RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 AEBP2Q6ZN18 517 aaPredicted RBP29.55■■■□□ 2.32
COPS3-216ENST00000579716 CHIC1Q5VXU3 224 aa27.79■■■□□ 2.04
COPS3-216ENST00000579716 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
COPS3-216ENST00000579716 PHF23Q9BUL5 403 aaPredicted RBP24.74■■□□□ 1.55
COPS3-216ENST00000579716 FOXD1Q16676 465 aa23.45■■□□□ 1.34
COPS3-216ENST00000579716 PLPPR3Q6T4P5 718 aa22.03■■□□□ 1.12
COPS3-216ENST00000579716 PPP6R1Q9UPN7 881 aa21.95■■□□□ 1.1
COPS3-216ENST00000579716 MSH5O43196 834 aa21.78■■□□□ 1.08
COPS3-216ENST00000579716 ADRA2BP18089 450 aa21.78■■□□□ 1.08
COPS3-216ENST00000579716 PIAS4Q8N2W9 510 aaPredicted RBP21.73■■□□□ 1.07
COPS3-216ENST00000579716 POTEDQ86YR6 584 aa21.65■■□□□ 1.06
COPS3-216ENST00000579716 MAPK8IP2Q13387 824 aaPredicted RBP20.1■□□□□ 0.81
COPS3-216ENST00000579716 DMRT2Q9Y5R5 561 aa19.86■□□□□ 0.77
COPS3-216ENST00000579716 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
COPS3-216ENST00000579716 PPP4R3CPQ6ZMV5 832 aa19.38■□□□□ 0.69
COPS3-216ENST00000579716 HOXD11P31277 338 aaPredicted RBP19.1■□□□□ 0.65
COPS3-216ENST00000579716 CNKSR2Q8WXI2 1034 aa18.98■□□□□ 0.63
COPS3-216ENST00000579716 DCAF8L1A6NGE4 600 aa18.9■□□□□ 0.62
COPS3-216ENST00000579716 RNF216Q9NWF9 866 aaPredicted RBP18.86■□□□□ 0.61
COPS3-216ENST00000579716 CACNB1Q02641 598 aaPredicted RBP18.78■□□□□ 0.6
COPS3-216ENST00000579716 RNF39Q9H2S5 420 aa18.72■□□□□ 0.59
COPS3-216ENST00000579716 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
COPS3-216ENST00000579716 DNAJC5BQ9UF47 199 aa18.4■□□□□ 0.54
COPS3-216ENST00000579716 NPM3O75607 178 aaKnown RBP18.37■□□□□ 0.53
COPS3-216ENST00000579716 C1QBPQ07021 282 aaKnown RBP18.34■□□□□ 0.53
COPS3-216ENST00000579716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
COPS3-216ENST00000579716 KCNA4P22459 653 aa17.94■□□□□ 0.46
COPS3-216ENST00000579716 U3KPZ7 1027 aaPredicted RBP17.82■□□□□ 0.44
COPS3-216ENST00000579716 SLC4A2P04920 1241 aa17.67■□□□□ 0.42
COPS3-216ENST00000579716 SPINK5Q9NQ38 1064 aaPredicted RBP17.63■□□□□ 0.41
COPS3-216ENST00000579716 DSG3P32926 999 aa17.5■□□□□ 0.39
COPS3-216ENST00000579716 CAPN15O75808 1086 aa17.43■□□□□ 0.38
COPS3-216ENST00000579716 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
COPS3-216ENST00000579716 ABCB7O75027 752 aa17.09■□□□□ 0.33
COPS3-216ENST00000579716 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
COPS3-216ENST00000579716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.01■□□□□ 0.31
COPS3-216ENST00000579716 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
COPS3-216ENST00000579716 SAMD1Q6SPF0 538 aaPredicted RBP16.98■□□□□ 0.31
COPS3-216ENST00000579716 APLP2Q06481 763 aa16.97■□□□□ 0.31
COPS3-216ENST00000579716 POTEHQ6S545 545 aa16.87■□□□□ 0.29
COPS3-216ENST00000579716 MYCNP04198 464 aaPredicted RBP16.85■□□□□ 0.29
COPS3-216ENST00000579716 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
COPS3-216ENST00000579716 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
COPS3-216ENST00000579716 POLA2Q14181 598 aa16.72■□□□□ 0.27
COPS3-216ENST00000579716 FOXD4L1Q9NU39 408 aa16.65■□□□□ 0.26
COPS3-216ENST00000579716 ZBTB22O15209 634 aa16.6■□□□□ 0.25
COPS3-216ENST00000579716 RBM42Q9BTD8 480 aaKnown RBP16.47■□□□□ 0.23
COPS3-216ENST00000579716 CHRDL2Q6WN34 429 aa16.3■□□□□ 0.2
COPS3-216ENST00000579716 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
COPS3-216ENST00000579716 AKT1S1Q96B36 256 aa16.18■□□□□ 0.18
COPS3-216ENST00000579716 ZBTB12Q9Y330 459 aaPredicted RBP16.17■□□□□ 0.18
COPS3-216ENST00000579716 ATXN8OSP0DMR3 200 aa16.13■□□□□ 0.17
COPS3-216ENST00000579716 REM2Q8IYK8 340 aaPredicted RBP16.1■□□□□ 0.17
COPS3-216ENST00000579716 PIP4P2Q8N4L2 257 aa15.95■□□□□ 0.14
COPS3-216ENST00000579716 PITPNM1O00562 1244 aa15.93■□□□□ 0.14
COPS3-216ENST00000579716 MKRN4PQ13434 485 aaPredicted RBP15.93■□□□□ 0.14
COPS3-216ENST00000579716 FXR2P51116 673 aaKnown RBP eCLIP15.85■□□□□ 0.13
COPS3-216ENST00000579716 SPDYE2BA6NHP3 402 aa15.77■□□□□ 0.12
COPS3-216ENST00000579716 SPDYE6P0CI01 402 aa15.77■□□□□ 0.12
COPS3-216ENST00000579716 SPDYE2Q495Y8 402 aa15.77■□□□□ 0.12
COPS3-216ENST00000579716 FBLN2P98095 1184 aa15.75■□□□□ 0.11
COPS3-216ENST00000579716 SP7Q8TDD2 431 aaPredicted RBP15.74■□□□□ 0.11
COPS3-216ENST00000579716 CSRNP3Q8WYN3 585 aa15.67■□□□□ 0.1
COPS3-216ENST00000579716 EVX2Q03828 476 aa15.65■□□□□ 0.1
COPS3-216ENST00000579716 SSUH2Q9Y2M2 353 aa15.65■□□□□ 0.1
COPS3-216ENST00000579716 HAX1O00165 279 aa15.59■□□□□ 0.09
COPS3-216ENST00000579716 ZNF692Q9BU19 519 aaPredicted RBP15.58■□□□□ 0.08
COPS3-216ENST00000579716 SPDYE1Q8NFV5 336 aaPredicted RBP15.5■□□□□ 0.07
COPS3-216ENST00000579716 CLEC11AQ9Y240 323 aa15.49■□□□□ 0.07
COPS3-216ENST00000579716 PRKAR2AP13861 404 aaKnown RBP15.47■□□□□ 0.07
COPS3-216ENST00000579716 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
COPS3-216ENST00000579716 CHADLQ6NUI6 762 aa15.34■□□□□ 0.05
COPS3-216ENST00000579716 C19orf67A6NJJ6 358 aa15.33■□□□□ 0.04
COPS3-216ENST00000579716 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
COPS3-216ENST00000579716 PRR29P0C7W0 189 aa15.22■□□□□ 0.03
COPS3-216ENST00000579716 GABBR2O75899 941 aa15.14■□□□□ 0.01
COPS3-216ENST00000579716 FARP1Q9Y4F1 1045 aaPredicted RBP15.05■□□□□ -0
COPS3-216ENST00000579716 CREBZFQ9NS37 354 aa14.96□□□□□ -0.01
COPS3-216ENST00000579716 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
COPS3-216ENST00000579716 CD44P16070 742 aaKnown RBP14.94□□□□□ -0.02
COPS3-216ENST00000579716 SPDYE4A6NLX3 237 aa14.93□□□□□ -0.02
COPS3-216ENST00000579716 STAG3Q9UJ98 1225 aa14.8□□□□□ -0.04
COPS3-216ENST00000579716 MNX1P50219 401 aaPredicted RBP14.77□□□□□ -0.05
COPS3-216ENST00000579716 LHX8Q68G74 356 aa14.77□□□□□ -0.05
COPS3-216ENST00000579716 ZNF579Q8NAF0 562 aaKnown RBP14.74□□□□□ -0.05
COPS3-216ENST00000579716 ZRANB1Q9UGI0 708 aa14.72□□□□□ -0.05
COPS3-216ENST00000579716 PROM2Q8N271 834 aa14.7□□□□□ -0.06
COPS3-216ENST00000579716 CLCN6P51797 869 aa14.66□□□□□ -0.06
COPS3-216ENST00000579716 GALR2O43603 387 aaPredicted RBP14.64□□□□□ -0.07
COPS3-216ENST00000579716 PHF12Q96QT6 1004 aa14.58□□□□□ -0.08
COPS3-216ENST00000579716 DCBLD2Q96PD2 775 aa14.54□□□□□ -0.08
COPS3-216ENST00000579716 POTEB2H3BUK9 544 aa14.46□□□□□ -0.09
COPS3-216ENST00000579716 NPM1P06748 294 aaKnown RBP eCLIP14.46□□□□□ -0.09
COPS3-216ENST00000579716 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.09
COPS3-216ENST00000579716 PAK3O75914 559 aaPredicted RBP14.39□□□□□ -0.11
COPS3-216ENST00000579716 MS4A3Q96HJ5 214 aa14.36□□□□□ -0.11
COPS3-216ENST00000579716 OTUD5Q96G74 571 aa14.35□□□□□ -0.11
COPS3-216ENST00000579716 CCDC61Q9Y6R9 512 aa14.34□□□□□ -0.11
COPS3-216ENST00000579716 TSPYL2Q9H2G4 693 aaPredicted RBP14.32□□□□□ -0.12
COPS3-216ENST00000579716 ASTLQ6HA08 431 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms