RNA–Protein interactions for RNA: ENST00000486032.1

COPS3-208, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 725 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-208ENST00000486032 AEBP2Q6ZN18 517 aaPredicted RBP21.58■■□□□ 1.05
COPS3-208ENST00000486032 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
COPS3-208ENST00000486032 SENP3Q9H4L4 574 aaPredicted RBP18.6■□□□□ 0.57
COPS3-208ENST00000486032 PHF23Q9BUL5 403 aaPredicted RBP18.23■□□□□ 0.51
COPS3-208ENST00000486032 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
COPS3-208ENST00000486032 FOXD1Q16676 465 aa17.4■□□□□ 0.38
COPS3-208ENST00000486032 MSH5O43196 834 aa16.63■□□□□ 0.25
COPS3-208ENST00000486032 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
COPS3-208ENST00000486032 PPP6R1Q9UPN7 881 aa15.64■□□□□ 0.09
COPS3-208ENST00000486032 ADRA2BP18089 450 aa15.57■□□□□ 0.08
COPS3-208ENST00000486032 PLPPR3Q6T4P5 718 aa15.47■□□□□ 0.07
COPS3-208ENST00000486032 CACNB1Q02641 598 aaPredicted RBP14.76□□□□□ -0.05
COPS3-208ENST00000486032 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
COPS3-208ENST00000486032 MAPK8IP2Q13387 824 aaPredicted RBP14.53□□□□□ -0.08
COPS3-208ENST00000486032 SCAF1Q9H7N4 1312 aaKnown RBP14.32□□□□□ -0.12
COPS3-208ENST00000486032 DCAF8L1A6NGE4 600 aa14.09□□□□□ -0.15
COPS3-208ENST00000486032 RNF39Q9H2S5 420 aa14.09□□□□□ -0.15
COPS3-208ENST00000486032 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
COPS3-208ENST00000486032 HOXD11P31277 338 aaPredicted RBP13.76□□□□□ -0.21
COPS3-208ENST00000486032 POTEHQ6S545 545 aa13.6□□□□□ -0.23
COPS3-208ENST00000486032 RNF216Q9NWF9 866 aaPredicted RBP13.47□□□□□ -0.25
COPS3-208ENST00000486032 DNAJC5BQ9UF47 199 aa13.47□□□□□ -0.25
COPS3-208ENST00000486032 PPP4R3CPQ6ZMV5 832 aa13.45□□□□□ -0.26
COPS3-208ENST00000486032 CNKSR2Q8WXI2 1034 aa13.4□□□□□ -0.26
COPS3-208ENST00000486032 NISCHQ9Y2I1 1504 aa13.35□□□□□ -0.27
COPS3-208ENST00000486032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
COPS3-208ENST00000486032 DSG3P32926 999 aa12.93□□□□□ -0.34
COPS3-208ENST00000486032 CAPN15O75808 1086 aa12.85□□□□□ -0.35
COPS3-208ENST00000486032 SPINK5Q9NQ38 1064 aaPredicted RBP12.79□□□□□ -0.36
COPS3-208ENST00000486032 NCBP3Q53F19 620 aaKnown RBP12.74□□□□□ -0.37
COPS3-208ENST00000486032 U3KPZ7 1027 aaPredicted RBP12.73□□□□□ -0.37
COPS3-208ENST00000486032 NPM3O75607 178 aaKnown RBP12.49□□□□□ -0.41
COPS3-208ENST00000486032 ABCB7O75027 752 aa12.45□□□□□ -0.42
COPS3-208ENST00000486032 TRHP20396 242 aaPredicted RBP12.44□□□□□ -0.42
COPS3-208ENST00000486032 CHRDL2Q6WN34 429 aa12.41□□□□□ -0.42
COPS3-208ENST00000486032 ZNF219Q9P2Y4 722 aaPredicted RBP12.41□□□□□ -0.42
COPS3-208ENST00000486032 RBM42Q9BTD8 480 aaKnown RBP12.4□□□□□ -0.42
COPS3-208ENST00000486032 APLP2Q06481 763 aa12.39□□□□□ -0.43
COPS3-208ENST00000486032 SP7Q8TDD2 431 aaPredicted RBP12.38□□□□□ -0.43
COPS3-208ENST00000486032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.17□□□□□ -0.46
COPS3-208ENST00000486032 HNRNPUL2Q1KMD3 747 aaKnown RBP12.17□□□□□ -0.46
COPS3-208ENST00000486032 SLC4A2P04920 1241 aa12.11□□□□□ -0.47
COPS3-208ENST00000486032 SAMD1Q6SPF0 538 aaPredicted RBP12.03□□□□□ -0.48
COPS3-208ENST00000486032 HAX1O00165 279 aa11.97□□□□□ -0.49
COPS3-208ENST00000486032 PIP4P2Q8N4L2 257 aa11.94□□□□□ -0.5
COPS3-208ENST00000486032 AKT1S1Q96B36 256 aa11.94□□□□□ -0.5
COPS3-208ENST00000486032 POLA2Q14181 598 aa11.93□□□□□ -0.5
COPS3-208ENST00000486032 CCDC180Q9P1Z9 1646 aa11.84□□□□□ -0.51
COPS3-208ENST00000486032 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
COPS3-208ENST00000486032 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
COPS3-208ENST00000486032 EVX2Q03828 476 aa11.7□□□□□ -0.54
COPS3-208ENST00000486032 ABCC9O60706 1549 aa11.7□□□□□ -0.54
COPS3-208ENST00000486032 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
COPS3-208ENST00000486032 ZBTB12Q9Y330 459 aaPredicted RBP11.65□□□□□ -0.54
COPS3-208ENST00000486032 LHX8Q68G74 356 aa11.61□□□□□ -0.55
COPS3-208ENST00000486032 MYCNP04198 464 aaPredicted RBP11.6□□□□□ -0.55
COPS3-208ENST00000486032 OSCARQ8IYS5 282 aa11.55□□□□□ -0.56
COPS3-208ENST00000486032 KCNA4P22459 653 aa11.54□□□□□ -0.56
COPS3-208ENST00000486032 PLSCR2Q9NRY7 297 aa11.54□□□□□ -0.56
COPS3-208ENST00000486032 GABBR2O75899 941 aa11.43□□□□□ -0.58
COPS3-208ENST00000486032 C19orf67A6NJJ6 358 aa11.4□□□□□ -0.58
COPS3-208ENST00000486032 PRKAR2AP13861 404 aaKnown RBP11.39□□□□□ -0.59
COPS3-208ENST00000486032 ATF5Q9Y2D1 282 aaPredicted RBP11.34□□□□□ -0.59
COPS3-208ENST00000486032 CLEC11AQ9Y240 323 aa11.24□□□□□ -0.61
COPS3-208ENST00000486032 SPDYE2BA6NHP3 402 aa11.21□□□□□ -0.61
COPS3-208ENST00000486032 SPDYE6P0CI01 402 aa11.21□□□□□ -0.61
COPS3-208ENST00000486032 SPDYE2Q495Y8 402 aa11.21□□□□□ -0.61
COPS3-208ENST00000486032 SPDYE1Q8NFV5 336 aaPredicted RBP11.21□□□□□ -0.61
COPS3-208ENST00000486032 ZCCHC6Q5VYS8 1495 aaKnown RBP11.14□□□□□ -0.63
COPS3-208ENST00000486032 POTEIP0CG38 1075 aa11.14□□□□□ -0.63
COPS3-208ENST00000486032 DCAF8L2P0C7V8 631 aa11.13□□□□□ -0.63
COPS3-208ENST00000486032 RB1CC1Q8TDY2 1594 aa11.12□□□□□ -0.63
COPS3-208ENST00000486032 NACADO15069 1562 aa11.1□□□□□ -0.63
COPS3-208ENST00000486032 CHADLQ6NUI6 762 aa11.08□□□□□ -0.64
COPS3-208ENST00000486032 CLCN6P51797 869 aa11.04□□□□□ -0.64
COPS3-208ENST00000486032 FOXD4L1Q9NU39 408 aa11.04□□□□□ -0.64
COPS3-208ENST00000486032 FBLN2P98095 1184 aa11.03□□□□□ -0.64
COPS3-208ENST00000486032 UNC13AQ9UPW8 1703 aa11.03□□□□□ -0.64
COPS3-208ENST00000486032 DCBLD2Q96PD2 775 aa10.99□□□□□ -0.65
COPS3-208ENST00000486032 MYO15BQ96JP2 1530 aa10.99□□□□□ -0.65
COPS3-208ENST00000486032 CD44P16070 742 aaKnown RBP10.98□□□□□ -0.65
COPS3-208ENST00000486032 POTEMA6NI47 508 aa10.97□□□□□ -0.65
COPS3-208ENST00000486032 DCAF1Q9Y4B6 1507 aa10.97□□□□□ -0.65
COPS3-208ENST00000486032 ZNF692Q9BU19 519 aaPredicted RBP10.96□□□□□ -0.65
COPS3-208ENST00000486032 PRR29P0C7W0 189 aa10.95□□□□□ -0.66
COPS3-208ENST00000486032 BICRAQ9NZM4 1560 aa10.94□□□□□ -0.66
COPS3-208ENST00000486032 SSUH2Q9Y2M2 353 aa10.93□□□□□ -0.66
COPS3-208ENST00000486032 PABPN1Q86U42 306 aaKnown RBP eCLIP10.92□□□□□ -0.66
COPS3-208ENST00000486032 SCRIBQ14160 1630 aa10.91□□□□□ -0.66
COPS3-208ENST00000486032 POTEGQ6S5H5 508 aa10.91□□□□□ -0.66
COPS3-208ENST00000486032 OTUD5Q96G74 571 aa10.9□□□□□ -0.66
COPS3-208ENST00000486032 PCDH10Q9P2E7 1040 aa10.88□□□□□ -0.67
COPS3-208ENST00000486032 FARP1Q9Y4F1 1045 aaPredicted RBP10.84□□□□□ -0.67
COPS3-208ENST00000486032 ATXN8OSP0DMR3 200 aa10.81□□□□□ -0.68
COPS3-208ENST00000486032 MKRN4PQ13434 485 aaPredicted RBP10.78□□□□□ -0.68
COPS3-208ENST00000486032 SLC4A1APQ9BWU0 796 aaKnown RBP10.77□□□□□ -0.69
COPS3-208ENST00000486032 POTEB2H3BUK9 544 aa10.76□□□□□ -0.69
COPS3-208ENST00000486032 ZNF579Q8NAF0 562 aaKnown RBP10.76□□□□□ -0.69
COPS3-208ENST00000486032 ZRANB1Q9UGI0 708 aa10.71□□□□□ -0.69
COPS3-208ENST00000486032 GALR2O43603 387 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms