RNA–Protein interactions for RNA: ENST00000496738.5

LMNA-216, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-216ENST00000496738 NISCHQ9Y2I1 1504 aa38.72■■■■□ 3.79
LMNA-216ENST00000496738 CCDC180Q9P1Z9 1646 aa33.83■■■■□ 3.01
LMNA-216ENST00000496738 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
LMNA-216ENST00000496738 ABCC9O60706 1549 aa32.35■■■□□ 2.77
LMNA-216ENST00000496738 DCAF8L2P0C7V8 631 aa32.22■■■□□ 2.75
LMNA-216ENST00000496738 DCAF1Q9Y4B6 1507 aa31.91■■■□□ 2.7
LMNA-216ENST00000496738 SHROOM4Q9ULL8 1493 aa31.62■■■□□ 2.65
LMNA-216ENST00000496738 MYO15BQ96JP2 1530 aa31.6■■■□□ 2.65
LMNA-216ENST00000496738 NACADO15069 1562 aa31.56■■■□□ 2.64
LMNA-216ENST00000496738 RB1CC1Q8TDY2 1594 aa31.38■■■□□ 2.61
LMNA-216ENST00000496738 SCRIBQ14160 1630 aa31.23■■■□□ 2.59
LMNA-216ENST00000496738 UNC13AQ9UPW8 1703 aa30.8■■■□□ 2.52
LMNA-216ENST00000496738 PABPN1Q86U42 306 aaKnown RBP eCLIP30.49■■■□□ 2.47
LMNA-216ENST00000496738 BICRAQ9NZM4 1560 aa30.47■■■□□ 2.47
LMNA-216ENST00000496738 SUPT5HO00267 1087 aaKnown RBP30.27■■■□□ 2.44
LMNA-216ENST00000496738 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
LMNA-216ENST00000496738 RSF1Q96T23 1441 aaPredicted RBP29.97■■■□□ 2.39
LMNA-216ENST00000496738 MROH2BQ7Z745 1585 aa29.96■■■□□ 2.39
LMNA-216ENST00000496738 BAZ1AQ9NRL2 1556 aaPredicted RBP29.91■■■□□ 2.38
LMNA-216ENST00000496738 SMARCA4P51532 1647 aa29.84■■■□□ 2.37
LMNA-216ENST00000496738 WIZO95785 1651 aa29.73■■■□□ 2.35
LMNA-216ENST00000496738 EIF4G1Q04637 1599 aaKnown RBP29.58■■■□□ 2.33
LMNA-216ENST00000496738 PEG3Q9GZU2 1588 aa29.4■■■□□ 2.3
LMNA-216ENST00000496738 ATAD2BQ9ULI0 1458 aa29.39■■■□□ 2.3
LMNA-216ENST00000496738 TOP2AP11388 1531 aaKnown RBP29.35■■■□□ 2.29
LMNA-216ENST00000496738 SMARCA2P51531 1590 aa29.34■■■□□ 2.29
LMNA-216ENST00000496738 BAZ1BQ9UIG0 1483 aaKnown RBP29.24■■■□□ 2.27
LMNA-216ENST00000496738 CC2D2AQ9P2K1 1620 aa29.22■■■□□ 2.27
LMNA-216ENST00000496738 NCAPD3P42695 1498 aa29.13■■■□□ 2.25
LMNA-216ENST00000496738 HMGXB3Q12766 1538 aa29.08■■■□□ 2.25
LMNA-216ENST00000496738 CCDC88BA6NC98 1476 aa29.07■■■□□ 2.24
LMNA-216ENST00000496738 CHIC1Q5VXU3 224 aa28.77■■■□□ 2.2
LMNA-216ENST00000496738 DNAJC5BQ9UF47 199 aa28.74■■■□□ 2.19
LMNA-216ENST00000496738 ABCC8Q09428 1581 aa28.47■■■□□ 2.15
LMNA-216ENST00000496738 CFTRP13569 1480 aa28.45■■■□□ 2.14
LMNA-216ENST00000496738 TRIM41Q8WV44 630 aa28.41■■■□□ 2.14
LMNA-216ENST00000496738 CADPSQ9ULU8 1353 aa28.4■■■□□ 2.14
LMNA-216ENST00000496738 NESP48681 1621 aa28.34■■■□□ 2.13
LMNA-216ENST00000496738 PRDM2Q13029 1718 aa28.28■■■□□ 2.12
LMNA-216ENST00000496738 WRNQ14191 1432 aaPredicted RBP eCLIP28.23■■■□□ 2.115e-6■■□□□ 12.5
LMNA-216ENST00000496738 LAMC3Q9Y6N6 1575 aa28.19■■■□□ 2.1
LMNA-216ENST00000496738 SYNJ1O43426 1573 aa28.16■■■□□ 2.1
LMNA-216ENST00000496738 FANCD2Q9BXW9 1451 aa28.13■■■□□ 2.09
LMNA-216ENST00000496738 CUX1P39880 1505 aa28.02■■■□□ 2.08
LMNA-216ENST00000496738 TOP2BQ02880 1626 aa28■■■□□ 2.07
LMNA-216ENST00000496738 FAM9AQ8IZU1 332 aaPredicted RBP28■■■□□ 2.07
LMNA-216ENST00000496738 PDS5BQ9NTI5 1447 aa27.99■■■□□ 2.07
LMNA-216ENST00000496738 BIVM-ERCC5R4GMW8 1640 aa27.97■■■□□ 2.07
LMNA-216ENST00000496738 CEP164Q9UPV0 1460 aa27.96■■■□□ 2.07
LMNA-216ENST00000496738 KIF21AQ7Z4S6 1674 aa27.96■■■□□ 2.07
LMNA-216ENST00000496738 SOGA1O94964 1423 aa27.85■■■□□ 2.05
LMNA-216ENST00000496738 DNMBPQ6XZF7 1577 aa27.81■■■□□ 2.04
LMNA-216ENST00000496738 URB2Q14146 1524 aaKnown RBP27.8■■■□□ 2.04
LMNA-216ENST00000496738 TOPBP1Q92547 1522 aa27.79■■■□□ 2.04
LMNA-216ENST00000496738 RUSC2Q8N2Y8 1516 aa27.79■■■□□ 2.04
LMNA-216ENST00000496738 FGD5Q6ZNL6 1462 aa27.76■■■□□ 2.04
LMNA-216ENST00000496738 LOC105371045A0A1W2PR82 267 aa27.74■■■□□ 2.03
LMNA-216ENST00000496738 ERCC6Q03468 1493 aa27.74■■■□□ 2.03
LMNA-216ENST00000496738 EHMT2Q96KQ7 1210 aa27.71■■■□□ 2.03
LMNA-216ENST00000496738 MRC2Q9UBG0 1479 aa27.67■■■□□ 2.02
LMNA-216ENST00000496738 POLA1P09884 1462 aaPredicted RBP27.65■■■□□ 2.02
LMNA-216ENST00000496738 EEA1Q15075 1411 aa27.61■■■□□ 2.01
LMNA-216ENST00000496738 RAD54L2Q9Y4B4 1467 aa27.61■■■□□ 2.01
LMNA-216ENST00000496738 CSRNP3Q8WYN3 585 aa27.57■■■□□ 2
LMNA-216ENST00000496738 CUX2O14529 1486 aa27.55■■■□□ 2
LMNA-216ENST00000496738 WDR62O43379 1518 aa27.53■■■□□ 2
LMNA-216ENST00000496738 THOC2Q8NI27 1593 aaKnown RBP27.53■■■□□ 2
LMNA-216ENST00000496738 KIF27Q86VH2 1401 aa27.51■■□□□ 1.99
LMNA-216ENST00000496738 ABCA10Q8WWZ4 1543 aa27.45■■□□□ 1.98
LMNA-216ENST00000496738 WDR97A6NE52 1622 aa27.41■■□□□ 1.98
LMNA-216ENST00000496738 TARBP1Q13395 1621 aaKnown RBP27.38■■□□□ 1.97
LMNA-216ENST00000496738 TDRD9Q8NDG6 1382 aaKnown RBP27.36■■□□□ 1.97
LMNA-216ENST00000496738 KIF21BO75037 1637 aa27.32■■□□□ 1.96
LMNA-216ENST00000496738 GOLGA3Q08378 1498 aa27.3■■□□□ 1.96
LMNA-216ENST00000496738 IGF1RP08069 1367 aa27.29■■□□□ 1.96
LMNA-216ENST00000496738 RAPGEF2Q9Y4G8 1499 aa27.28■■□□□ 1.96
LMNA-216ENST00000496738 IFT140Q96RY7 1462 aa27.28■■□□□ 1.96
LMNA-216ENST00000496738 ABCA5Q8WWZ7 1642 aa27.28■■□□□ 1.96
LMNA-216ENST00000496738 UBTFP17480 764 aaKnown RBP27.26■■□□□ 1.95
LMNA-216ENST00000496738 PRXQ9BXM0 1461 aa27.26■■□□□ 1.95
LMNA-216ENST00000496738 GAPVD1Q14C86 1478 aa27.24■■□□□ 1.95
LMNA-216ENST00000496738 ZNF608Q9ULD9 1512 aaPredicted RBP27.22■■□□□ 1.95
LMNA-216ENST00000496738 AQRO60306 1485 aaKnown RBP eCLIP27.21■■□□□ 1.952e-7■■■■■ 37.8
LMNA-216ENST00000496738 CARMIL1Q5VZK9 1371 aa27.17■■□□□ 1.94
LMNA-216ENST00000496738 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
LMNA-216ENST00000496738 TNIKQ9UKE5 1360 aa27.14■■□□□ 1.93
LMNA-216ENST00000496738 PBRM1Q86U86 1689 aa27.13■■□□□ 1.93
LMNA-216ENST00000496738 EIF4G3O43432 1585 aaKnown RBP27.11■■□□□ 1.93
LMNA-216ENST00000496738 CUL7Q14999 1698 aa27.09■■□□□ 1.93
LMNA-216ENST00000496738 GRIN2BQ13224 1484 aa27.04■■□□□ 1.92
LMNA-216ENST00000496738 CEP162Q5TB80 1403 aa27.04■■□□□ 1.92
LMNA-216ENST00000496738 RANGAP1P46060 587 aaPredicted RBP27.02■■□□□ 1.92
LMNA-216ENST00000496738 ADAMTS12P58397 1594 aa26.95■■□□□ 1.9
LMNA-216ENST00000496738 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.9
LMNA-216ENST00000496738 FHAD1B1AJZ9 1412 aa26.91■■□□□ 1.9
LMNA-216ENST00000496738 CLIP1P30622 1438 aa26.89■■□□□ 1.89
LMNA-216ENST00000496738 MAGI1Q96QZ7 1491 aaPredicted RBP26.81■■□□□ 1.88
LMNA-216ENST00000496738 CTTNBP2Q8WZ74 1663 aa26.79■■□□□ 1.88
LMNA-216ENST00000496738 FBLN2P98095 1184 aa26.77■■□□□ 1.88
LMNA-216ENST00000496738 SYNJ2O15056 1496 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms