RNA–Protein interactions for RNA: ENST00000444502.5

TOP3B-210, Transcript of DNA topoisomerase III beta, humanhuman

TSL 2

Gene TOP3B, Length 4,163 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-210ENST00000444502 NISCHQ9Y2I1 1504 aa20.23■□□□□ 0.83
TOP3B-210ENST00000444502 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
TOP3B-210ENST00000444502 SHROOM4Q9ULL8 1493 aa18.37■□□□□ 0.53
TOP3B-210ENST00000444502 SUPT5HO00267 1087 aaKnown RBP18.23■□□□□ 0.51
TOP3B-210ENST00000444502 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.39
TOP3B-210ENST00000444502 ABCC9O60706 1549 aa17.2■□□□□ 0.34
TOP3B-210ENST00000444502 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
TOP3B-210ENST00000444502 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
TOP3B-210ENST00000444502 CHIC1Q5VXU3 224 aa16.98■□□□□ 0.31
TOP3B-210ENST00000444502 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
TOP3B-210ENST00000444502 ZCCHC6Q5VYS8 1495 aaKnown RBP16.91■□□□□ 0.3
TOP3B-210ENST00000444502 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.3
TOP3B-210ENST00000444502 RANGAP1P46060 587 aaPredicted RBP16.83■□□□□ 0.28
TOP3B-210ENST00000444502 TRIM41Q8WV44 630 aa16.83■□□□□ 0.28
TOP3B-210ENST00000444502 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
TOP3B-210ENST00000444502 TTBK1Q5TCY1 1321 aaPredicted RBP16.77■□□□□ 0.28
TOP3B-210ENST00000444502 CCDC180Q9P1Z9 1646 aa16.75■□□□□ 0.27
TOP3B-210ENST00000444502 HRCP23327 699 aa16.62■□□□□ 0.25
TOP3B-210ENST00000444502 PPARGC1BQ86YN6 1023 aaKnown RBP16.6■□□□□ 0.25
TOP3B-210ENST00000444502 APLP2Q06481 763 aa16.56■□□□□ 0.24
TOP3B-210ENST00000444502 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
TOP3B-210ENST00000444502 MYT1Q01538 1121 aa16.51■□□□□ 0.23
TOP3B-210ENST00000444502 ATP1B4Q9UN42 357 aaPredicted RBP16.46■□□□□ 0.23
TOP3B-210ENST00000444502 SCRIBQ14160 1630 aa16.42■□□□□ 0.22
TOP3B-210ENST00000444502 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
TOP3B-210ENST00000444502 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
TOP3B-210ENST00000444502 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
TOP3B-210ENST00000444502 RSF1Q96T23 1441 aaPredicted RBP16.15■□□□□ 0.18
TOP3B-210ENST00000444502 CCER1Q8TC90 406 aaPredicted RBP16.14■□□□□ 0.17
TOP3B-210ENST00000444502 ZEB1P37275 1124 aaPredicted RBP16.07■□□□□ 0.16
TOP3B-210ENST00000444502 SCAF1Q9H7N4 1312 aaKnown RBP16.05■□□□□ 0.16
TOP3B-210ENST00000444502 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
TOP3B-210ENST00000444502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
TOP3B-210ENST00000444502 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
TOP3B-210ENST00000444502 ITGAEP38570 1179 aa15.94■□□□□ 0.14
TOP3B-210ENST00000444502 NACADO15069 1562 aa15.93■□□□□ 0.14
TOP3B-210ENST00000444502 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
TOP3B-210ENST00000444502 FBLN2P98095 1184 aa15.88■□□□□ 0.13
TOP3B-210ENST00000444502 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
TOP3B-210ENST00000444502 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
TOP3B-210ENST00000444502 CENPBP07199 599 aaPredicted RBP15.76■□□□□ 0.11
TOP3B-210ENST00000444502 GTF3C3Q9Y5Q9 886 aa15.75■□□□□ 0.11
TOP3B-210ENST00000444502 MYT1LQ9UL68 1186 aa15.72■□□□□ 0.11
TOP3B-210ENST00000444502 P3H3Q8IVL6 736 aa15.71■□□□□ 0.11
TOP3B-210ENST00000444502 ARID3CA6NKF2 412 aa15.68■□□□□ 0.1
TOP3B-210ENST00000444502 BAZ1AQ9NRL2 1556 aaPredicted RBP15.64■□□□□ 0.09
TOP3B-210ENST00000444502 YTHDC1Q96MU7 727 aaKnown RBP15.63■□□□□ 0.09
TOP3B-210ENST00000444502 WIZO95785 1651 aa15.61■□□□□ 0.09
TOP3B-210ENST00000444502 ACIN1Q9UKV3 1341 aaKnown RBP15.6■□□□□ 0.09
TOP3B-210ENST00000444502 NEUROD1Q13562 356 aa15.57■□□□□ 0.08
TOP3B-210ENST00000444502 FAM50AQ14320 339 aaKnown RBP15.54■□□□□ 0.08
TOP3B-210ENST00000444502 CCDC88BA6NC98 1476 aa15.52■□□□□ 0.07
TOP3B-210ENST00000444502 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
TOP3B-210ENST00000444502 SOGA1O94964 1423 aa15.49■□□□□ 0.07
TOP3B-210ENST00000444502 BAZ1BQ9UIG0 1483 aaKnown RBP15.49■□□□□ 0.07
TOP3B-210ENST00000444502 DIEXFQ68CQ4 756 aaKnown RBP15.48■□□□□ 0.07
TOP3B-210ENST00000444502 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.07
TOP3B-210ENST00000444502 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
TOP3B-210ENST00000444502 BCL11AQ9H165 835 aa15.43■□□□□ 0.06
TOP3B-210ENST00000444502 POLR3GLQ9BT43 218 aa15.36■□□□□ 0.05
TOP3B-210ENST00000444502 CNGB1Q14028 1251 aaPredicted RBP15.36■□□□□ 0.05
TOP3B-210ENST00000444502 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
TOP3B-210ENST00000444502 CLIP1P30622 1438 aa15.35■□□□□ 0.05
TOP3B-210ENST00000444502 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
TOP3B-210ENST00000444502 EEA1Q15075 1411 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 GOLGA3Q08378 1498 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 TRIM52Q96A61 297 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
TOP3B-210ENST00000444502 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
TOP3B-210ENST00000444502 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
TOP3B-210ENST00000444502 ZNF316A6NFI3 1004 aaPredicted RBP15.27■□□□□ 0.03
TOP3B-210ENST00000444502 CEP164Q9UPV0 1460 aa15.21■□□□□ 0.03
TOP3B-210ENST00000444502 ATAD2BQ9ULI0 1458 aa15.2■□□□□ 0.02
TOP3B-210ENST00000444502 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
TOP3B-210ENST00000444502 ERCC6Q03468 1493 aa15.18■□□□□ 0.02
TOP3B-210ENST00000444502 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
TOP3B-210ENST00000444502 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
TOP3B-210ENST00000444502 CDK11AQ9UQ88 783 aaPredicted RBP15.11■□□□□ 0.01
TOP3B-210ENST00000444502 CHIC2Q9UKJ5 165 aa15.08■□□□□ 0
TOP3B-210ENST00000444502 PRKCSHP14314 528 aaPredicted RBP15.07■□□□□ 0
TOP3B-210ENST00000444502 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
TOP3B-210ENST00000444502 ERICH6Q7L0X2 663 aa15.05■□□□□ -0
TOP3B-210ENST00000444502 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
TOP3B-210ENST00000444502 KANK4Q5T7N3 995 aaPredicted RBP15.04■□□□□ -0
TOP3B-210ENST00000444502 RAPGEF2Q9Y4G8 1499 aa15.04■□□□□ -0
TOP3B-210ENST00000444502 ANP32EQ9BTT0 268 aa15.03■□□□□ -0
TOP3B-210ENST00000444502 KCNH8Q96L42 1107 aa15.02■□□□□ -0
TOP3B-210ENST00000444502 CUX2O14529 1486 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 PLPPR3Q6T4P5 718 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 TDRD9Q8NDG6 1382 aaKnown RBP15.01□□□□□ -0.01
TOP3B-210ENST00000444502 MIER1Q8N108 512 aa14.99□□□□□ -0.01
TOP3B-210ENST00000444502 MTUS2Q5JR59 1369 aa14.98□□□□□ -0.01
TOP3B-210ENST00000444502 CARMIL1Q5VZK9 1371 aa14.96□□□□□ -0.01
TOP3B-210ENST00000444502 BICRAQ9NZM4 1560 aa14.95□□□□□ -0.02
TOP3B-210ENST00000444502 CADPSQ9ULU8 1353 aa14.95□□□□□ -0.02
TOP3B-210ENST00000444502 BCANQ96GW7 911 aa14.92□□□□□ -0.02
TOP3B-210ENST00000444502 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.024e-7■■■□□ 14.6
TOP3B-210ENST00000444502 PDS5BQ9NTI5 1447 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms