RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 AEBP2Q6ZN18 517 aaPredicted RBP22.72■■□□□ 1.23
COPS3-215ENST00000578317 CHIC1Q5VXU3 224 aa22.35■■□□□ 1.17
COPS3-215ENST00000578317 PHF23Q9BUL5 403 aaPredicted RBP19.74■□□□□ 0.75
COPS3-215ENST00000578317 SENP3Q9H4L4 574 aaPredicted RBP19.11■□□□□ 0.65
COPS3-215ENST00000578317 NISCHQ9Y2I1 1504 aa18.65■□□□□ 0.58
COPS3-215ENST00000578317 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
COPS3-215ENST00000578317 FOXD1Q16676 465 aa17.79■□□□□ 0.44
COPS3-215ENST00000578317 PPP6R1Q9UPN7 881 aa17.35■□□□□ 0.37
COPS3-215ENST00000578317 ADRA2BP18089 450 aa17.3■□□□□ 0.36
COPS3-215ENST00000578317 PIAS4Q8N2W9 510 aaPredicted RBP16.78■□□□□ 0.28
COPS3-215ENST00000578317 CCDC180Q9P1Z9 1646 aa16.31■□□□□ 0.2
COPS3-215ENST00000578317 MSH5O43196 834 aa16.21■□□□□ 0.19
COPS3-215ENST00000578317 PPP4R3CPQ6ZMV5 832 aa16.09■□□□□ 0.17
COPS3-215ENST00000578317 KCNA4P22459 653 aa16.04■□□□□ 0.16
COPS3-215ENST00000578317 ABCC9O60706 1549 aa15.77■□□□□ 0.12
COPS3-215ENST00000578317 SCAF1Q9H7N4 1312 aaKnown RBP15.69■□□□□ 0.1
COPS3-215ENST00000578317 MAPK8IP2Q13387 824 aaPredicted RBP15.65■□□□□ 0.1
COPS3-215ENST00000578317 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
COPS3-215ENST00000578317 ZCCHC6Q5VYS8 1495 aaKnown RBP15.59■□□□□ 0.09
COPS3-215ENST00000578317 CNKSR2Q8WXI2 1034 aa15.57■□□□□ 0.08
COPS3-215ENST00000578317 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
COPS3-215ENST00000578317 NPM3O75607 178 aaKnown RBP15.54■□□□□ 0.08
COPS3-215ENST00000578317 DCAF1Q9Y4B6 1507 aa15.48■□□□□ 0.07
COPS3-215ENST00000578317 DCAF8L2P0C7V8 631 aa15.46■□□□□ 0.07
COPS3-215ENST00000578317 MYO15BQ96JP2 1530 aa15.44■□□□□ 0.06
COPS3-215ENST00000578317 NACADO15069 1562 aa15.35■□□□□ 0.05
COPS3-215ENST00000578317 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
COPS3-215ENST00000578317 SLC4A1APQ9BWU0 796 aaKnown RBP15.25■□□□□ 0.03
COPS3-215ENST00000578317 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
COPS3-215ENST00000578317 RNF216Q9NWF9 866 aaPredicted RBP15.21■□□□□ 0.03
COPS3-215ENST00000578317 HOXD11P31277 338 aaPredicted RBP15.13■□□□□ 0.01
COPS3-215ENST00000578317 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
COPS3-215ENST00000578317 CSRNP3Q8WYN3 585 aa15.05■□□□□ -0
COPS3-215ENST00000578317 UNC13AQ9UPW8 1703 aa14.93□□□□□ -0.02
COPS3-215ENST00000578317 SHROOM4Q9ULL8 1493 aa14.9□□□□□ -0.02
COPS3-215ENST00000578317 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
COPS3-215ENST00000578317 ZBTB22O15209 634 aa14.82□□□□□ -0.04
COPS3-215ENST00000578317 BICRAQ9NZM4 1560 aa14.82□□□□□ -0.04
COPS3-215ENST00000578317 PABPN1Q86U42 306 aaKnown RBP eCLIP14.78□□□□□ -0.04
COPS3-215ENST00000578317 SLC4A2P04920 1241 aa14.66□□□□□ -0.06
COPS3-215ENST00000578317 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
COPS3-215ENST00000578317 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
COPS3-215ENST00000578317 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
COPS3-215ENST00000578317 POTEDQ86YR6 584 aa14.43□□□□□ -0.1
COPS3-215ENST00000578317 BAZ1AQ9NRL2 1556 aaPredicted RBP14.41□□□□□ -0.1
COPS3-215ENST00000578317 EIF4G1Q04637 1599 aaKnown RBP14.38□□□□□ -0.11
COPS3-215ENST00000578317 RSF1Q96T23 1441 aaPredicted RBP14.38□□□□□ -0.11
COPS3-215ENST00000578317 MROH2BQ7Z745 1585 aa14.35□□□□□ -0.11
COPS3-215ENST00000578317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.33□□□□□ -0.12
COPS3-215ENST00000578317 SMARCA4P51532 1647 aa14.33□□□□□ -0.12
COPS3-215ENST00000578317 MYCNP04198 464 aaPredicted RBP14.3□□□□□ -0.12
COPS3-215ENST00000578317 CC2D2AQ9P2K1 1620 aa14.28□□□□□ -0.12
COPS3-215ENST00000578317 SUPT5HO00267 1087 aaKnown RBP14.26□□□□□ -0.13
COPS3-215ENST00000578317 ATAD2BQ9ULI0 1458 aa14.24□□□□□ -0.13
COPS3-215ENST00000578317 PEG3Q9GZU2 1588 aa14.24□□□□□ -0.13
COPS3-215ENST00000578317 U3KPZ7 1027 aaPredicted RBP14.23□□□□□ -0.13
COPS3-215ENST00000578317 NCAPD3P42695 1498 aa14.22□□□□□ -0.13
COPS3-215ENST00000578317 SMARCA2P51531 1590 aa14.21□□□□□ -0.13
COPS3-215ENST00000578317 WIZO95785 1651 aa14.14□□□□□ -0.15
COPS3-215ENST00000578317 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
COPS3-215ENST00000578317 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
COPS3-215ENST00000578317 ATXN8OSP0DMR3 200 aa14.08□□□□□ -0.15
COPS3-215ENST00000578317 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
COPS3-215ENST00000578317 ATF5Q9Y2D1 282 aaPredicted RBP14.01□□□□□ -0.17
COPS3-215ENST00000578317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
COPS3-215ENST00000578317 HNRNPUL2Q1KMD3 747 aaKnown RBP13.99□□□□□ -0.17
COPS3-215ENST00000578317 RNF39Q9H2S5 420 aa13.99□□□□□ -0.17
COPS3-215ENST00000578317 SAMD1Q6SPF0 538 aaPredicted RBP13.98□□□□□ -0.17
COPS3-215ENST00000578317 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
COPS3-215ENST00000578317 CADPSQ9ULU8 1353 aa13.83□□□□□ -0.2
COPS3-215ENST00000578317 CFTRP13569 1480 aa13.8□□□□□ -0.2
COPS3-215ENST00000578317 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.21
COPS3-215ENST00000578317 SPINK5Q9NQ38 1064 aaPredicted RBP13.76□□□□□ -0.21
COPS3-215ENST00000578317 APLP2Q06481 763 aa13.74□□□□□ -0.21
COPS3-215ENST00000578317 NESP48681 1621 aa13.73□□□□□ -0.21
COPS3-215ENST00000578317 LAMC3Q9Y6N6 1575 aa13.7□□□□□ -0.22
COPS3-215ENST00000578317 ZNF219Q9P2Y4 722 aaPredicted RBP13.68□□□□□ -0.22
COPS3-215ENST00000578317 PDS5BQ9NTI5 1447 aa13.67□□□□□ -0.22
COPS3-215ENST00000578317 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
COPS3-215ENST00000578317 CAPN15O75808 1086 aa13.61□□□□□ -0.23
COPS3-215ENST00000578317 AMER1Q5JTC6 1135 aaPredicted RBP13.61□□□□□ -0.23
COPS3-215ENST00000578317 FANCD2Q9BXW9 1451 aa13.61□□□□□ -0.23
COPS3-215ENST00000578317 FKBP8Q14318 412 aa13.57□□□□□ -0.24
COPS3-215ENST00000578317 RTN4Q9NQC3 1192 aaKnown RBP13.56□□□□□ -0.24
COPS3-215ENST00000578317 KIF21AQ7Z4S6 1674 aa13.55□□□□□ -0.24
COPS3-215ENST00000578317 ERCC6Q03468 1493 aa13.54□□□□□ -0.24
COPS3-215ENST00000578317 CEP164Q9UPV0 1460 aa13.54□□□□□ -0.24
COPS3-215ENST00000578317 PRDM2Q13029 1718 aa13.54□□□□□ -0.24
COPS3-215ENST00000578317 WRNQ14191 1432 aaPredicted RBP eCLIP13.52□□□□□ -0.24
COPS3-215ENST00000578317 TRIM41Q8WV44 630 aa13.5□□□□□ -0.25
COPS3-215ENST00000578317 ABCC8Q09428 1581 aa13.49□□□□□ -0.25
COPS3-215ENST00000578317 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
COPS3-215ENST00000578317 POLA2Q14181 598 aa13.46□□□□□ -0.25
COPS3-215ENST00000578317 MRC2Q9UBG0 1479 aa13.45□□□□□ -0.26
COPS3-215ENST00000578317 CUX1P39880 1505 aa13.43□□□□□ -0.26
COPS3-215ENST00000578317 URB2Q14146 1524 aaKnown RBP13.43□□□□□ -0.26
COPS3-215ENST00000578317 ABCB7O75027 752 aa13.42□□□□□ -0.26
COPS3-215ENST00000578317 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
COPS3-215ENST00000578317 TOP2BQ02880 1626 aa13.4□□□□□ -0.26
COPS3-215ENST00000578317 DNMBPQ6XZF7 1577 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms