RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 SLC24A1O60721 1099 aa15.36■□□□□ 0.05
USP48-203ENST00000374732 NISCHQ9Y2I1 1504 aa14.95□□□□□ -0.02
USP48-203ENST00000374732 MYT1Q01538 1121 aa14.57□□□□□ -0.08
USP48-203ENST00000374732 PELP1Q8IZL8 1130 aaKnown RBP14.51□□□□□ -0.09
USP48-203ENST00000374732 PRKCSHP14314 528 aaPredicted RBP14.43□□□□□ -0.1
USP48-203ENST00000374732 TTBK1Q5TCY1 1321 aaPredicted RBP14.29□□□□□ -0.12
USP48-203ENST00000374732 DAXXQ9UER7 740 aaPredicted RBP14.19□□□□□ -0.14
USP48-203ENST00000374732 APLP2Q06481 763 aa14.11□□□□□ -0.15
USP48-203ENST00000374732 ERICH6Q7L0X2 663 aa14.04□□□□□ -0.16
USP48-203ENST00000374732 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
USP48-203ENST00000374732 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
USP48-203ENST00000374732 PLPPR3Q6T4P5 718 aa13.7□□□□□ -0.22
USP48-203ENST00000374732 RTN4Q9NQC3 1192 aaKnown RBP13.54□□□□□ -0.24
USP48-203ENST00000374732 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
USP48-203ENST00000374732 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
USP48-203ENST00000374732 BCL11AQ9H165 835 aa13.3□□□□□ -0.28
USP48-203ENST00000374732 PLEKHG5O94827 1062 aa13.22□□□□□ -0.29
USP48-203ENST00000374732 MYO15BQ96JP2 1530 aa13.2□□□□□ -0.3
USP48-203ENST00000374732 TIMELESSQ9UNS1 1208 aa13.18□□□□□ -0.3
USP48-203ENST00000374732 ABCC9O60706 1549 aa13.12□□□□□ -0.31
USP48-203ENST00000374732 KLHL34Q8N239 644 aa13.1□□□□□ -0.31
USP48-203ENST00000374732 SHROOM4Q9ULL8 1493 aa13.09□□□□□ -0.31
USP48-203ENST00000374732 ARXQ96QS3 562 aa13.08□□□□□ -0.32
USP48-203ENST00000374732 NACADO15069 1562 aa13.08□□□□□ -0.32
USP48-203ENST00000374732 RB1CC1Q8TDY2 1594 aa13.08□□□□□ -0.32
USP48-203ENST00000374732 FAM9AQ8IZU1 332 aaPredicted RBP13.08□□□□□ -0.32
USP48-203ENST00000374732 RANGAP1P46060 587 aaPredicted RBP13.01□□□□□ -0.33
USP48-203ENST00000374732 TULP1O00294 542 aaPredicted RBP12.94□□□□□ -0.34
USP48-203ENST00000374732 DCAF1Q9Y4B6 1507 aa12.86□□□□□ -0.35
USP48-203ENST00000374732 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
USP48-203ENST00000374732 PODXL2Q9NZ53 605 aa12.78□□□□□ -0.36
USP48-203ENST00000374732 KCNA4P22459 653 aa12.74□□□□□ -0.37
USP48-203ENST00000374732 HOMEZQ8IX15 550 aa12.7□□□□□ -0.38
USP48-203ENST00000374732 AEBP2Q6ZN18 517 aaPredicted RBP12.69□□□□□ -0.38
USP48-203ENST00000374732 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.39
USP48-203ENST00000374732 TAOK2Q9UL54 1235 aa12.61□□□□□ -0.39
USP48-203ENST00000374732 BICRAQ9NZM4 1560 aa12.56□□□□□ -0.4
USP48-203ENST00000374732 TPRNQ4KMQ1 711 aa12.48□□□□□ -0.41
USP48-203ENST00000374732 UBE2Q2Q8WVN8 375 aa12.45□□□□□ -0.42
USP48-203ENST00000374732 PDIA4P13667 645 aaKnown RBP12.44□□□□□ -0.42
USP48-203ENST00000374732 ZCCHC6Q5VYS8 1495 aaKnown RBP12.44□□□□□ -0.42
USP48-203ENST00000374732 NPM2Q86SE8 214 aaKnown RBP12.43□□□□□ -0.42
USP48-203ENST00000374732 CSRNP3Q8WYN3 585 aa12.43□□□□□ -0.42
USP48-203ENST00000374732 CHIC1Q5VXU3 224 aa12.38□□□□□ -0.43
USP48-203ENST00000374732 SCAF1Q9H7N4 1312 aaKnown RBP12.38□□□□□ -0.43
USP48-203ENST00000374732 C14orf37Q86TY3 774 aa12.37□□□□□ -0.43
USP48-203ENST00000374732 PDE4CQ08493 712 aa12.3□□□□□ -0.44
USP48-203ENST00000374732 PKNOX2Q96KN3 472 aa12.3□□□□□ -0.44
USP48-203ENST00000374732 LOC105371045A0A1W2PR82 267 aa12.29□□□□□ -0.44
USP48-203ENST00000374732 HRCP23327 699 aa12.29□□□□□ -0.44
USP48-203ENST00000374732 GTF3C3Q9Y5Q9 886 aa12.28□□□□□ -0.44
USP48-203ENST00000374732 CENPBP07199 599 aaPredicted RBP12.27□□□□□ -0.45
USP48-203ENST00000374732 HAP1P54257 671 aaPredicted RBP12.26□□□□□ -0.45
USP48-203ENST00000374732 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
USP48-203ENST00000374732 ANO8Q9HCE9 1232 aaPredicted RBP12.25□□□□□ -0.45
USP48-203ENST00000374732 BCANQ96GW7 911 aa12.24□□□□□ -0.45
USP48-203ENST00000374732 EIF4G1Q04637 1599 aaKnown RBP12.22□□□□□ -0.45
USP48-203ENST00000374732 CC2D2AQ9P2K1 1620 aa12.21□□□□□ -0.46
USP48-203ENST00000374732 CHMP4AQ9BY43 222 aa12.19□□□□□ -0.46
USP48-203ENST00000374732 DHX37Q8IY37 1157 aaKnown RBP12.19□□□□□ -0.46
USP48-203ENST00000374732 NEFLP07196 543 aa12.14□□□□□ -0.47
USP48-203ENST00000374732 TRIM26Q12899 539 aaPredicted RBP12.13□□□□□ -0.47
USP48-203ENST00000374732 BCL11BQ9C0K0 894 aaPredicted RBP12.11□□□□□ -0.47
USP48-203ENST00000374732 CECR2Q9BXF3 1484 aa12.1□□□□□ -0.47
USP48-203ENST00000374732 CUX2O14529 1486 aa12.08□□□□□ -0.48
USP48-203ENST00000374732 SAMD1Q6SPF0 538 aaPredicted RBP12.04□□□□□ -0.48
USP48-203ENST00000374732 TAF7LQ5H9L4 462 aa12□□□□□ -0.49
USP48-203ENST00000374732 HMGXB3Q12766 1538 aa11.99□□□□□ -0.49
USP48-203ENST00000374732 SUPT5HO00267 1087 aaKnown RBP11.99□□□□□ -0.49
USP48-203ENST00000374732 TMEM132AQ24JP5 1023 aa11.97□□□□□ -0.49
USP48-203ENST00000374732 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
USP48-203ENST00000374732 ANP32EQ9BTT0 268 aa11.96□□□□□ -0.49
USP48-203ENST00000374732 SMARCA2P51531 1590 aa11.96□□□□□ -0.49
USP48-203ENST00000374732 PEG3Q9GZU2 1588 aa11.96□□□□□ -0.5
USP48-203ENST00000374732 FGD1P98174 961 aa11.95□□□□□ -0.5
USP48-203ENST00000374732 PLCB2Q00722 1185 aa11.94□□□□□ -0.5
USP48-203ENST00000374732 NCAPD3P42695 1498 aa11.94□□□□□ -0.5
USP48-203ENST00000374732 SCRIBQ14160 1630 aa11.94□□□□□ -0.5
USP48-203ENST00000374732 BRD2P25440 801 aaKnown RBP11.93□□□□□ -0.5
USP48-203ENST00000374732 CCDC136Q96JN2 1154 aa11.92□□□□□ -0.5
USP48-203ENST00000374732 UBTFP17480 764 aaKnown RBP11.92□□□□□ -0.5
USP48-203ENST00000374732 PABPN1Q86U42 306 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP48-203ENST00000374732 A0A0U1RQG5 324 aaPredicted RBP11.86□□□□□ -0.51
USP48-203ENST00000374732 CDK11BP21127 795 aaKnown RBP11.84□□□□□ -0.51
USP48-203ENST00000374732 CDK11AQ9UQ88 783 aaPredicted RBP11.84□□□□□ -0.51
USP48-203ENST00000374732 DCAF8L2P0C7V8 631 aa11.82□□□□□ -0.52
USP48-203ENST00000374732 CNKSR2Q8WXI2 1034 aa11.81□□□□□ -0.52
USP48-203ENST00000374732 PPP6R1Q9UPN7 881 aa11.81□□□□□ -0.52
USP48-203ENST00000374732 SALL2Q9Y467 1007 aaPredicted RBP11.78□□□□□ -0.52
USP48-203ENST00000374732 DNAJC5Q9H3Z4 198 aa11.77□□□□□ -0.52
USP48-203ENST00000374732 LAMC3Q9Y6N6 1575 aa11.77□□□□□ -0.53
USP48-203ENST00000374732 PAXIP1Q6ZW49 1069 aaPredicted RBP11.77□□□□□ -0.53
USP48-203ENST00000374732 IRX6P78412 446 aaPredicted RBP11.76□□□□□ -0.53
USP48-203ENST00000374732 ZEB1P37275 1124 aaPredicted RBP11.75□□□□□ -0.53
USP48-203ENST00000374732 IGSF3O75054 1194 aa11.75□□□□□ -0.53
USP48-203ENST00000374732 CFAP44Q96MT7 982 aa11.74□□□□□ -0.53
USP48-203ENST00000374732 SMARCA4P51532 1647 aa11.72□□□□□ -0.53
USP48-203ENST00000374732 BAZ1AQ9NRL2 1556 aaPredicted RBP11.71□□□□□ -0.53
USP48-203ENST00000374732 THOC2Q8NI27 1593 aaKnown RBP11.69□□□□□ -0.54
USP48-203ENST00000374732 ATAD2BQ9ULI0 1458 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms