■■□□□ 1.39
LMNA-213ENST00000473598 CHMP7Q8WUX9 453 aaPredicted RBP23.71■■□□□ 1.39
LMNA-213ENST00000473598 TNIKQ9UKE5 1360 aa23.7■■□□□ 1.38
LMNA-213ENST00000473598 UBTFP17480 764 aaKnown RBP23.69■■□□□ 1.38
LMNA-213ENST00000473598 OSCARQ8IYS5 282 aa23.67■■□□□ 1.38
LMNA-213ENST00000473598 FHAD1B1AJZ9 1412 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms