Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 LPP-208ENST00000448637 5835 ntTSL 5 BASIC9.61□□□□□ -0.873e-6■■■■□ 24.7
SFPQP23246 LPP-206ENST00000430340 521 ntTSL 312.42□□□□□ -0.424e-6■■■■□ 24.5
SFPQP23246 LPP-209ENST00000454789 343 ntTSL 59.9□□□□□ -0.824e-6■■■■□ 24.5
SFPQP23246 LPP-205ENST00000426274 386 ntTSL 58.28□□□□□ -1.084e-6■■■■□ 24.5
SFPQP23246 LPP-201ENST00000414139 502 ntTSL 47.73□□□□□ -1.174e-6■■■■□ 24.5
SFPQP23246 SHANK2-217ENST00000498519 510 ntTSL 315.41■□□□□ 0.063e-6■■■■□ 24.5
SFPQP23246 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.136e-11■■■■□ 24.5
SFPQP23246 RORA-206ENST00000557822 545 ntTSL 417.22■□□□□ 0.356e-11■■■■□ 24.5
SFPQP23246 RORA-210ENST00000559343 577 ntTSL 414.04□□□□□ -0.166e-11■■■■□ 24.5
SFPQP23246 RORA-212ENST00000560004 544 ntTSL 412.56□□□□□ -0.46e-11■■■■□ 24.5
SFPQP23246 RORA-207ENST00000558234 3910 ntTSL 1 (best)12.52□□□□□ -0.416e-11■■■■□ 24.5
SFPQP23246 RORA-205ENST00000551975 749 ntTSL 311.21□□□□□ -0.616e-11■■■■□ 24.5
SFPQP23246 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC9.21□□□□□ -0.936e-11■■■■□ 24.5
SFPQP23246 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC8.01□□□□□ -1.136e-11■■■■□ 24.5
SFPQP23246 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.166e-11■■■■□ 24.5
SFPQP23246 ATP1A1-208ENST00000488733 1728 ntTSL 222.41■■□□□ 1.181e-6■■■■□ 24.2
SFPQP23246 ATP1A1-204ENST00000418797 654 ntTSL 322.31■■□□□ 1.161e-6■■■■□ 24.2
SFPQP23246 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.031e-6■■■■□ 24.2
SFPQP23246 ATP1A1-211ENST00000537345 3763 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.311e-6■■■■□ 24.2
SFPQP23246 TSPAN4-217ENST00000527644 968 ntTSL 229.39■■■□□ 2.32e-6■■■■□ 24.2
SFPQP23246 ZXDC-204ENST00000515545 2635 ntTSL 1 (best)18.59■□□□□ 0.572e-6■■■■□ 24.1
SFPQP23246 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.552e-6■■■■□ 24.1
SFPQP23246 PLXNB2-203ENST00000425954 609 ntTSL 219.45■□□□□ 0.77e-6■■■■□ 24.1
SFPQP23246 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.167e-6■■■■□ 24.1
SFPQP23246 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.147e-6■■■■□ 24.1
SFPQP23246 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.05■■■□□ 2.721e-6■■■■□ 24
SFPQP23246 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.51e-6■■■■□ 24
SFPQP23246 FAM19A5-205ENST00000473898 897 ntTSL 222.02■■□□□ 1.121e-6■■■■□ 24
SFPQP23246 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.58■□□□□ 0.561e-6■■■■□ 24
SFPQP23246 FAM19A5-201ENST00000336769 546 ntTSL 413.44□□□□□ -0.261e-6■■■■□ 24
SFPQP23246 RGS12-210ENST00000506631 1530 ntTSL 1 (best)26.72■■□□□ 1.872e-6■■■■□ 24
SFPQP23246 BCL6-205ENST00000438077 709 ntTSL 323.14■■□□□ 1.292e-12■■■■□ 24
SFPQP23246 RGS12-224ENST00000514268 2751 ntTSL 521.88■■□□□ 1.092e-6■■■■□ 24
SFPQP23246 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.672e-6■■■■□ 24
SFPQP23246 RXRA-201ENST00000356384 5770 ntTSL 518.75■□□□□ 0.592e-6■■■■□ 24
SFPQP23246 RGS12-222ENST00000513784 710 ntTSL 218.65■□□□□ 0.582e-6■■■■□ 24
SFPQP23246 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.382e-6■■■■□ 24
SFPQP23246 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.29■□□□□ 0.362e-6■■■■□ 24
SFPQP23246 COL4A5-203ENST00000470339 782 ntTSL 316.47■□□□□ 0.232e-6■■■■□ 24
SFPQP23246 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.22e-6■■■■□ 24
SFPQP23246 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.062e-6■■■■□ 24
SFPQP23246 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.042e-6■■■■□ 24
SFPQP23246 TNS3-211ENST00000474346 775 ntTSL 314.75□□□□□ -0.052e-6■■■■□ 24
SFPQP23246 PRRC2C-208ENST00000476522 1931 ntTSL 514.07□□□□□ -0.162e-6■■■■□ 24
SFPQP23246 DLEU1-210ENST00000469095 1736 ntTSL 513.24□□□□□ -0.292e-6■■■■□ 24
SFPQP23246 COL4A5-201ENST00000328300 6483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.312e-6■■■■□ 24
SFPQP23246 COL4A5-202ENST00000361603 6469 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.312e-6■■■■□ 24
SFPQP23246 DLEU1-204ENST00000462427 1119 ntTSL 1 (best)12.72□□□□□ -0.372e-6■■■■□ 24
SFPQP23246 DLEU1-233ENST00000491482 431 ntTSL 1 (best)12.29□□□□□ -0.442e-6■■■■□ 24
SFPQP23246 DLEU1-213ENST00000470593 668 ntTSL 1 (best)12.18□□□□□ -0.462e-6■■■■□ 24
SFPQP23246 DLEU1-217ENST00000474630 518 ntTSL 511.92□□□□□ -0.52e-6■■■■□ 24
SFPQP23246 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC10.94□□□□□ -0.662e-6■■■■□ 24
SFPQP23246 PRRC2C-206ENST00000467601 717 ntTSL 210.36□□□□□ -0.752e-6■■■■□ 24
SFPQP23246 DLEU1-227ENST00000484869 1652 ntTSL 510.18□□□□□ -0.782e-6■■■■□ 24
SFPQP23246 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.912e-6■■■■□ 24
SFPQP23246 DLEU1-214ENST00000470726 508 ntTSL 58.62□□□□□ -1.032e-6■■■■□ 24
SFPQP23246 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.122e-6■■■■□ 24
SFPQP23246 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.162e-6■■■■□ 24
SFPQP23246 DLEU1-221ENST00000479420 612 ntTSL 56.87□□□□□ -1.312e-6■■■■□ 24
SFPQP23246 ZNF292-205ENST00000466062 838 ntTSL 56.5□□□□□ -1.372e-6■■■■□ 24
SFPQP23246 RGS12-219ENST00000511805 552 ntTSL 1 (best)5.82□□□□□ -1.482e-6■■■■□ 24
SFPQP23246 DLEU1-202ENST00000460525 1031 ntTSL 1 (best)5.46□□□□□ -1.542e-6■■■■□ 24
SFPQP23246 SHANK2-214ENST00000468619 2775 ntTSL 215.6■□□□□ 0.094e-6■■■■□ 23.9
SFPQP23246 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.12e-6■■■■□ 23.9
SFPQP23246 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.742e-6■■■■□ 23.9
SFPQP23246 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.82■■□□□ 1.722e-6■■■■□ 23.9
SFPQP23246 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.352e-6■■■■□ 23.9
SFPQP23246 TSPAN4-219ENST00000530404 818 ntTSL 523.28■■□□□ 1.322e-6■■■■□ 23.9
SFPQP23246 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.12e-6■■■■□ 23.9
SFPQP23246 TSPAN4-210ENST00000464987 2205 ntTSL 521.38■■□□□ 1.012e-6■■■■□ 23.9
SFPQP23246 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.922e-6■■■■□ 23.9
SFPQP23246 TSPAN4-215ENST00000525334 860 ntTSL 320.62■□□□□ 0.892e-6■■■■□ 23.9
SFPQP23246 TSPAN4-216ENST00000526055 469 ntTSL 220.6■□□□□ 0.892e-6■■■■□ 23.9
SFPQP23246 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.48■□□□□ 0.712e-6■■■■□ 23.9
SFPQP23246 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.542e-6■■■■□ 23.9
SFPQP23246 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.13■□□□□ 0.492e-6■■■■□ 23.9
SFPQP23246 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.6■□□□□ 0.412e-6■■■■□ 23.9
SFPQP23246 TSPAN4-213ENST00000524895 401 ntTSL 417.37■□□□□ 0.372e-6■■■■□ 23.9
SFPQP23246 TSPAN4-220ENST00000532375 518 ntTSL 515.45■□□□□ 0.062e-6■■■■□ 23.9
SFPQP23246 MAD1L1-209ENST00000438959 839 ntTSL 315.45■□□□□ 0.063e-6■■■■□ 23.8
SFPQP23246 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.456e-7■■■■□ 23.7
SFPQP23246 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.446e-7■■■■□ 23.7
SFPQP23246 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.4■□□□□ 0.386e-7■■■■□ 23.7
SFPQP23246 CTIF-206ENST00000588345 584 ntTSL 320.5■□□□□ 0.871e-8■■■■□ 23.7
SFPQP23246 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.822e-7■■■■□ 23.6
SFPQP23246 RPS6KA3-202ENST00000438357 530 ntTSL 516.7■□□□□ 0.262e-7■■■■□ 23.6
SFPQP23246 RPS6KA3-206ENST00000492128 553 ntTSL 410.7□□□□□ -0.72e-7■■■■□ 23.6
SFPQP23246 HDAC4-204ENST00000446876 554 ntTSL 416.49■□□□□ 0.234e-6■■■■□ 23.6
SFPQP23246 HDAC4-214ENST00000535493 2743 ntTSL 215.6■□□□□ 0.094e-6■■■■□ 23.6
SFPQP23246 HDAC4-208ENST00000463007 3158 ntTSL 1 (best)14.44□□□□□ -0.14e-6■■■■□ 23.6
SFPQP23246 PLXNB2-205ENST00000432455 1620 ntTSL 520.08■□□□□ 0.87e-6■■■■□ 23.6
SFPQP23246 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.464e-7■■■■□ 23.5
SFPQP23246 TMEM51-206ENST00000451326 766 ntTSL 316.43■□□□□ 0.224e-7■■■■□ 23.5
SFPQP23246 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.214e-7■■■■□ 23.5
SFPQP23246 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.591e-6■■■■□ 23.2
SFPQP23246 YWHAZ-221ENST00000523131 567 ntTSL 523.09■■□□□ 1.291e-6■■■■□ 23.2
SFPQP23246 YWHAZ-208ENST00000418997 996 ntTSL 222.57■■□□□ 1.21e-6■■■■□ 23.2
SFPQP23246 YWHAZ-223ENST00000523938 626 ntTSL 522.29■■□□□ 1.161e-6■■■■□ 23.2
SFPQP23246 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.151e-6■■■■□ 23.2
SFPQP23246 YWHAZ-210ENST00000437293 701 ntTSL 321.39■■□□□ 1.011e-6■■■■□ 23.2
Retrieved 100 of 4,991 protein–RNA pairs in 98.6 ms