RNA–Protein interactions for RNA: ENST00000354880.9

CTSA-202, Transcript of cathepsin A, humanhuman

TSL 2 BASIC

Gene CTSA, Length 1,820 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-202ENST00000354880 NISCHQ9Y2I1 1504 aa35.92■■■■□ 3.34
CTSA-202ENST00000354880 CCDC180Q9P1Z9 1646 aa31.46■■■□□ 2.63
CTSA-202ENST00000354880 ZCCHC6Q5VYS8 1495 aaKnown RBP30.13■■■□□ 2.41
CTSA-202ENST00000354880 ABCC9O60706 1549 aa29.95■■■□□ 2.38
CTSA-202ENST00000354880 DCAF8L2P0C7V8 631 aa29.73■■■□□ 2.35
CTSA-202ENST00000354880 DCAF1Q9Y4B6 1507 aa29.72■■■□□ 2.35
CTSA-202ENST00000354880 MYO15BQ96JP2 1530 aa29.47■■■□□ 2.31
CTSA-202ENST00000354880 NACADO15069 1562 aa29.36■■■□□ 2.29
CTSA-202ENST00000354880 RB1CC1Q8TDY2 1594 aa29.17■■■□□ 2.26
CTSA-202ENST00000354880 SHROOM4Q9ULL8 1493 aa29.08■■■□□ 2.25
CTSA-202ENST00000354880 SCRIBQ14160 1630 aa28.87■■■□□ 2.21
CTSA-202ENST00000354880 UNC13AQ9UPW8 1703 aa28.56■■■□□ 2.16
CTSA-202ENST00000354880 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
CTSA-202ENST00000354880 PABPN1Q86U42 306 aaKnown RBP eCLIP28.18■■■□□ 2.11e-6■■□□□ 12.3
CTSA-202ENST00000354880 CECR2Q9BXF3 1484 aa27.91■■■□□ 2.06
CTSA-202ENST00000354880 SUPT5HO00267 1087 aaKnown RBP27.87■■■□□ 2.05
CTSA-202ENST00000354880 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
CTSA-202ENST00000354880 RSF1Q96T23 1441 aaPredicted RBP27.76■■■□□ 2.03
CTSA-202ENST00000354880 MROH2BQ7Z745 1585 aa27.72■■■□□ 2.03
CTSA-202ENST00000354880 SMARCA4P51532 1647 aa27.67■■■□□ 2.02
CTSA-202ENST00000354880 WIZO95785 1651 aa27.49■■□□□ 1.99
CTSA-202ENST00000354880 EIF4G1Q04637 1599 aaKnown RBP27.46■■□□□ 1.99
CTSA-202ENST00000354880 PEG3Q9GZU2 1588 aa27.36■■□□□ 1.97
CTSA-202ENST00000354880 ATAD2BQ9ULI0 1458 aa27.28■■□□□ 1.96
CTSA-202ENST00000354880 SMARCA2P51531 1590 aa27.27■■□□□ 1.96
CTSA-202ENST00000354880 TOP2AP11388 1531 aaKnown RBP27.21■■□□□ 1.95
CTSA-202ENST00000354880 BAZ1BQ9UIG0 1483 aaKnown RBP27.12■■□□□ 1.93
CTSA-202ENST00000354880 CC2D2AQ9P2K1 1620 aa27.11■■□□□ 1.93
CTSA-202ENST00000354880 NCAPD3P42695 1498 aa27.1■■□□□ 1.93
CTSA-202ENST00000354880 HMGXB3Q12766 1538 aa27.04■■□□□ 1.92
CTSA-202ENST00000354880 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
CTSA-202ENST00000354880 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
CTSA-202ENST00000354880 CHIC1Q5VXU3 224 aa26.55■■□□□ 1.84
CTSA-202ENST00000354880 CFTRP13569 1480 aa26.42■■□□□ 1.82
CTSA-202ENST00000354880 CADPSQ9ULU8 1353 aa26.39■■□□□ 1.81
CTSA-202ENST00000354880 PRDM2Q13029 1718 aa26.28■■□□□ 1.8
CTSA-202ENST00000354880 ABCC8Q09428 1581 aa26.26■■□□□ 1.79
CTSA-202ENST00000354880 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
CTSA-202ENST00000354880 LAMC3Q9Y6N6 1575 aa26.22■■□□□ 1.79
CTSA-202ENST00000354880 NESP48681 1621 aa26.21■■□□□ 1.79
CTSA-202ENST00000354880 WRNQ14191 1432 aaPredicted RBP eCLIP26.15■■□□□ 1.78
CTSA-202ENST00000354880 FANCD2Q9BXW9 1451 aa26.09■■□□□ 1.77
CTSA-202ENST00000354880 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
CTSA-202ENST00000354880 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
CTSA-202ENST00000354880 TOP2BQ02880 1626 aa25.97■■□□□ 1.75
CTSA-202ENST00000354880 CEP164Q9UPV0 1460 aa25.96■■□□□ 1.75
CTSA-202ENST00000354880 CUX1P39880 1505 aa25.95■■□□□ 1.74
CTSA-202ENST00000354880 BIVM-ERCC5R4GMW8 1640 aa25.94■■□□□ 1.74
CTSA-202ENST00000354880 KIF21AQ7Z4S6 1674 aa25.9■■□□□ 1.74
CTSA-202ENST00000354880 DNMBPQ6XZF7 1577 aa25.81■■□□□ 1.72
CTSA-202ENST00000354880 TOPBP1Q92547 1522 aa25.77■■□□□ 1.72
CTSA-202ENST00000354880 URB2Q14146 1524 aaKnown RBP25.76■■□□□ 1.72
CTSA-202ENST00000354880 FAM9AQ8IZU1 332 aaPredicted RBP25.73■■□□□ 1.71
CTSA-202ENST00000354880 ERCC6Q03468 1493 aa25.72■■□□□ 1.71
CTSA-202ENST00000354880 SOGA1O94964 1423 aa25.72■■□□□ 1.71
CTSA-202ENST00000354880 FGD5Q6ZNL6 1462 aa25.71■■□□□ 1.71
CTSA-202ENST00000354880 MRC2Q9UBG0 1479 aa25.7■■□□□ 1.7
CTSA-202ENST00000354880 EEA1Q15075 1411 aa25.65■■□□□ 1.7
CTSA-202ENST00000354880 POLA1P09884 1462 aaPredicted RBP25.63■■□□□ 1.69
CTSA-202ENST00000354880 RUSC2Q8N2Y8 1516 aa25.62■■□□□ 1.69
CTSA-202ENST00000354880 WDR62O43379 1518 aa25.57■■□□□ 1.68
CTSA-202ENST00000354880 THOC2Q8NI27 1593 aaKnown RBP25.55■■□□□ 1.68
CTSA-202ENST00000354880 RAD54L2Q9Y4B4 1467 aa25.53■■□□□ 1.68
CTSA-202ENST00000354880 CSRNP3Q8WYN3 585 aa25.52■■□□□ 1.68
CTSA-202ENST00000354880 KIF27Q86VH2 1401 aa25.52■■□□□ 1.68
CTSA-202ENST00000354880 LOC105371045A0A1W2PR82 267 aa25.51■■□□□ 1.67
CTSA-202ENST00000354880 CUX2O14529 1486 aa25.5■■□□□ 1.67
CTSA-202ENST00000354880 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
CTSA-202ENST00000354880 WDR97A6NE52 1622 aa25.42■■□□□ 1.66
CTSA-202ENST00000354880 TARBP1Q13395 1621 aaKnown RBP25.41■■□□□ 1.66
CTSA-202ENST00000354880 EHMT2Q96KQ7 1210 aa25.35■■□□□ 1.65
CTSA-202ENST00000354880 IFT140Q96RY7 1462 aa25.35■■□□□ 1.65
CTSA-202ENST00000354880 KIF21BO75037 1637 aa25.32■■□□□ 1.64
CTSA-202ENST00000354880 TDRD9Q8NDG6 1382 aaKnown RBP25.31■■□□□ 1.64
CTSA-202ENST00000354880 IGF1RP08069 1367 aa25.3■■□□□ 1.64
CTSA-202ENST00000354880 ABCA5Q8WWZ7 1642 aa25.29■■□□□ 1.64
CTSA-202ENST00000354880 GOLGA3Q08378 1498 aa25.27■■□□□ 1.64
CTSA-202ENST00000354880 PRXQ9BXM0 1461 aa25.27■■□□□ 1.64
CTSA-202ENST00000354880 GAPVD1Q14C86 1478 aa25.27■■□□□ 1.64
CTSA-202ENST00000354880 RAPGEF2Q9Y4G8 1499 aa25.21■■□□□ 1.63
CTSA-202ENST00000354880 ERICH3Q5RHP9 1530 aa25.2■■□□□ 1.63
CTSA-202ENST00000354880 ZNF608Q9ULD9 1512 aaPredicted RBP25.2■■□□□ 1.62
CTSA-202ENST00000354880 AQRO60306 1485 aaKnown RBP eCLIP25.19■■□□□ 1.626e-8■■■■□ 26.2
CTSA-202ENST00000354880 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
CTSA-202ENST00000354880 UBTFP17480 764 aaKnown RBP25.17■■□□□ 1.62
CTSA-202ENST00000354880 CUL7Q14999 1698 aa25.15■■□□□ 1.62
CTSA-202ENST00000354880 TNIKQ9UKE5 1360 aa25.14■■□□□ 1.62
CTSA-202ENST00000354880 PBRM1Q86U86 1689 aa25.13■■□□□ 1.61
CTSA-202ENST00000354880 EIF4G3O43432 1585 aaKnown RBP25.12■■□□□ 1.61
CTSA-202ENST00000354880 GRIN2BQ13224 1484 aa25.11■■□□□ 1.61
CTSA-202ENST00000354880 FHAD1B1AJZ9 1412 aa24.99■■□□□ 1.59
CTSA-202ENST00000354880 CEP162Q5TB80 1403 aa24.98■■□□□ 1.59
CTSA-202ENST00000354880 ADAMTS12P58397 1594 aa24.98■■□□□ 1.59
CTSA-202ENST00000354880 SNAPC4Q5SXM2 1469 aa24.96■■□□□ 1.59
CTSA-202ENST00000354880 MAGI1Q96QZ7 1491 aaPredicted RBP24.93■■□□□ 1.58
CTSA-202ENST00000354880 CLIP1P30622 1438 aa24.85■■□□□ 1.57
CTSA-202ENST00000354880 SYNJ2O15056 1496 aa24.83■■□□□ 1.57
CTSA-202ENST00000354880 CTTNBP2Q8WZ74 1663 aa24.82■■□□□ 1.56
CTSA-202ENST00000354880 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
CTSA-202ENST00000354880 GRIN2AQ12879 1464 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms