Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC11.94□□□□□ -0.55e-7■■□□□ 14.1
DDX55Q8NHQ9 TNS1-217ENST00000490566 1652 ntTSL 211.43□□□□□ -0.585e-7■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-204ENST00000418865 3082 ntTSL 1 (best)11.2□□□□□ -0.628e-8■■□□□ 14.1
DDX55Q8NHQ9 TMEM9-208ENST00000472411 2892 ntTSL 210.91□□□□□ -0.665e-9■■□□□ 14.1
DDX55Q8NHQ9 AKAP9-211ENST00000487258 3983 ntTSL 210.83□□□□□ -0.688e-8■■□□□ 14.1
DDX55Q8NHQ9 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC10.8□□□□□ -0.685e-7■■□□□ 14.1
DDX55Q8NHQ9 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.548e-8■■□□□ 14.1
DDX55Q8NHQ9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.958e-8■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.04■□□□□ 0.85e-12■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.215e-12■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.37■□□□□ 0.215e-12■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.145e-12■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.135e-12■■□□□ 14.1
DDX55Q8NHQ9 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.89□□□□□ -0.035e-12■■□□□ 14.1
DDX55Q8NHQ9 RPS6-202ENST00000380381 892 ntTSL 2 BASIC11.4□□□□□ -0.583e-34■■□□□ 14.1
DDX55Q8NHQ9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.132e-27■■□□□ 14.1
DDX55Q8NHQ9 RMI2-202ENST00000572173 1865 ntTSL 1 (best) BASIC13.34□□□□□ -0.272e-27■■□□□ 14.1
DDX55Q8NHQ9 SH3GLB2-208ENST00000455407 837 ntTSL 235.31■■■■□ 3.244e-8■■□□□ 14.1
DDX55Q8NHQ9 NSD3-202ENST00000317025 10776 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.351e-6■■□□□ 14.1
DDX55Q8NHQ9 ARF5-204ENST00000463733 1509 ntTSL 521.93■■□□□ 1.15e-10■■□□□ 14.1
DDX55Q8NHQ9 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.435e-10■■□□□ 14.1
DDX55Q8NHQ9 FSCN3-204ENST00000478328 705 ntTSL 1 (best)16.71■□□□□ 0.276e-19■■□□□ 14.1
DDX55Q8NHQ9 PRRC2A-204ENST00000462617 1015 ntTSL 519.95■□□□□ 0.781e-9■■□□□ 14
DDX55Q8NHQ9 PRRC2A-209ENST00000482441 719 ntTSL 214.25□□□□□ -0.131e-9■■□□□ 14
DDX55Q8NHQ9 CD99-201ENST00000381177 756 ntTSL 211.02□□□□□ -0.651e-15■■□□□ 14
DDX55Q8NHQ9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.448e-7■■□□□ 14
DDX55Q8NHQ9 TMED9-206ENST00000513799 772 ntTSL 214.21□□□□□ -0.131e-24■■□□□ 14
DDX55Q8NHQ9 ASIC4-205ENST00000474489 2403 ntTSL 1 (best)17.73■□□□□ 0.439e-7■■□□□ 14
DDX55Q8NHQ9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.279e-7■■□□□ 14
DDX55Q8NHQ9 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.129e-7■■□□□ 14
DDX55Q8NHQ9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.01■■□□□ 1.272e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.592e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.582e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.112e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.97□□□□□ -1.292e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.732e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.78□□□□□ -1.82e-6■■□□□ 14
DDX55Q8NHQ9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.84□□□□□ -1.952e-6■■□□□ 14
DDX55Q8NHQ9 AC135050.2-202ENST00000532364 499 ntTSL 426.73■■□□□ 1.874e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC24.7■■□□□ 1.544e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC24.21■■□□□ 1.474e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.114e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.34■■□□□ 1.014e-18■■□□□ 14
DDX55Q8NHQ9 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.964e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-206ENST00000420057 746 ntTSL 218.13■□□□□ 0.494e-18■■□□□ 14
DDX55Q8NHQ9 AC135050.2-201ENST00000533518 2362 ntTSL 1 (best)17.24■□□□□ 0.354e-18■■□□□ 14
DDX55Q8NHQ9 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC15.48■□□□□ 0.074e-18■■□□□ 14
DDX55Q8NHQ9 REXO1-207ENST00000590936 1271 ntTSL 518.74■□□□□ 0.591e-6■■□□□ 14
DDX55Q8NHQ9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.24■■□□□ 1.631e-8■■□□□ 14
DDX55Q8NHQ9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.271e-8■■□□□ 14
DDX55Q8NHQ9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.32■□□□□ 0.521e-8■■□□□ 14
DDX55Q8NHQ9 PABPC1-216ENST00000520868 971 ntTSL 57.24□□□□□ -1.252e-71■■□□□ 14
DDX55Q8NHQ9 PABPC1-206ENST00000518293 608 ntTSL 34.96□□□□□ -1.622e-71■■□□□ 14
DDX55Q8NHQ9 ISOC2-207ENST00000590921 2283 ntTSL 219.85■□□□□ 0.772e-17■■□□□ 14
DDX55Q8NHQ9 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.551e-42■■□□□ 14
DDX55Q8NHQ9 SELENOP-210ENST00000512980 4175 ntTSL 27.11□□□□□ -1.271e-42■■□□□ 14
DDX55Q8NHQ9 CFB-284ENST00000498317 589 ntTSL 210.63□□□□□ -0.716e-12■■□□□ 14
DDX55Q8NHQ9 SRRT-211ENST00000478693 655 ntTSL 213.62□□□□□ -0.236e-7■■□□□ 14
DDX55Q8NHQ9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.8■■■□□ 2.042e-13■■□□□ 14
DDX55Q8NHQ9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.76■□□□□ 0.912e-13■■□□□ 14
DDX55Q8NHQ9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.732e-13■■□□□ 14
DDX55Q8NHQ9 CTSA-207ENST00000484855 2183 ntTSL 1 (best)18.75■□□□□ 0.592e-13■■□□□ 14
DDX55Q8NHQ9 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.98■□□□□ 0.472e-13■■□□□ 14
DDX55Q8NHQ9 CTSA-214ENST00000606788 3056 ntTSL 217.25■□□□□ 0.352e-13■■□□□ 14
DDX55Q8NHQ9 MT-TY-201ENST00000387409 66 ntBASIC0.45□□□□□ -2.341e-323■■□□□ 14
DDX55Q8NHQ9 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.918e-20■■□□□ 13.9
DDX55Q8NHQ9 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.338e-20■■□□□ 13.9
DDX55Q8NHQ9 TCIRG1-203ENST00000524870 830 ntTSL 1 (best)26.77■■□□□ 1.883e-7■■□□□ 13.9
DDX55Q8NHQ9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.433e-7■■□□□ 13.9
DDX55Q8NHQ9 ACRBP-202ENST00000414226 1700 ntTSL 2 BASIC15.04■□□□□ -03e-7■■□□□ 13.9
DDX55Q8NHQ9 ACRBP-206ENST00000540513 507 ntTSL 1 (best)13.78□□□□□ -0.23e-7■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.622e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-206ENST00000555457 641 ntTSL 318.73■□□□□ 0.592e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-209ENST00000555729 621 ntTSL 318.73■□□□□ 0.592e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-213ENST00000557476 584 ntTSL 318.73■□□□□ 0.592e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-207ENST00000555473 561 ntTSL 214.85□□□□□ -0.032e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-210ENST00000556369 849 ntTSL 514.41□□□□□ -0.12e-12■■□□□ 13.9
DDX55Q8NHQ9 AHSA1-205ENST00000555133 1048 ntTSL 314.01□□□□□ -0.172e-12■■□□□ 13.9
DDX55Q8NHQ9 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.212e-12■■□□□ 13.9
DDX55Q8NHQ9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.826e-7■■□□□ 13.9
DDX55Q8NHQ9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.171e-7■■□□□ 13.9
DDX55Q8NHQ9 NUDCD3-202ENST00000355451 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.375e-9■■□□□ 13.9
DDX55Q8NHQ9 NUDCD3-203ENST00000460110 3641 ntTSL 1 (best)10.26□□□□□ -0.775e-9■■□□□ 13.9
DDX55Q8NHQ9 NUDCD3-209ENST00000487118 314 ntTSL 39.83□□□□□ -0.845e-9■■□□□ 13.9
DDX55Q8NHQ9 ANGPTL8-202ENST00000587543 432 ntTSL 1 (best)15.12■□□□□ 0.011e-14■■□□□ 13.9
DDX55Q8NHQ9 R3HDM4-204ENST00000589428 1704 ntTSL 325.38■■□□□ 1.654e-29■■□□□ 13.9
DDX55Q8NHQ9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.08■■□□□ 1.614e-29■■□□□ 13.9
DDX55Q8NHQ9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.594e-29■■□□□ 13.9
DDX55Q8NHQ9 GPX3-202ENST00000517973 612 ntTSL 3 BASIC16.09■□□□□ 0.173e-16■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.065e-7■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.85e-7■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.61■□□□□ 0.735e-7■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.725e-7■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-204ENST00000376666 2100 ntTSL 516.54■□□□□ 0.245e-7■■□□□ 13.9
DDX55Q8NHQ9 ENTPD6-217ENST00000485936 2588 ntTSL 216.18■□□□□ 0.185e-7■■□□□ 13.9
DDX55Q8NHQ9 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.278e-19■■□□□ 13.9
DDX55Q8NHQ9 AC046185.1-201ENST00000580553 2128 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.348e-19■■□□□ 13.9
DDX55Q8NHQ9 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC19.37■□□□□ 0.692e-7■■□□□ 13.9
DDX55Q8NHQ9 TOM1-205ENST00000424387 2211 ntTSL 518.89■□□□□ 0.612e-7■■□□□ 13.9
DDX55Q8NHQ9 TOM1-216ENST00000492723 2568 ntTSL 218.38■□□□□ 0.532e-7■■□□□ 13.9
Retrieved 100 of 15,504 protein–RNA pairs in 103.3 ms