Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 RBM39-212ENST00000429968 2149 ntTSL 210.73□□□□□ -0.693e-28■■■□□ 14.6
SRSF1Q07955 RBM39-216ENST00000444878 2124 ntTSL 210.66□□□□□ -0.73e-28■■■□□ 14.6
SRSF1Q07955 RBM39-245ENST00000639702 5914 ntTSL 510.15□□□□□ -0.783e-28■■■□□ 14.6
SRSF1Q07955 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC9.47□□□□□ -0.893e-28■■■□□ 14.6
SRSF1Q07955 RBM39-223ENST00000463004 4580 ntTSL 59.27□□□□□ -0.933e-28■■■□□ 14.6
SRSF1Q07955 RBM39-202ENST00000338163 2792 ntTSL 29.14□□□□□ -0.953e-28■■■□□ 14.6
SRSF1Q07955 RBM39-206ENST00000403542 2883 ntTSL 29.1□□□□□ -0.953e-28■■■□□ 14.6
SRSF1Q07955 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.892e-54■■■□□ 14.6
SRSF1Q07955 SUPT5H-208ENST00000595368 659 ntTSL 215.04■□□□□ -02e-8■■■□□ 14.6
SRSF1Q07955 SUPT5H-220ENST00000601978 538 ntTSL 213.51□□□□□ -0.252e-8■■■□□ 14.6
SRSF1Q07955 SUPT5H-219ENST00000601515 396 ntTSL 213.51□□□□□ -0.252e-8■■■□□ 14.6
SRSF1Q07955 SUPT5H-206ENST00000594729 364 ntTSL 511.91□□□□□ -0.52e-8■■■□□ 14.6
SRSF1Q07955 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.073e-6■■■□□ 14.6
SRSF1Q07955 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.32e-8■■■□□ 14.6
SRSF1Q07955 HNRNPM-214ENST00000600806 2373 ntTSL 514.89□□□□□ -0.032e-8■■■□□ 14.6
SRSF1Q07955 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.052e-8■■■□□ 14.6
SRSF1Q07955 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.22e-8■■■□□ 14.6
SRSF1Q07955 DDIT3-203ENST00000547526 644 ntTSL 311.5□□□□□ -0.576e-7■■■□□ 14.6
SRSF1Q07955 DDIT3-201ENST00000346473 906 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.696e-7■■■□□ 14.6
SRSF1Q07955 DDIT3-202ENST00000547303 872 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.746e-7■■■□□ 14.6
SRSF1Q07955 DDIT3-205ENST00000552740 951 ntTSL 1 (best) BASIC8.38□□□□□ -1.076e-7■■■□□ 14.6
SRSF1Q07955 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC8.06□□□□□ -1.126e-7■■■□□ 14.6
SRSF1Q07955 DDIT3-206ENST00000623876 1151 nt5.23□□□□□ -1.576e-7■■■□□ 14.6
SRSF1Q07955 PNCK-216ENST00000458354 498 ntTSL 327.28■■□□□ 1.964e-8■■■□□ 14.6
SRSF1Q07955 PNCK-223ENST00000466662 464 ntTSL 316.76■□□□□ 0.274e-8■■■□□ 14.6
SRSF1Q07955 PNCK-206ENST00000418241 566 ntTSL 316.36■□□□□ 0.214e-8■■■□□ 14.6
SRSF1Q07955 PNCK-212ENST00000434652 311 ntTSL 516.36■□□□□ 0.214e-8■■■□□ 14.6
SRSF1Q07955 MIR4751-201ENST00000578027 74 ntBASIC15.8■□□□□ 0.124e-8■■■□□ 14.6
SRSF1Q07955 WARS-243ENST00000557722 848 ntTSL 514.74□□□□□ -0.057e-13■■■□□ 14.6
SRSF1Q07955 GOLGA4-204ENST00000429018 2036 ntTSL 1 (best)13.59□□□□□ -0.235e-8■■■□□ 14.6
SRSF1Q07955 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.15□□□□□ -0.467e-13■■■□□ 14.6
SRSF1Q07955 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.71□□□□□ -0.537e-13■■■□□ 14.6
SRSF1Q07955 WARS-230ENST00000556504 847 ntTSL 59.4□□□□□ -0.97e-13■■■□□ 14.6
SRSF1Q07955 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.997e-13■■■□□ 14.6
SRSF1Q07955 WARS-220ENST00000554950 1376 ntTSL 28.65□□□□□ -1.027e-13■■■□□ 14.6
SRSF1Q07955 WARS-201ENST00000344102 2690 ntTSL 5 BASIC8.53□□□□□ -1.047e-13■■■□□ 14.6
SRSF1Q07955 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.127e-13■■■□□ 14.6
SRSF1Q07955 USP48-207ENST00000471752 445 ntTSL 37.9□□□□□ -1.144e-8■■■□□ 14.6
SRSF1Q07955 USP48-203ENST00000374732 3037 ntTSL 2 BASIC7.28□□□□□ -1.244e-8■■■□□ 14.6
SRSF1Q07955 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.327e-13■■■□□ 14.6
SRSF1Q07955 WARS-213ENST00000554084 866 ntTSL 55.73□□□□□ -1.497e-13■■■□□ 14.6
SRSF1Q07955 WARS-205ENST00000553395 801 ntTSL 55.25□□□□□ -1.577e-13■■■□□ 14.6
SRSF1Q07955 RTN4-215ENST00000491592 860 ntTSL 24.34□□□□□ -1.714e-8■■■□□ 14.6
SRSF1Q07955 RTN4-213ENST00000485749 832 ntTSL 24.06□□□□□ -1.764e-8■■■□□ 14.6
SRSF1Q07955 USP9X-208ENST00000487625 581 ntTSL 23.17□□□□□ -1.94e-8■■■□□ 14.6
SRSF1Q07955 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.558e-10■■■□□ 14.6
SRSF1Q07955 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.698e-10■■■□□ 14.6
SRSF1Q07955 TOP3B-213ENST00000457179 3061 ntTSL 510.47□□□□□ -0.738e-10■■■□□ 14.6
SRSF1Q07955 TOP3B-210ENST00000444502 4163 ntTSL 28.09□□□□□ -1.118e-10■■■□□ 14.6
SRSF1Q07955 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.522e-7■■■□□ 14.6
SRSF1Q07955 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.532e-7■■■□□ 14.6
SRSF1Q07955 SUGP2-213ENST00000600239 5565 ntTSL 211.54□□□□□ -0.562e-7■■■□□ 14.6
SRSF1Q07955 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.25□□□□□ -1.579e-8■■■□□ 14.6
SRSF1Q07955 AUP1-207ENST00000472800 663 ntTSL 418.03■□□□□ 0.482e-21■■■□□ 14.6
SRSF1Q07955 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-21■■■□□ 14.6
SRSF1Q07955 AUP1-204ENST00000463900 1645 ntTSL 1 (best)15.68■□□□□ 0.12e-21■■■□□ 14.6
SRSF1Q07955 AUP1-202ENST00000425118 1581 ntTSL 1 (best)15.51■□□□□ 0.072e-21■■■□□ 14.6
SRSF1Q07955 AUP1-206ENST00000466894 1658 ntTSL 514.76□□□□□ -0.052e-21■■■□□ 14.6
SRSF1Q07955 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.31■□□□□ 0.529e-7■■■□□ 14.6
SRSF1Q07955 ALDH16A1-204ENST00000593417 2343 ntTSL 217.13■□□□□ 0.339e-7■■■□□ 14.6
SRSF1Q07955 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.41■□□□□ 0.229e-7■■■□□ 14.6
SRSF1Q07955 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.329e-7■■■□□ 14.6
SRSF1Q07955 ALDH16A1-207ENST00000599652 3995 ntTSL 211.33□□□□□ -0.69e-7■■■□□ 14.6
SRSF1Q07955 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.129e-8■■■□□ 14.6
SRSF1Q07955 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.61■□□□□ 0.099e-8■■■□□ 14.6
SRSF1Q07955 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.6■□□□□ 0.099e-8■■■□□ 14.6
SRSF1Q07955 GOLGA2-208ENST00000486411 591 ntTSL 317.91■□□□□ 0.468e-7■■■□□ 14.6
SRSF1Q07955 LSS-206ENST00000464357 1041 ntTSL 519.24■□□□□ 0.673e-12■■□□□ 14.5
SRSF1Q07955 LSS-204ENST00000450351 853 ntTSL 516.3■□□□□ 0.23e-12■■□□□ 14.5
SRSF1Q07955 LSS-207ENST00000472272 581 ntTSL 215.33■□□□□ 0.043e-12■■□□□ 14.5
SRSF1Q07955 ANKRD11-211ENST00000566973 442 ntTSL 220.54■□□□□ 0.881e-14■■□□□ 14.5
SRSF1Q07955 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.731e-14■■□□□ 14.5
SRSF1Q07955 ANKRD11-204ENST00000378332 1982 ntTSL 217.29■□□□□ 0.361e-14■■□□□ 14.5
SRSF1Q07955 ANKRD11-207ENST00000562816 573 ntTSL 411.57□□□□□ -0.561e-14■■□□□ 14.5
SRSF1Q07955 ANKRD11-215ENST00000568512 294 ntTSL 27.44□□□□□ -1.221e-14■■□□□ 14.5
SRSF1Q07955 GOLGA2-202ENST00000450617 1439 ntTSL 513.22□□□□□ -0.292e-7■■□□□ 14.5
SRSF1Q07955 AL390728.4-202ENST00000606173 430 ntTSL 3 BASIC11.2□□□□□ -0.623e-13■■□□□ 14.5
SRSF1Q07955 MAD1L1-217ENST00000469871 477 ntTSL 36.75□□□□□ -1.337e-7■■□□□ 14.5
SRSF1Q07955 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC11.99□□□□□ -0.492e-6■■□□□ 14.5
SRSF1Q07955 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC11.37□□□□□ -0.592e-6■■□□□ 14.5
SRSF1Q07955 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC9.94□□□□□ -0.822e-6■■□□□ 14.5
SRSF1Q07955 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.852e-6■■□□□ 14.5
SRSF1Q07955 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.912e-6■■□□□ 14.5
SRSF1Q07955 LDLR-208ENST00000558518 3617 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.012e-6■■□□□ 14.5
SRSF1Q07955 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.05■□□□□ 0.641e-9■■□□□ 14.5
SRSF1Q07955 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.4□□□□□ -0.261e-9■■□□□ 14.5
SRSF1Q07955 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.25□□□□□ -0.293e-8■■□□□ 14.5
SRSF1Q07955 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC10.06□□□□□ -0.83e-8■■□□□ 14.5
SRSF1Q07955 IRF3-220ENST00000598108 1118 ntTSL 321.18■□□□□ 0.987e-7■■□□□ 14.5
SRSF1Q07955 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.02■□□□□ 0.797e-7■■□□□ 14.5
SRSF1Q07955 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.73■□□□□ 0.757e-7■■□□□ 14.5
SRSF1Q07955 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.18■□□□□ 0.667e-7■■□□□ 14.5
SRSF1Q07955 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.13■□□□□ 0.657e-7■■□□□ 14.5
SRSF1Q07955 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.617e-7■■□□□ 14.5
SRSF1Q07955 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.13■□□□□ 0.497e-7■■□□□ 14.5
SRSF1Q07955 IRF3-209ENST00000595034 739 ntTSL 317.69■□□□□ 0.427e-7■■□□□ 14.5
SRSF1Q07955 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.91■□□□□ 0.37e-7■■□□□ 14.5
SRSF1Q07955 IRF3-205ENST00000593337 633 ntTSL 316.65■□□□□ 0.267e-7■■□□□ 14.5
SRSF1Q07955 IRF3-216ENST00000597180 301 ntTSL 516.55■□□□□ 0.247e-7■■□□□ 14.5
SRSF1Q07955 IRF3-230ENST00000601809 768 ntTSL 216.39■□□□□ 0.217e-7■■□□□ 14.5
Retrieved 100 of 14,836 protein–RNA pairs in 89.4 ms