RNA–Protein interactions for RNA: ENST00000328300.10

COL4A5-201, Transcript of collagen type IV alpha 5 chain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene COL4A5, Length 6,483 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5-201ENST00000328300 NISCHQ9Y2I1 1504 aa20.63■□□□□ 0.89
COL4A5-201ENST00000328300 DCAF8L2P0C7V8 631 aa19.94■□□□□ 0.78
COL4A5-201ENST00000328300 SUPT5HO00267 1087 aaKnown RBP18.83■□□□□ 0.61
COL4A5-201ENST00000328300 SHROOM4Q9ULL8 1493 aa18.68■□□□□ 0.58
COL4A5-201ENST00000328300 FAM9AQ8IZU1 332 aaPredicted RBP18.11■□□□□ 0.49
COL4A5-201ENST00000328300 APLP2Q06481 763 aa18.04■□□□□ 0.48
COL4A5-201ENST00000328300 TRIM41Q8WV44 630 aa17.76■□□□□ 0.43
COL4A5-201ENST00000328300 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
COL4A5-201ENST00000328300 ABCC9O60706 1549 aa17.45■□□□□ 0.38
COL4A5-201ENST00000328300 PELP1Q8IZL8 1130 aaKnown RBP17.45■□□□□ 0.38
COL4A5-201ENST00000328300 ZEB1P37275 1124 aaPredicted RBP17.44■□□□□ 0.38
COL4A5-201ENST00000328300 UBTFP17480 764 aaKnown RBP17.41■□□□□ 0.38
COL4A5-201ENST00000328300 CCDC180Q9P1Z9 1646 aa17.4■□□□□ 0.38
COL4A5-201ENST00000328300 PCGF6Q9BYE7 350 aa17.19■□□□□ 0.34
COL4A5-201ENST00000328300 ATP1B4Q9UN42 357 aaPredicted RBP17.18■□□□□ 0.34
COL4A5-201ENST00000328300 RANGAP1P46060 587 aaPredicted RBP17.16■□□□□ 0.34
COL4A5-201ENST00000328300 ZCCHC6Q5VYS8 1495 aaKnown RBP17.15■□□□□ 0.34
COL4A5-201ENST00000328300 CCER1Q8TC90 406 aaPredicted RBP17.08■□□□□ 0.32
COL4A5-201ENST00000328300 TTBK1Q5TCY1 1321 aaPredicted RBP17.07■□□□□ 0.32
COL4A5-201ENST00000328300 CHIC1Q5VXU3 224 aa17.06■□□□□ 0.32
COL4A5-201ENST00000328300 PABPN1Q86U42 306 aaKnown RBP eCLIP17.01■□□□□ 0.31
COL4A5-201ENST00000328300 TRIM26Q12899 539 aaPredicted RBP16.97■□□□□ 0.31
COL4A5-201ENST00000328300 CENPBP07199 599 aaPredicted RBP16.9■□□□□ 0.3
COL4A5-201ENST00000328300 RB1CC1Q8TDY2 1594 aa16.87■□□□□ 0.29
COL4A5-201ENST00000328300 SCRIBQ14160 1630 aa16.83■□□□□ 0.28
COL4A5-201ENST00000328300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.79■□□□□ 0.28
COL4A5-201ENST00000328300 HNRNPUL2Q1KMD3 747 aaKnown RBP16.79■□□□□ 0.28
COL4A5-201ENST00000328300 NACADO15069 1562 aa16.79■□□□□ 0.28
COL4A5-201ENST00000328300 MYT1Q01538 1121 aa16.74■□□□□ 0.27
COL4A5-201ENST00000328300 ERICH6Q7L0X2 663 aa16.73■□□□□ 0.27
COL4A5-201ENST00000328300 DCAF1Q9Y4B6 1507 aa16.69■□□□□ 0.26
COL4A5-201ENST00000328300 LOC105371045A0A1W2PR82 267 aa16.63■□□□□ 0.25
COL4A5-201ENST00000328300 MYT1LQ9UL68 1186 aa16.62■□□□□ 0.25
COL4A5-201ENST00000328300 NEFLP07196 543 aa16.55■□□□□ 0.24
COL4A5-201ENST00000328300 PPARGC1BQ86YN6 1023 aaKnown RBP16.52■□□□□ 0.24
COL4A5-201ENST00000328300 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
COL4A5-201ENST00000328300 ITGAEP38570 1179 aa16.51■□□□□ 0.23
COL4A5-201ENST00000328300 HRCP23327 699 aa16.47■□□□□ 0.23
COL4A5-201ENST00000328300 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
COL4A5-201ENST00000328300 CDK11AQ9UQ88 783 aaPredicted RBP16.38■□□□□ 0.21
COL4A5-201ENST00000328300 MYO15BQ96JP2 1530 aa16.34■□□□□ 0.21
COL4A5-201ENST00000328300 EEA1Q15075 1411 aa16.34■□□□□ 0.21
COL4A5-201ENST00000328300 FBLN2P98095 1184 aa16.33■□□□□ 0.2
COL4A5-201ENST00000328300 BAZ1AQ9NRL2 1556 aaPredicted RBP16.31■□□□□ 0.2
COL4A5-201ENST00000328300 YTHDC1Q96MU7 727 aaKnown RBP16.3■□□□□ 0.2
COL4A5-201ENST00000328300 RSF1Q96T23 1441 aaPredicted RBP16.3■□□□□ 0.2
COL4A5-201ENST00000328300 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.2
COL4A5-201ENST00000328300 TRIM52Q96A61 297 aa16.27■□□□□ 0.19
COL4A5-201ENST00000328300 POLR3GLQ9BT43 218 aa16.17■□□□□ 0.18
COL4A5-201ENST00000328300 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
COL4A5-201ENST00000328300 WRNQ14191 1432 aaPredicted RBP eCLIP16.09■□□□□ 0.17
COL4A5-201ENST00000328300 NPM1P06748 294 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL4A5-201ENST00000328300 GOLGA3Q08378 1498 aa16.07■□□□□ 0.16
COL4A5-201ENST00000328300 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
COL4A5-201ENST00000328300 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
COL4A5-201ENST00000328300 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
COL4A5-201ENST00000328300 DIEXFQ68CQ4 756 aaKnown RBP16.02■□□□□ 0.16
COL4A5-201ENST00000328300 NEUROD1Q13562 356 aa16■□□□□ 0.15
COL4A5-201ENST00000328300 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
COL4A5-201ENST00000328300 CLIP1P30622 1438 aa15.99■□□□□ 0.15
COL4A5-201ENST00000328300 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
COL4A5-201ENST00000328300 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
COL4A5-201ENST00000328300 ANP32CO43423 234 aa15.95■□□□□ 0.14
COL4A5-201ENST00000328300 ZNF777Q9ULD5 760 aaPredicted RBP15.93■□□□□ 0.14
COL4A5-201ENST00000328300 MTUS2Q5JR59 1369 aa15.92■□□□□ 0.14
COL4A5-201ENST00000328300 DAXXQ9UER7 740 aaPredicted RBP15.91■□□□□ 0.14
COL4A5-201ENST00000328300 ZNF316A6NFI3 1004 aaPredicted RBP15.9■□□□□ 0.14
COL4A5-201ENST00000328300 TNIKQ9UKE5 1360 aa15.9■□□□□ 0.14
COL4A5-201ENST00000328300 ESF1Q9H501 851 aaKnown RBP15.9■□□□□ 0.14
COL4A5-201ENST00000328300 CECR2Q9BXF3 1484 aa15.89■□□□□ 0.13
COL4A5-201ENST00000328300 ERCC6Q03468 1493 aa15.87■□□□□ 0.13
COL4A5-201ENST00000328300 ZNF326Q5BKZ1 582 aaKnown RBP15.85■□□□□ 0.13
COL4A5-201ENST00000328300 TONSLQ96HA7 1378 aa15.85■□□□□ 0.13
COL4A5-201ENST00000328300 TSPY4P0CV99 314 aa15.84■□□□□ 0.13
COL4A5-201ENST00000328300 TSPY10P0CW01 314 aa15.84■□□□□ 0.13
COL4A5-201ENST00000328300 ARID3CA6NKF2 412 aa15.84■□□□□ 0.13
COL4A5-201ENST00000328300 CEP162Q5TB80 1403 aa15.82■□□□□ 0.12
COL4A5-201ENST00000328300 PDS5BQ9NTI5 1447 aa15.82■□□□□ 0.12
COL4A5-201ENST00000328300 TOP2AP11388 1531 aaKnown RBP15.82■□□□□ 0.12
COL4A5-201ENST00000328300 NEFMP07197 916 aa15.79■□□□□ 0.12
COL4A5-201ENST00000328300 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
COL4A5-201ENST00000328300 PLEKHD1A6NEE1 506 aa15.77■□□□□ 0.12
COL4A5-201ENST00000328300 FHAD1B1AJZ9 1412 aa15.76■□□□□ 0.11
COL4A5-201ENST00000328300 CCDC88BA6NC98 1476 aa15.74■□□□□ 0.11
COL4A5-201ENST00000328300 CNGB1Q14028 1251 aaPredicted RBP15.72■□□□□ 0.11
COL4A5-201ENST00000328300 BCANQ96GW7 911 aa15.72■□□□□ 0.11
COL4A5-201ENST00000328300 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
COL4A5-201ENST00000328300 STAG3Q9UJ98 1225 aa15.69■□□□□ 0.1
COL4A5-201ENST00000328300 CUX2O14529 1486 aa15.68■□□□□ 0.1
COL4A5-201ENST00000328300 CARMIL1Q5VZK9 1371 aa15.68■□□□□ 0.1
COL4A5-201ENST00000328300 RTL5Q5HYW3 569 aaPredicted RBP15.66■□□□□ 0.1
COL4A5-201ENST00000328300 SMARCA4P51532 1647 aa15.64■□□□□ 0.09
COL4A5-201ENST00000328300 ZBTB47Q9UFB7 747 aaPredicted RBP15.63■□□□□ 0.09
COL4A5-201ENST00000328300 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
COL4A5-201ENST00000328300 ATAD2BQ9ULI0 1458 aa15.62■□□□□ 0.09
COL4A5-201ENST00000328300 ABCC8Q09428 1581 aa15.61■□□□□ 0.09
COL4A5-201ENST00000328300 CHIC2Q9UKJ5 165 aa15.58■□□□□ 0.09
COL4A5-201ENST00000328300 CARMIL2Q6F5E8 1435 aa15.58■□□□□ 0.08
COL4A5-201ENST00000328300 CHGAP10645 457 aaKnown RBP15.57■□□□□ 0.08
COL4A5-201ENST00000328300 CFDP1Q9UEE9 299 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms