RNA–Protein interactions for RNA: ENST00000395788.3

C6orf48-208, Transcript of chromosome 6 open reading frame 48, humanhuman

APPRIS P1 TSL 2 BASIC

Gene C6orf48, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C6orf48-208ENST00000395788 AEBP2Q6ZN18 517 aaPredicted RBP25.05■■□□□ 1.6
C6orf48-208ENST00000395788 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.33
C6orf48-208ENST00000395788 SENP3Q9H4L4 574 aaPredicted RBP21.49■■□□□ 1.03
C6orf48-208ENST00000395788 PHF23Q9BUL5 403 aaPredicted RBP21.08■□□□□ 0.97
C6orf48-208ENST00000395788 FOXD1Q16676 465 aa20.1■□□□□ 0.81
C6orf48-208ENST00000395788 POTEDQ86YR6 584 aa19.85■□□□□ 0.77
C6orf48-208ENST00000395788 MSH5O43196 834 aa19.1■□□□□ 0.65
C6orf48-208ENST00000395788 PIAS4Q8N2W9 510 aaPredicted RBP18.59■□□□□ 0.57
C6orf48-208ENST00000395788 PPP6R1Q9UPN7 881 aa18.23■□□□□ 0.51
C6orf48-208ENST00000395788 PLPPR3Q6T4P5 718 aa18.12■□□□□ 0.49
C6orf48-208ENST00000395788 ADRA2BP18089 450 aa18.11■□□□□ 0.49
C6orf48-208ENST00000395788 DMRT2Q9Y5R5 561 aa16.94■□□□□ 0.3
C6orf48-208ENST00000395788 MAPK8IP2Q13387 824 aaPredicted RBP16.85■□□□□ 0.29
C6orf48-208ENST00000395788 CACNB1Q02641 598 aaPredicted RBP16.78■□□□□ 0.28
C6orf48-208ENST00000395788 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
C6orf48-208ENST00000395788 RNF39Q9H2S5 420 aa16.24■□□□□ 0.19
C6orf48-208ENST00000395788 DCAF8L1A6NGE4 600 aa16.19■□□□□ 0.18
C6orf48-208ENST00000395788 HOXD11P31277 338 aaPredicted RBP16.04■□□□□ 0.16
C6orf48-208ENST00000395788 C1QBPQ07021 282 aaKnown RBP15.96■□□□□ 0.15
C6orf48-208ENST00000395788 PPP4R3CPQ6ZMV5 832 aa15.78■□□□□ 0.12
C6orf48-208ENST00000395788 RNF216Q9NWF9 866 aaPredicted RBP15.71■□□□□ 0.11
C6orf48-208ENST00000395788 CNKSR2Q8WXI2 1034 aa15.67■□□□□ 0.1
C6orf48-208ENST00000395788 DNAJC5BQ9UF47 199 aa15.67■□□□□ 0.1
C6orf48-208ENST00000395788 POTEHQ6S545 545 aa15.4■□□□□ 0.06
C6orf48-208ENST00000395788 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.22■□□□□ 0.031e-10■□□□□ 10.7
C6orf48-208ENST00000395788 DSG3P32926 999 aa14.95□□□□□ -0.02
C6orf48-208ENST00000395788 NCBP3Q53F19 620 aaKnown RBP14.95□□□□□ -0.02
C6orf48-208ENST00000395788 U3KPZ7 1027 aaPredicted RBP14.86□□□□□ -0.03
C6orf48-208ENST00000395788 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
C6orf48-208ENST00000395788 CAPN15O75808 1086 aa14.82□□□□□ -0.04
C6orf48-208ENST00000395788 NPM3O75607 178 aaKnown RBP14.75□□□□□ -0.05
C6orf48-208ENST00000395788 ABCB7O75027 752 aa14.42□□□□□ -0.1
C6orf48-208ENST00000395788 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
C6orf48-208ENST00000395788 ZNF219Q9P2Y4 722 aaPredicted RBP14.4□□□□□ -0.1
C6orf48-208ENST00000395788 APLP2Q06481 763 aa14.37□□□□□ -0.11
C6orf48-208ENST00000395788 RBM42Q9BTD8 480 aaKnown RBP14.29□□□□□ -0.12
C6orf48-208ENST00000395788 SLC4A2P04920 1241 aa14.28□□□□□ -0.12
C6orf48-208ENST00000395788 CHRDL2Q6WN34 429 aa14.25□□□□□ -0.13
C6orf48-208ENST00000395788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.18□□□□□ -0.14
C6orf48-208ENST00000395788 HNRNPUL2Q1KMD3 747 aaKnown RBP14.18□□□□□ -0.14
C6orf48-208ENST00000395788 SP7Q8TDD2 431 aaPredicted RBP14.11□□□□□ -0.15
C6orf48-208ENST00000395788 SAMD1Q6SPF0 538 aaPredicted RBP14.07□□□□□ -0.16
C6orf48-208ENST00000395788 POLA2Q14181 598 aa13.89□□□□□ -0.19
C6orf48-208ENST00000395788 KCNA4P22459 653 aa13.82□□□□□ -0.2
C6orf48-208ENST00000395788 AKT1S1Q96B36 256 aa13.81□□□□□ -0.2
C6orf48-208ENST00000395788 PIP4P2Q8N4L2 257 aa13.76□□□□□ -0.21
C6orf48-208ENST00000395788 HAX1O00165 279 aa13.67□□□□□ -0.22
C6orf48-208ENST00000395788 MYCNP04198 464 aaPredicted RBP13.66□□□□□ -0.22
C6orf48-208ENST00000395788 REM2Q8IYK8 340 aaPredicted RBP13.66□□□□□ -0.22
C6orf48-208ENST00000395788 NISCHQ9Y2I1 1504 aa13.61□□□□□ -0.23
C6orf48-208ENST00000395788 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.24
C6orf48-208ENST00000395788 ZBTB12Q9Y330 459 aaPredicted RBP13.58□□□□□ -0.24
C6orf48-208ENST00000395788 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
C6orf48-208ENST00000395788 EVX2Q03828 476 aa13.47□□□□□ -0.25
C6orf48-208ENST00000395788 OSCARQ8IYS5 282 aa13.47□□□□□ -0.25
C6orf48-208ENST00000395788 ATF5Q9Y2D1 282 aaPredicted RBP13.39□□□□□ -0.27
C6orf48-208ENST00000395788 LHX8Q68G74 356 aa13.21□□□□□ -0.29
C6orf48-208ENST00000395788 C19orf67A6NJJ6 358 aa13.17□□□□□ -0.3
C6orf48-208ENST00000395788 PRKAR2AP13861 404 aaKnown RBP13.16□□□□□ -0.3
C6orf48-208ENST00000395788 GABBR2O75899 941 aa13.13□□□□□ -0.31
C6orf48-208ENST00000395788 FOXD4L1Q9NU39 408 aa13.13□□□□□ -0.31
C6orf48-208ENST00000395788 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
C6orf48-208ENST00000395788 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
C6orf48-208ENST00000395788 SPDYE2Q495Y8 402 aa13.1□□□□□ -0.31
C6orf48-208ENST00000395788 SPDYE1Q8NFV5 336 aaPredicted RBP13.03□□□□□ -0.32
C6orf48-208ENST00000395788 CLEC11AQ9Y240 323 aa13□□□□□ -0.33
C6orf48-208ENST00000395788 PLSCR2Q9NRY7 297 aa12.92□□□□□ -0.34
C6orf48-208ENST00000395788 FBLN2P98095 1184 aa12.9□□□□□ -0.34
C6orf48-208ENST00000395788 SLC4A1APQ9BWU0 796 aaKnown RBP12.89□□□□□ -0.35
C6orf48-208ENST00000395788 SSUH2Q9Y2M2 353 aa12.86□□□□□ -0.35
C6orf48-208ENST00000395788 POTEIP0CG38 1075 aa12.85□□□□□ -0.35
C6orf48-208ENST00000395788 CHADLQ6NUI6 762 aa12.84□□□□□ -0.35
C6orf48-208ENST00000395788 ATXN8OSP0DMR3 200 aa12.83□□□□□ -0.36
C6orf48-208ENST00000395788 ZNF692Q9BU19 519 aaPredicted RBP12.79□□□□□ -0.36
C6orf48-208ENST00000395788 MKRN4PQ13434 485 aaPredicted RBP12.75□□□□□ -0.37
C6orf48-208ENST00000395788 CLCN6P51797 869 aa12.72□□□□□ -0.37
C6orf48-208ENST00000395788 ZBTB22O15209 634 aa12.71□□□□□ -0.37
C6orf48-208ENST00000395788 CD44P16070 742 aaKnown RBP12.71□□□□□ -0.37
C6orf48-208ENST00000395788 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
C6orf48-208ENST00000395788 FARP1Q9Y4F1 1045 aaPredicted RBP12.61□□□□□ -0.39
C6orf48-208ENST00000395788 DCBLD2Q96PD2 775 aa12.6□□□□□ -0.39
C6orf48-208ENST00000395788 PABPN1Q86U42 306 aaKnown RBP eCLIP12.58□□□□□ -0.4
C6orf48-208ENST00000395788 OTUD5Q96G74 571 aa12.52□□□□□ -0.41
C6orf48-208ENST00000395788 ZNF579Q8NAF0 562 aaKnown RBP12.51□□□□□ -0.41
C6orf48-208ENST00000395788 POTEMA6NI47 508 aa12.47□□□□□ -0.41
C6orf48-208ENST00000395788 POTEB2H3BUK9 544 aa12.41□□□□□ -0.42
C6orf48-208ENST00000395788 POTEGQ6S5H5 508 aa12.41□□□□□ -0.42
C6orf48-208ENST00000395788 ZRANB1Q9UGI0 708 aa12.4□□□□□ -0.42
C6orf48-208ENST00000395788 GALR2O43603 387 aaPredicted RBP12.37□□□□□ -0.43
C6orf48-208ENST00000395788 PCDH10Q9P2E7 1040 aa12.35□□□□□ -0.43
C6orf48-208ENST00000395788 CREBZFQ9NS37 354 aa12.24□□□□□ -0.45
C6orf48-208ENST00000395788 PELP1Q8IZL8 1130 aaKnown RBP12.21□□□□□ -0.45
C6orf48-208ENST00000395788 PHF12Q96QT6 1004 aa12.17□□□□□ -0.46
C6orf48-208ENST00000395788 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
C6orf48-208ENST00000395788 POTEJP0CG39 1038 aa12.13□□□□□ -0.47
C6orf48-208ENST00000395788 LCE2DQ5TA82 110 aaPredicted RBP12.13□□□□□ -0.47
C6orf48-208ENST00000395788 METRNQ9UJH8 293 aa12.12□□□□□ -0.47
C6orf48-208ENST00000395788 STAG3Q9UJ98 1225 aa12.11□□□□□ -0.47
C6orf48-208ENST00000395788 ASTLQ6HA08 431 aaPredicted RBP12.1□□□□□ -0.47
C6orf48-208ENST00000395788 MAMSTRQ6ZN01 415 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms