RNA–Protein interactions for RNA: ENST00000606788.5

CTSA-214, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 3,056 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-214ENST00000606788 NISCHQ9Y2I1 1504 aa33.8■■■■□ 3
CTSA-214ENST00000606788 SHROOM4Q9ULL8 1493 aa29.14■■■□□ 2.25
CTSA-214ENST00000606788 DCAF8L2P0C7V8 631 aa28.97■■■□□ 2.23
CTSA-214ENST00000606788 CCDC180Q9P1Z9 1646 aa28.67■■■□□ 2.18
CTSA-214ENST00000606788 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
CTSA-214ENST00000606788 SUPT5HO00267 1087 aaKnown RBP28.34■■■□□ 2.13
CTSA-214ENST00000606788 ABCC9O60706 1549 aa27.63■■■□□ 2.01
CTSA-214ENST00000606788 DCAF1Q9Y4B6 1507 aa27.42■■□□□ 1.98
CTSA-214ENST00000606788 SCRIBQ14160 1630 aa27.29■■□□□ 1.96
CTSA-214ENST00000606788 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
CTSA-214ENST00000606788 MYO15BQ96JP2 1530 aa26.76■■□□□ 1.87
CTSA-214ENST00000606788 NACADO15069 1562 aa26.75■■□□□ 1.87
CTSA-214ENST00000606788 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
CTSA-214ENST00000606788 CECR2Q9BXF3 1484 aa26.64■■□□□ 1.86
CTSA-214ENST00000606788 PABPN1Q86U42 306 aaKnown RBP eCLIP26.52■■□□□ 1.841e-6■■□□□ 12.3
CTSA-214ENST00000606788 RB1CC1Q8TDY2 1594 aa26.51■■□□□ 1.83
CTSA-214ENST00000606788 LOC105371045A0A1W2PR82 267 aa26.46■■□□□ 1.83
CTSA-214ENST00000606788 MROH2BQ7Z745 1585 aa26.4■■□□□ 1.82
CTSA-214ENST00000606788 EHMT2Q96KQ7 1210 aa26.37■■□□□ 1.81
CTSA-214ENST00000606788 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.8
CTSA-214ENST00000606788 TRIM41Q8WV44 630 aa26.23■■□□□ 1.79
CTSA-214ENST00000606788 WIZO95785 1651 aa26.22■■□□□ 1.79
CTSA-214ENST00000606788 UNC13AQ9UPW8 1703 aa26.08■■□□□ 1.77
CTSA-214ENST00000606788 BAZ1AQ9NRL2 1556 aaPredicted RBP25.96■■□□□ 1.75
CTSA-214ENST00000606788 PCGF6Q9BYE7 350 aa25.92■■□□□ 1.74
CTSA-214ENST00000606788 BICRAQ9NZM4 1560 aa25.84■■□□□ 1.73
CTSA-214ENST00000606788 SMARCA4P51532 1647 aa25.82■■□□□ 1.72
CTSA-214ENST00000606788 CCDC88BA6NC98 1476 aa25.69■■□□□ 1.7
CTSA-214ENST00000606788 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
CTSA-214ENST00000606788 ABCC8Q09428 1581 aa25.6■■□□□ 1.69
CTSA-214ENST00000606788 PPARGC1BQ86YN6 1023 aaKnown RBP25.54■■□□□ 1.68
CTSA-214ENST00000606788 SMARCA2P51531 1590 aa25.53■■□□□ 1.68
CTSA-214ENST00000606788 ATAD2BQ9ULI0 1458 aa25.36■■□□□ 1.65
CTSA-214ENST00000606788 EIF4G1Q04637 1599 aaKnown RBP25.36■■□□□ 1.65
CTSA-214ENST00000606788 TTBK1Q5TCY1 1321 aaPredicted RBP25.33■■□□□ 1.65
CTSA-214ENST00000606788 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.65
CTSA-214ENST00000606788 HRCP23327 699 aa25.28■■□□□ 1.64
CTSA-214ENST00000606788 SOGA1O94964 1423 aa25.28■■□□□ 1.64
CTSA-214ENST00000606788 TRIM26Q12899 539 aaPredicted RBP25.24■■□□□ 1.63
CTSA-214ENST00000606788 RUSC2Q8N2Y8 1516 aa25.21■■□□□ 1.63
CTSA-214ENST00000606788 UBTFP17480 764 aaKnown RBP25.17■■□□□ 1.62
CTSA-214ENST00000606788 RANGAP1P46060 587 aaPredicted RBP25.15■■□□□ 1.62
CTSA-214ENST00000606788 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
CTSA-214ENST00000606788 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
CTSA-214ENST00000606788 CSRNP3Q8WYN3 585 aa25.07■■□□□ 1.6
CTSA-214ENST00000606788 SYNJ1O43426 1573 aa24.96■■□□□ 1.59
CTSA-214ENST00000606788 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
CTSA-214ENST00000606788 CEP162Q5TB80 1403 aa24.85■■□□□ 1.57
CTSA-214ENST00000606788 TNIKQ9UKE5 1360 aa24.71■■□□□ 1.55
CTSA-214ENST00000606788 HMGXB3Q12766 1538 aa24.7■■□□□ 1.54
CTSA-214ENST00000606788 EEA1Q15075 1411 aa24.69■■□□□ 1.54
CTSA-214ENST00000606788 GOLGA3Q08378 1498 aa24.68■■□□□ 1.54
CTSA-214ENST00000606788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.65■■□□□ 1.54
CTSA-214ENST00000606788 RAPGEF2Q9Y4G8 1499 aa24.63■■□□□ 1.53
CTSA-214ENST00000606788 DNAJC5BQ9UF47 199 aa24.63■■□□□ 1.53
CTSA-214ENST00000606788 CC2D2AQ9P2K1 1620 aa24.62■■□□□ 1.53
CTSA-214ENST00000606788 CUX1P39880 1505 aa24.56■■□□□ 1.52
CTSA-214ENST00000606788 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
CTSA-214ENST00000606788 CFTRP13569 1480 aa24.55■■□□□ 1.52
CTSA-214ENST00000606788 TOP2BQ02880 1626 aa24.54■■□□□ 1.52
CTSA-214ENST00000606788 CLIP1P30622 1438 aa24.51■■□□□ 1.51
CTSA-214ENST00000606788 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
CTSA-214ENST00000606788 CCER1Q8TC90 406 aaPredicted RBP24.47■■□□□ 1.51
CTSA-214ENST00000606788 NESP48681 1621 aa24.44■■□□□ 1.5
CTSA-214ENST00000606788 APLP2Q06481 763 aa24.41■■□□□ 1.5
CTSA-214ENST00000606788 HNRNPUL2Q1KMD3 747 aaKnown RBP24.4■■□□□ 1.5
CTSA-214ENST00000606788 BIVM-ERCC5R4GMW8 1640 aa24.37■■□□□ 1.49
CTSA-214ENST00000606788 KIF21BO75037 1637 aa24.37■■□□□ 1.49
CTSA-214ENST00000606788 KIF27Q86VH2 1401 aa24.36■■□□□ 1.49
CTSA-214ENST00000606788 CUX2O14529 1486 aa24.34■■□□□ 1.49
CTSA-214ENST00000606788 ZEB1P37275 1124 aaPredicted RBP24.29■■□□□ 1.48
CTSA-214ENST00000606788 FANCD2Q9BXW9 1451 aa24.28■■□□□ 1.48
CTSA-214ENST00000606788 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
CTSA-214ENST00000606788 P3H3Q8IVL6 736 aa24.25■■□□□ 1.47
CTSA-214ENST00000606788 PRXQ9BXM0 1461 aa24.24■■□□□ 1.47
CTSA-214ENST00000606788 VPS8Q8N3P4 1428 aa24.22■■□□□ 1.47
CTSA-214ENST00000606788 RAD54L2Q9Y4B4 1467 aa24.21■■□□□ 1.47
CTSA-214ENST00000606788 ATP1B4Q9UN42 357 aaPredicted RBP24.19■■□□□ 1.46
CTSA-214ENST00000606788 IGF1RP08069 1367 aa24.18■■□□□ 1.46
CTSA-214ENST00000606788 KANK4Q5T7N3 995 aaPredicted RBP24.16■■□□□ 1.46
CTSA-214ENST00000606788 CARMIL1Q5VZK9 1371 aa24.11■■□□□ 1.45
CTSA-214ENST00000606788 ARAP1Q96P48 1450 aa24.09■■□□□ 1.45
CTSA-214ENST00000606788 ITGAEP38570 1179 aa24.07■■□□□ 1.44
CTSA-214ENST00000606788 ERICH3Q5RHP9 1530 aa24.05■■□□□ 1.44
CTSA-214ENST00000606788 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
CTSA-214ENST00000606788 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
CTSA-214ENST00000606788 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
CTSA-214ENST00000606788 POLA1P09884 1462 aaPredicted RBP24.01■■□□□ 1.43
CTSA-214ENST00000606788 ARHGAP35Q9NRY4 1499 aa23.97■■□□□ 1.43
CTSA-214ENST00000606788 URB2Q14146 1524 aaKnown RBP23.94■■□□□ 1.42
CTSA-214ENST00000606788 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
CTSA-214ENST00000606788 PDS5BQ9NTI5 1447 aa23.85■■□□□ 1.41
CTSA-214ENST00000606788 FHOD3Q2V2M9 1422 aa23.81■■□□□ 1.4
CTSA-214ENST00000606788 LAMC3Q9Y6N6 1575 aa23.81■■□□□ 1.4
CTSA-214ENST00000606788 ABCA10Q8WWZ4 1543 aa23.8■■□□□ 1.4
CTSA-214ENST00000606788 KIF21AQ7Z4S6 1674 aa23.77■■□□□ 1.4
CTSA-214ENST00000606788 ARID3CA6NKF2 412 aa23.76■■□□□ 1.39
CTSA-214ENST00000606788 FAM50AQ14320 339 aaKnown RBP23.73■■□□□ 1.39
CTSA-214ENST00000606788 AQRO60306 1485 aaKnown RBP eCLIP23.69■■□□□ 1.386e-8■■■■□ 26.2
CTSA-214ENST00000606788 GAPVD1Q14C86 1478 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms