RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 NISCHQ9Y2I1 1504 aa39.28■■■■□ 3.88
TSPAN4-208ENST00000409531 CCDC180Q9P1Z9 1646 aa34.86■■■■□ 3.17
TSPAN4-208ENST00000409531 ABCC9O60706 1549 aa34.27■■■■□ 3.08
TSPAN4-208ENST00000409531 DCAF8L2P0C7V8 631 aa32.99■■■□□ 2.87
TSPAN4-208ENST00000409531 RB1CC1Q8TDY2 1594 aa32.9■■■□□ 2.86
TSPAN4-208ENST00000409531 NACADO15069 1562 aa32.87■■■□□ 2.85
TSPAN4-208ENST00000409531 ZCCHC6Q5VYS8 1495 aaKnown RBP32.67■■■□□ 2.82
TSPAN4-208ENST00000409531 MYO15BQ96JP2 1530 aa32.66■■■□□ 2.82
TSPAN4-208ENST00000409531 DCAF1Q9Y4B6 1507 aa32.49■■■□□ 2.79
TSPAN4-208ENST00000409531 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.78
TSPAN4-208ENST00000409531 PABPN1Q86U42 306 aaKnown RBP eCLIP32.09■■■□□ 2.735e-10■■■□□ 17.3
TSPAN4-208ENST00000409531 UNC13AQ9UPW8 1703 aa32.06■■■□□ 2.72
TSPAN4-208ENST00000409531 BICRAQ9NZM4 1560 aa31.9■■■□□ 2.7
TSPAN4-208ENST00000409531 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
TSPAN4-208ENST00000409531 SHROOM4Q9ULL8 1493 aa31.57■■■□□ 2.64
TSPAN4-208ENST00000409531 EIF4G1Q04637 1599 aaKnown RBP31.07■■■□□ 2.56
TSPAN4-208ENST00000409531 CC2D2AQ9P2K1 1620 aa30.96■■■□□ 2.55
TSPAN4-208ENST00000409531 CECR2Q9BXF3 1484 aa30.8■■■□□ 2.52
TSPAN4-208ENST00000409531 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
TSPAN4-208ENST00000409531 BAZ1AQ9NRL2 1556 aaPredicted RBP30.43■■■□□ 2.46
TSPAN4-208ENST00000409531 NCAPD3P42695 1498 aa30.39■■■□□ 2.45
TSPAN4-208ENST00000409531 ATAD2BQ9ULI0 1458 aa30.36■■■□□ 2.45
TSPAN4-208ENST00000409531 SMARCA2P51531 1590 aa30.29■■■□□ 2.44
TSPAN4-208ENST00000409531 MROH2BQ7Z745 1585 aa30.26■■■□□ 2.44
TSPAN4-208ENST00000409531 PEG3Q9GZU2 1588 aa30.16■■■□□ 2.42
TSPAN4-208ENST00000409531 DNAJC5Q9H3Z4 198 aa30.15■■■□□ 2.42
TSPAN4-208ENST00000409531 HMGXB3Q12766 1538 aa30.14■■■□□ 2.42
TSPAN4-208ENST00000409531 BAZ1BQ9UIG0 1483 aaKnown RBP30.09■■■□□ 2.41
TSPAN4-208ENST00000409531 RSF1Q96T23 1441 aaPredicted RBP29.94■■■□□ 2.38
TSPAN4-208ENST00000409531 WIZO95785 1651 aa29.9■■■□□ 2.38
TSPAN4-208ENST00000409531 NESP48681 1621 aa29.63■■■□□ 2.33
TSPAN4-208ENST00000409531 TOP2AP11388 1531 aaKnown RBP29.58■■■□□ 2.33
TSPAN4-208ENST00000409531 ERCC6Q03468 1493 aa29.55■■■□□ 2.32
TSPAN4-208ENST00000409531 LAMC3Q9Y6N6 1575 aa29.53■■■□□ 2.32
TSPAN4-208ENST00000409531 SUPT5HO00267 1087 aaKnown RBP29.51■■■□□ 2.32
TSPAN4-208ENST00000409531 CADPSQ9ULU8 1353 aa29.51■■■□□ 2.31
TSPAN4-208ENST00000409531 CUX2O14529 1486 aa29.4■■■□□ 2.3
TSPAN4-208ENST00000409531 PDS5BQ9NTI5 1447 aa29.4■■■□□ 2.3
TSPAN4-208ENST00000409531 CCDC88BA6NC98 1476 aa29.3■■■□□ 2.28
TSPAN4-208ENST00000409531 CFTRP13569 1480 aa29.29■■■□□ 2.28
TSPAN4-208ENST00000409531 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
TSPAN4-208ENST00000409531 FANCD2Q9BXW9 1451 aa29.12■■■□□ 2.25
TSPAN4-208ENST00000409531 THOC2Q8NI27 1593 aaKnown RBP29.11■■■□□ 2.25
TSPAN4-208ENST00000409531 CEP164Q9UPV0 1460 aa29.07■■■□□ 2.24
TSPAN4-208ENST00000409531 MRC2Q9UBG0 1479 aa29.05■■■□□ 2.24
TSPAN4-208ENST00000409531 WDR62O43379 1518 aa28.92■■■□□ 2.22
TSPAN4-208ENST00000409531 PRDM2Q13029 1718 aa28.9■■■□□ 2.22
TSPAN4-208ENST00000409531 URB2Q14146 1524 aaKnown RBP28.81■■■□□ 2.2
TSPAN4-208ENST00000409531 TRIM41Q8WV44 630 aa28.68■■■□□ 2.18
TSPAN4-208ENST00000409531 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
TSPAN4-208ENST00000409531 TOPBP1Q92547 1522 aa28.63■■■□□ 2.17
TSPAN4-208ENST00000409531 DNMBPQ6XZF7 1577 aa28.57■■■□□ 2.16
TSPAN4-208ENST00000409531 IFT140Q96RY7 1462 aa28.49■■■□□ 2.15
TSPAN4-208ENST00000409531 POLA1P09884 1462 aaPredicted RBP28.39■■■□□ 2.14
TSPAN4-208ENST00000409531 CUX1P39880 1505 aa28.38■■■□□ 2.13
TSPAN4-208ENST00000409531 ZNF608Q9ULD9 1512 aaPredicted RBP28.35■■■□□ 2.13
TSPAN4-208ENST00000409531 SOGA1O94964 1423 aa28.34■■■□□ 2.13
TSPAN4-208ENST00000409531 FGD5Q6ZNL6 1462 aa28.31■■■□□ 2.12
TSPAN4-208ENST00000409531 TARBP1Q13395 1621 aaKnown RBP28.3■■■□□ 2.12
TSPAN4-208ENST00000409531 RAD54L2Q9Y4B4 1467 aa28.29■■■□□ 2.12
TSPAN4-208ENST00000409531 WRNQ14191 1432 aaPredicted RBP eCLIP28.22■■■□□ 2.11
TSPAN4-208ENST00000409531 AQRO60306 1485 aaKnown RBP eCLIP28.22■■■□□ 2.114e-8■■■■■ 31.9
TSPAN4-208ENST00000409531 TDRD9Q8NDG6 1382 aaKnown RBP28.19■■■□□ 2.1
TSPAN4-208ENST00000409531 EIF4G3O43432 1585 aaKnown RBP28.17■■■□□ 2.1
TSPAN4-208ENST00000409531 OSCARQ8IYS5 282 aa28.15■■■□□ 2.1
TSPAN4-208ENST00000409531 TOP2BQ02880 1626 aa28.11■■■□□ 2.09
TSPAN4-208ENST00000409531 SYNJ1O43426 1573 aa28.07■■■□□ 2.08
TSPAN4-208ENST00000409531 BIVM-ERCC5R4GMW8 1640 aa28.07■■■□□ 2.08
TSPAN4-208ENST00000409531 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
TSPAN4-208ENST00000409531 ABCA10Q8WWZ4 1543 aa28.05■■■□□ 2.08
TSPAN4-208ENST00000409531 GRIN2BQ13224 1484 aa27.97■■■□□ 2.07
TSPAN4-208ENST00000409531 GAPVD1Q14C86 1478 aa27.97■■■□□ 2.07
TSPAN4-208ENST00000409531 FBLN2P98095 1184 aa27.96■■■□□ 2.07
TSPAN4-208ENST00000409531 SNAPC4Q5SXM2 1469 aa27.91■■■□□ 2.06
TSPAN4-208ENST00000409531 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
TSPAN4-208ENST00000409531 MAGI1Q96QZ7 1491 aaPredicted RBP27.89■■■□□ 2.06
TSPAN4-208ENST00000409531 CHMP7Q8WUX9 453 aaPredicted RBP27.88■■■□□ 2.05
TSPAN4-208ENST00000409531 ABCA5Q8WWZ7 1642 aa27.87■■■□□ 2.05
TSPAN4-208ENST00000409531 CHD1O14646 1710 aa27.8■■■□□ 2.04
TSPAN4-208ENST00000409531 SYNJ2O15056 1496 aa27.79■■■□□ 2.04
TSPAN4-208ENST00000409531 PBRM1Q86U86 1689 aa27.79■■■□□ 2.04
TSPAN4-208ENST00000409531 RIMBP3CA6NJZ7 1639 aa27.72■■■□□ 2.03
TSPAN4-208ENST00000409531 RIMBP3BA6NNM3 1639 aa27.72■■■□□ 2.03
TSPAN4-208ENST00000409531 RIMBP3Q9UFD9 1639 aa27.72■■■□□ 2.03
TSPAN4-208ENST00000409531 ERICH3Q5RHP9 1530 aa27.69■■■□□ 2.02
TSPAN4-208ENST00000409531 FHAD1B1AJZ9 1412 aa27.65■■■□□ 2.02
TSPAN4-208ENST00000409531 KIF27Q86VH2 1401 aa27.65■■■□□ 2.02
TSPAN4-208ENST00000409531 ADAMTS12P58397 1594 aa27.61■■■□□ 2.01
TSPAN4-208ENST00000409531 GRIN2AQ12879 1464 aa27.59■■■□□ 2.01
TSPAN4-208ENST00000409531 IGF1RP08069 1367 aa27.59■■■□□ 2.01
TSPAN4-208ENST00000409531 ARHGEF11O15085 1522 aa27.55■■■□□ 2
TSPAN4-208ENST00000409531 CLASP1Q7Z460 1538 aa27.55■■■□□ 2
TSPAN4-208ENST00000409531 NUP160Q12769 1436 aa27.48■■□□□ 1.99
TSPAN4-208ENST00000409531 CYB5RLQ6IPT4 315 aa27.45■■□□□ 1.99
TSPAN4-208ENST00000409531 EEA1Q15075 1411 aa27.42■■□□□ 1.98
TSPAN4-208ENST00000409531 CEP170Q5SW79 1584 aa27.42■■□□□ 1.98
TSPAN4-208ENST00000409531 CARMIL1Q5VZK9 1371 aa27.41■■□□□ 1.98
TSPAN4-208ENST00000409531 CUL7Q14999 1698 aa27.38■■□□□ 1.97
TSPAN4-208ENST00000409531 RUSC2Q8N2Y8 1516 aa27.37■■□□□ 1.97
TSPAN4-208ENST00000409531 TRHP20396 242 aaPredicted RBP27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms