RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
HDAC4-208ENST00000463007 CCDC180Q9P1Z9 1646 aa22.74■■□□□ 1.23
HDAC4-208ENST00000463007 ZCCHC6Q5VYS8 1495 aaKnown RBP22.31■■□□□ 1.16
HDAC4-208ENST00000463007 DCAF1Q9Y4B6 1507 aa21.83■■□□□ 1.09
HDAC4-208ENST00000463007 SHROOM4Q9ULL8 1493 aa21.79■■□□□ 1.08
HDAC4-208ENST00000463007 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
HDAC4-208ENST00000463007 MYO15BQ96JP2 1530 aa21.34■■□□□ 1.01
HDAC4-208ENST00000463007 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
HDAC4-208ENST00000463007 ABCC9O60706 1549 aa21.03■□□□□ 0.96
HDAC4-208ENST00000463007 NACADO15069 1562 aa20.95■□□□□ 0.94
HDAC4-208ENST00000463007 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
HDAC4-208ENST00000463007 PCGF6Q9BYE7 350 aa20.75■□□□□ 0.91
HDAC4-208ENST00000463007 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
HDAC4-208ENST00000463007 RSF1Q96T23 1441 aaPredicted RBP20.68■□□□□ 0.9
HDAC4-208ENST00000463007 PPARGC1BQ86YN6 1023 aaKnown RBP20.63■□□□□ 0.89
HDAC4-208ENST00000463007 HRCP23327 699 aa20.61■□□□□ 0.89
HDAC4-208ENST00000463007 RB1CC1Q8TDY2 1594 aa20.6■□□□□ 0.89
HDAC4-208ENST00000463007 CECR2Q9BXF3 1484 aa20.46■□□□□ 0.87
HDAC4-208ENST00000463007 UNC13AQ9UPW8 1703 aa20.44■□□□□ 0.86
HDAC4-208ENST00000463007 MROH2BQ7Z745 1585 aa20.42■□□□□ 0.86
HDAC4-208ENST00000463007 LOC105371045A0A1W2PR82 267 aa20.36■□□□□ 0.85
HDAC4-208ENST00000463007 WIZO95785 1651 aa20.3■□□□□ 0.84
HDAC4-208ENST00000463007 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-208ENST00000463007 EIF4G1Q04637 1599 aaKnown RBP20.18■□□□□ 0.82
HDAC4-208ENST00000463007 EHMT2Q96KQ7 1210 aa20.16■□□□□ 0.82
HDAC4-208ENST00000463007 SMARCA4P51532 1647 aa20.16■□□□□ 0.82
HDAC4-208ENST00000463007 BICRAQ9NZM4 1560 aa20.15■□□□□ 0.82
HDAC4-208ENST00000463007 TOP2AP11388 1531 aaKnown RBP20.06■□□□□ 0.8
HDAC4-208ENST00000463007 FAM9AQ8IZU1 332 aaPredicted RBP19.95■□□□□ 0.78
HDAC4-208ENST00000463007 PEG3Q9GZU2 1588 aa19.94■□□□□ 0.78
HDAC4-208ENST00000463007 SMARCA2P51531 1590 aa19.94■□□□□ 0.78
HDAC4-208ENST00000463007 CCDC88BA6NC98 1476 aa19.86■□□□□ 0.77
HDAC4-208ENST00000463007 TRIM41Q8WV44 630 aa19.85■□□□□ 0.77
HDAC4-208ENST00000463007 TRIM26Q12899 539 aaPredicted RBP19.83■□□□□ 0.76
HDAC4-208ENST00000463007 PABPN1Q86U42 306 aaKnown RBP eCLIP19.71■□□□□ 0.75
HDAC4-208ENST00000463007 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
HDAC4-208ENST00000463007 ATAD2BQ9ULI0 1458 aa19.63■□□□□ 0.73
HDAC4-208ENST00000463007 TTBK1Q5TCY1 1321 aaPredicted RBP19.53■□□□□ 0.72
HDAC4-208ENST00000463007 BAZ1BQ9UIG0 1483 aaKnown RBP19.48■□□□□ 0.71
HDAC4-208ENST00000463007 SCAF1Q9H7N4 1312 aaKnown RBP19.45■□□□□ 0.7
HDAC4-208ENST00000463007 HMGXB3Q12766 1538 aa19.41■□□□□ 0.7
HDAC4-208ENST00000463007 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
HDAC4-208ENST00000463007 ZEB1P37275 1124 aaPredicted RBP19.39■□□□□ 0.69
HDAC4-208ENST00000463007 SOGA1O94964 1423 aa19.38■□□□□ 0.69
HDAC4-208ENST00000463007 EEA1Q15075 1411 aa19.37■□□□□ 0.69
HDAC4-208ENST00000463007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.37■□□□□ 0.69
HDAC4-208ENST00000463007 WRNQ14191 1432 aaPredicted RBP eCLIP19.36■□□□□ 0.69
HDAC4-208ENST00000463007 NCAPD3P42695 1498 aa19.35■□□□□ 0.69
HDAC4-208ENST00000463007 RUSC2Q8N2Y8 1516 aa19.33■□□□□ 0.68
HDAC4-208ENST00000463007 CCER1Q8TC90 406 aaPredicted RBP19.26■□□□□ 0.67
HDAC4-208ENST00000463007 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
HDAC4-208ENST00000463007 TOP2BQ02880 1626 aa19.25■□□□□ 0.67
HDAC4-208ENST00000463007 KIF21BO75037 1637 aa19.23■□□□□ 0.67
HDAC4-208ENST00000463007 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
HDAC4-208ENST00000463007 CEP162Q5TB80 1403 aa19.19■□□□□ 0.66
HDAC4-208ENST00000463007 CSRNP3Q8WYN3 585 aa19.16■□□□□ 0.66
HDAC4-208ENST00000463007 GOLGA3Q08378 1498 aa19.16■□□□□ 0.66
HDAC4-208ENST00000463007 PRDM2Q13029 1718 aa19.15■□□□□ 0.66
HDAC4-208ENST00000463007 PELP1Q8IZL8 1130 aaKnown RBP19.12■□□□□ 0.65
HDAC4-208ENST00000463007 CFTRP13569 1480 aa19.11■□□□□ 0.65
HDAC4-208ENST00000463007 NEUROD1Q13562 356 aa19.11■□□□□ 0.65
HDAC4-208ENST00000463007 CEP164Q9UPV0 1460 aa19.1■□□□□ 0.65
HDAC4-208ENST00000463007 CUX1P39880 1505 aa19.05■□□□□ 0.64
HDAC4-208ENST00000463007 YTHDC1Q96MU7 727 aaKnown RBP19.03■□□□□ 0.64
HDAC4-208ENST00000463007 GTF3C3Q9Y5Q9 886 aa19.02■□□□□ 0.64
HDAC4-208ENST00000463007 ACIN1Q9UKV3 1341 aaKnown RBP19■□□□□ 0.63
HDAC4-208ENST00000463007 DIEXFQ68CQ4 756 aaKnown RBP18.99■□□□□ 0.63
HDAC4-208ENST00000463007 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
HDAC4-208ENST00000463007 ERICH3Q5RHP9 1530 aa18.96■□□□□ 0.63
HDAC4-208ENST00000463007 CC2D2AQ9P2K1 1620 aa18.95■□□□□ 0.62
HDAC4-208ENST00000463007 PRXQ9BXM0 1461 aa18.94■□□□□ 0.62
HDAC4-208ENST00000463007 UBTFP17480 764 aaKnown RBP18.86■□□□□ 0.61
HDAC4-208ENST00000463007 CENPBP07199 599 aaPredicted RBP18.85■□□□□ 0.61
HDAC4-208ENST00000463007 CLIP1P30622 1438 aa18.85■□□□□ 0.61
HDAC4-208ENST00000463007 CADPSQ9ULU8 1353 aa18.83■□□□□ 0.61
HDAC4-208ENST00000463007 VPS8Q8N3P4 1428 aa18.82■□□□□ 0.6
HDAC4-208ENST00000463007 RANGAP1P46060 587 aaPredicted RBP18.81■□□□□ 0.6
HDAC4-208ENST00000463007 KIF27Q86VH2 1401 aa18.77■□□□□ 0.59
HDAC4-208ENST00000463007 HNRNPUL2Q1KMD3 747 aaKnown RBP18.75■□□□□ 0.59
HDAC4-208ENST00000463007 ARAP1Q96P48 1450 aa18.73■□□□□ 0.59
HDAC4-208ENST00000463007 FGD5Q6ZNL6 1462 aa18.68■□□□□ 0.58
HDAC4-208ENST00000463007 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
HDAC4-208ENST00000463007 DNMBPQ6XZF7 1577 aa18.64■□□□□ 0.58
HDAC4-208ENST00000463007 IGF1RP08069 1367 aa18.62■□□□□ 0.57
HDAC4-208ENST00000463007 CUX2O14529 1486 aa18.61■□□□□ 0.57
HDAC4-208ENST00000463007 ZNF316A6NFI3 1004 aaPredicted RBP18.59■□□□□ 0.57
HDAC4-208ENST00000463007 LAMC3Q9Y6N6 1575 aa18.59■□□□□ 0.57
HDAC4-208ENST00000463007 ARHGAP35Q9NRY4 1499 aa18.59■□□□□ 0.57
HDAC4-208ENST00000463007 MIER1Q8N108 512 aa18.58■□□□□ 0.57
HDAC4-208ENST00000463007 WDR97A6NE52 1622 aa18.58■□□□□ 0.56
HDAC4-208ENST00000463007 NESP48681 1621 aa18.56■□□□□ 0.56
HDAC4-208ENST00000463007 TOPBP1Q92547 1522 aa18.56■□□□□ 0.56
HDAC4-208ENST00000463007 ABCA10Q8WWZ4 1543 aa18.56■□□□□ 0.56
HDAC4-208ENST00000463007 POLA1P09884 1462 aaPredicted RBP18.53■□□□□ 0.56
HDAC4-208ENST00000463007 URB2Q14146 1524 aaKnown RBP18.47■□□□□ 0.55
HDAC4-208ENST00000463007 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
HDAC4-208ENST00000463007 CUL7Q14999 1698 aa18.46■□□□□ 0.55
HDAC4-208ENST00000463007 RAD54L2Q9Y4B4 1467 aa18.45■□□□□ 0.54
HDAC4-208ENST00000463007 MAP3K1Q13233 1512 aa18.44■□□□□ 0.54
HDAC4-208ENST00000463007 ABCA5Q8WWZ7 1642 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms