RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.79
HDAC4-214ENST00000535493 SHROOM4Q9ULL8 1493 aa23.39■■□□□ 1.33
HDAC4-214ENST00000535493 SUPT5HO00267 1087 aaKnown RBP23.13■■□□□ 1.29
HDAC4-214ENST00000535493 MYO15BQ96JP2 1530 aa22.47■■□□□ 1.19
HDAC4-214ENST00000535493 DCAF8L2P0C7V8 631 aa22.44■■□□□ 1.18
HDAC4-214ENST00000535493 HRCP23327 699 aa22.44■■□□□ 1.18
HDAC4-214ENST00000535493 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
HDAC4-214ENST00000535493 PCGF6Q9BYE7 350 aa22.41■■□□□ 1.18
HDAC4-214ENST00000535493 PPARGC1BQ86YN6 1023 aaKnown RBP22.29■■□□□ 1.16
HDAC4-214ENST00000535493 ZCCHC6Q5VYS8 1495 aaKnown RBP22.23■■□□□ 1.15
HDAC4-214ENST00000535493 LOC105371045A0A1W2PR82 267 aa22.07■■□□□ 1.12
HDAC4-214ENST00000535493 CCDC180Q9P1Z9 1646 aa21.76■■□□□ 1.07
HDAC4-214ENST00000535493 DCAF1Q9Y4B6 1507 aa21.61■■□□□ 1.05
HDAC4-214ENST00000535493 TRIM26Q12899 539 aaPredicted RBP21.57■■□□□ 1.04
HDAC4-214ENST00000535493 EHMT2Q96KQ7 1210 aa21.55■■□□□ 1.04
HDAC4-214ENST00000535493 FAM9AQ8IZU1 332 aaPredicted RBP21.47■■□□□ 1.03
HDAC4-214ENST00000535493 TRIM41Q8WV44 630 aa21.29■■□□□ 1
HDAC4-214ENST00000535493 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
HDAC4-214ENST00000535493 ZEB1P37275 1124 aaPredicted RBP21.1■□□□□ 0.97
HDAC4-214ENST00000535493 RSF1Q96T23 1441 aaPredicted RBP21.1■□□□□ 0.97
HDAC4-214ENST00000535493 ABCC9O60706 1549 aa21.03■□□□□ 0.96
HDAC4-214ENST00000535493 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
HDAC4-214ENST00000535493 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
HDAC4-214ENST00000535493 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.94■□□□□ 0.94
HDAC4-214ENST00000535493 TTBK1Q5TCY1 1321 aaPredicted RBP20.89■□□□□ 0.93
HDAC4-214ENST00000535493 CCER1Q8TC90 406 aaPredicted RBP20.79■□□□□ 0.92
HDAC4-214ENST00000535493 PELP1Q8IZL8 1130 aaKnown RBP20.74■□□□□ 0.91
HDAC4-214ENST00000535493 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
HDAC4-214ENST00000535493 NEUROD1Q13562 356 aa20.71■□□□□ 0.91
HDAC4-214ENST00000535493 ACIN1Q9UKV3 1341 aaKnown RBP20.62■□□□□ 0.89
HDAC4-214ENST00000535493 MROH2BQ7Z745 1585 aa20.6■□□□□ 0.89
HDAC4-214ENST00000535493 DIEXFQ68CQ4 756 aaKnown RBP20.57■□□□□ 0.88
HDAC4-214ENST00000535493 GTF3C3Q9Y5Q9 886 aa20.55■□□□□ 0.88
HDAC4-214ENST00000535493 WIZO95785 1651 aa20.5■□□□□ 0.87
HDAC4-214ENST00000535493 YTHDC1Q96MU7 727 aaKnown RBP20.4■□□□□ 0.86
HDAC4-214ENST00000535493 CENPBP07199 599 aaPredicted RBP20.36■□□□□ 0.85
HDAC4-214ENST00000535493 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
HDAC4-214ENST00000535493 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
HDAC4-214ENST00000535493 UBTFP17480 764 aaKnown RBP20.31■□□□□ 0.84
HDAC4-214ENST00000535493 SOGA1O94964 1423 aa20.27■□□□□ 0.84
HDAC4-214ENST00000535493 CEP162Q5TB80 1403 aa20.27■□□□□ 0.83
HDAC4-214ENST00000535493 HNRNPUL2Q1KMD3 747 aaKnown RBP20.22■□□□□ 0.83
HDAC4-214ENST00000535493 ZNF316A6NFI3 1004 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-214ENST00000535493 RUSC2Q8N2Y8 1516 aa20.19■□□□□ 0.82
HDAC4-214ENST00000535493 NACADO15069 1562 aa20.17■□□□□ 0.82
HDAC4-214ENST00000535493 BAZ1AQ9NRL2 1556 aaPredicted RBP20.16■□□□□ 0.82
HDAC4-214ENST00000535493 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
HDAC4-214ENST00000535493 MIER1Q8N108 512 aa20.14■□□□□ 0.82
HDAC4-214ENST00000535493 CSRNP3Q8WYN3 585 aa20.14■□□□□ 0.82
HDAC4-214ENST00000535493 EIF4G1Q04637 1599 aaKnown RBP20.14■□□□□ 0.81
HDAC4-214ENST00000535493 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.81
HDAC4-214ENST00000535493 TNIKQ9UKE5 1360 aa20.07■□□□□ 0.8
HDAC4-214ENST00000535493 TOP2AP11388 1531 aaKnown RBP19.96■□□□□ 0.79
HDAC4-214ENST00000535493 SMARCA2P51531 1590 aa19.95■□□□□ 0.78
HDAC4-214ENST00000535493 PABPN1Q86U42 306 aaKnown RBP eCLIP19.93■□□□□ 0.78
HDAC4-214ENST00000535493 SMARCA4P51532 1647 aa19.87■□□□□ 0.77
HDAC4-214ENST00000535493 GOLGA3Q08378 1498 aa19.87■□□□□ 0.77
HDAC4-214ENST00000535493 APLP2Q06481 763 aa19.82■□□□□ 0.76
HDAC4-214ENST00000535493 CLIP1P30622 1438 aa19.79■□□□□ 0.76
HDAC4-214ENST00000535493 EEA1Q15075 1411 aa19.79■□□□□ 0.76
HDAC4-214ENST00000535493 CEP164Q9UPV0 1460 aa19.68■□□□□ 0.74
HDAC4-214ENST00000535493 RAPGEF2Q9Y4G8 1499 aa19.68■□□□□ 0.74
HDAC4-214ENST00000535493 MYT1Q01538 1121 aa19.67■□□□□ 0.74
HDAC4-214ENST00000535493 VPS8Q8N3P4 1428 aa19.66■□□□□ 0.74
HDAC4-214ENST00000535493 SYNJ1O43426 1573 aa19.66■□□□□ 0.74
HDAC4-214ENST00000535493 ITGAEP38570 1179 aa19.62■□□□□ 0.73
HDAC4-214ENST00000535493 KANK4Q5T7N3 995 aaPredicted RBP19.62■□□□□ 0.73
HDAC4-214ENST00000535493 SUPT16HQ9Y5B9 1047 aaKnown RBP19.6■□□□□ 0.73
HDAC4-214ENST00000535493 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
HDAC4-214ENST00000535493 DHX57Q6P158 1386 aaKnown RBP19.56■□□□□ 0.72
HDAC4-214ENST00000535493 KCNH8Q96L42 1107 aa19.56■□□□□ 0.72
HDAC4-214ENST00000535493 KIF21BO75037 1637 aa19.54■□□□□ 0.72
HDAC4-214ENST00000535493 BCANQ96GW7 911 aa19.45■□□□□ 0.7
HDAC4-214ENST00000535493 BAZ1BQ9UIG0 1483 aaKnown RBP19.4■□□□□ 0.7
HDAC4-214ENST00000535493 TSHZ2Q9NRE2 1034 aa19.39■□□□□ 0.7
HDAC4-214ENST00000535493 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.69
HDAC4-214ENST00000535493 ATAD2BQ9ULI0 1458 aa19.36■□□□□ 0.69
HDAC4-214ENST00000535493 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
HDAC4-214ENST00000535493 CLSPNQ9HAW4 1339 aa19.35■□□□□ 0.69
HDAC4-214ENST00000535493 HIRIP3Q9BW71 556 aaPredicted RBP19.34■□□□□ 0.69
HDAC4-214ENST00000535493 DDX10Q13206 875 aaKnown RBP19.3■□□□□ 0.68
HDAC4-214ENST00000535493 SIN3AQ96ST3 1273 aa19.28■□□□□ 0.68
HDAC4-214ENST00000535493 PEG3Q9GZU2 1588 aa19.26■□□□□ 0.67
HDAC4-214ENST00000535493 CCNB3Q8WWL7 1395 aa19.26■□□□□ 0.67
HDAC4-214ENST00000535493 FKBP8Q14318 412 aa19.24■□□□□ 0.67
HDAC4-214ENST00000535493 PRXQ9BXM0 1461 aa19.24■□□□□ 0.67
HDAC4-214ENST00000535493 RAB3GAP2Q9H2M9 1393 aa19.22■□□□□ 0.67
HDAC4-214ENST00000535493 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
HDAC4-214ENST00000535493 RRBP1Q9P2E9 1410 aaKnown RBP19.21■□□□□ 0.67
HDAC4-214ENST00000535493 ATP1B4Q9UN42 357 aaPredicted RBP19.2■□□□□ 0.66
HDAC4-214ENST00000535493 FAM50AQ14320 339 aaKnown RBP19.19■□□□□ 0.66
HDAC4-214ENST00000535493 TRIM52Q96A61 297 aa19.19■□□□□ 0.66
HDAC4-214ENST00000535493 P3H3Q8IVL6 736 aa19.17■□□□□ 0.66
HDAC4-214ENST00000535493 ANP32EQ9BTT0 268 aa19.15■□□□□ 0.66
HDAC4-214ENST00000535493 ARHGAP35Q9NRY4 1499 aa19.14■□□□□ 0.65
HDAC4-214ENST00000535493 ERICH3Q5RHP9 1530 aa19.11■□□□□ 0.65
HDAC4-214ENST00000535493 KIF27Q86VH2 1401 aa19.1■□□□□ 0.65
HDAC4-214ENST00000535493 MAPKBP1O60336 1514 aa19.1■□□□□ 0.65
HDAC4-214ENST00000535493 CUX1P39880 1505 aa19.09■□□□□ 0.65
HDAC4-214ENST00000535493 WDR97A6NE52 1622 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms