RNA–Protein interactions for RNA: ENST00000589428.5

R3HDM4-204, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,704 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-204ENST00000589428 NISCHQ9Y2I1 1504 aa50.81■■■■■ 5.72
R3HDM4-204ENST00000589428 CCDC180Q9P1Z9 1646 aa45.08■■■■■ 4.81
R3HDM4-204ENST00000589428 ABCC9O60706 1549 aa43.79■■■■■ 4.6
R3HDM4-204ENST00000589428 ZCCHC6Q5VYS8 1495 aaKnown RBP42.41■■■■■ 4.38
R3HDM4-204ENST00000589428 DCAF8L2P0C7V8 631 aa42.33■■■■■ 4.37
R3HDM4-204ENST00000589428 NACADO15069 1562 aa42.29■■■■■ 4.36
R3HDM4-204ENST00000589428 RB1CC1Q8TDY2 1594 aa42.28■■■■■ 4.36
R3HDM4-204ENST00000589428 MYO15BQ96JP2 1530 aa42.13■■■■■ 4.33
R3HDM4-204ENST00000589428 DCAF1Q9Y4B6 1507 aa42.06■■■■■ 4.32
R3HDM4-204ENST00000589428 UNC13AQ9UPW8 1703 aa41.28■■■■■ 4.2
R3HDM4-204ENST00000589428 SCRIBQ14160 1630 aa41.16■■■■■ 4.18
R3HDM4-204ENST00000589428 PABPN1Q86U42 306 aaKnown RBP eCLIP40.93■■■■■ 4.144e-10■□□□□ 11.2
R3HDM4-204ENST00000589428 BICRAQ9NZM4 1560 aa40.93■■■■■ 4.14
R3HDM4-204ENST00000589428 SHROOM4Q9ULL8 1493 aa40.6■■■■■ 4.09
R3HDM4-204ENST00000589428 EIF4G1Q04637 1599 aaKnown RBP39.87■■■■□ 3.97
R3HDM4-204ENST00000589428 DNAJC5BQ9UF47 199 aa39.81■■■■□ 3.96
R3HDM4-204ENST00000589428 CC2D2AQ9P2K1 1620 aa39.62■■■■□ 3.93
R3HDM4-204ENST00000589428 CECR2Q9BXF3 1484 aa39.52■■■■□ 3.92
R3HDM4-204ENST00000589428 BAZ1AQ9NRL2 1556 aaPredicted RBP39.39■■■■□ 3.9
R3HDM4-204ENST00000589428 SMARCA4P51532 1647 aa39.38■■■■□ 3.9
R3HDM4-204ENST00000589428 MROH2BQ7Z745 1585 aa39.15■■■■□ 3.86
R3HDM4-204ENST00000589428 SMARCA2P51531 1590 aa39.08■■■■□ 3.85
R3HDM4-204ENST00000589428 ATAD2BQ9ULI0 1458 aa39.07■■■■□ 3.84
R3HDM4-204ENST00000589428 NCAPD3P42695 1498 aa38.99■■■■□ 3.83
R3HDM4-204ENST00000589428 PEG3Q9GZU2 1588 aa38.98■■■■□ 3.83
R3HDM4-204ENST00000589428 HMGXB3Q12766 1538 aa38.88■■■■□ 3.81
R3HDM4-204ENST00000589428 BAZ1BQ9UIG0 1483 aaKnown RBP38.81■■■■□ 3.8
R3HDM4-204ENST00000589428 RSF1Q96T23 1441 aaPredicted RBP38.81■■■■□ 3.8
R3HDM4-204ENST00000589428 WIZO95785 1651 aa38.76■■■■□ 3.8
R3HDM4-204ENST00000589428 TOP2AP11388 1531 aaKnown RBP38.39■■■■□ 3.74
R3HDM4-204ENST00000589428 SUPT5HO00267 1087 aaKnown RBP38.08■■■■□ 3.69
R3HDM4-204ENST00000589428 LAMC3Q9Y6N6 1575 aa37.96■■■■□ 3.67
R3HDM4-204ENST00000589428 NESP48681 1621 aa37.96■■■■□ 3.67
R3HDM4-204ENST00000589428 CCDC88BA6NC98 1476 aa37.9■■■■□ 3.66
R3HDM4-204ENST00000589428 CADPSQ9ULU8 1353 aa37.88■■■■□ 3.65
R3HDM4-204ENST00000589428 ERCC6Q03468 1493 aa37.77■■■■□ 3.64
R3HDM4-204ENST00000589428 CFTRP13569 1480 aa37.72■■■■□ 3.63
R3HDM4-204ENST00000589428 PDS5BQ9NTI5 1447 aa37.69■■■■□ 3.62
R3HDM4-204ENST00000589428 KIF21AQ7Z4S6 1674 aa37.56■■■■□ 3.6
R3HDM4-204ENST00000589428 PRDM2Q13029 1718 aa37.51■■■■□ 3.6
R3HDM4-204ENST00000589428 FANCD2Q9BXW9 1451 aa37.47■■■■□ 3.59
R3HDM4-204ENST00000589428 CEP164Q9UPV0 1460 aa37.42■■■■□ 3.58
R3HDM4-204ENST00000589428 THOC2Q8NI27 1593 aaKnown RBP37.35■■■■□ 3.57
R3HDM4-204ENST00000589428 MRC2Q9UBG0 1479 aa37.29■■■■□ 3.56
R3HDM4-204ENST00000589428 CUX2O14529 1486 aa37.23■■■■□ 3.55
R3HDM4-204ENST00000589428 WDR62O43379 1518 aa37.15■■■■□ 3.54
R3HDM4-204ENST00000589428 URB2Q14146 1524 aaKnown RBP37.05■■■■□ 3.52
R3HDM4-204ENST00000589428 ABCC8Q09428 1581 aa36.93■■■■□ 3.5
R3HDM4-204ENST00000589428 DNMBPQ6XZF7 1577 aa36.91■■■■□ 3.5
R3HDM4-204ENST00000589428 TOPBP1Q92547 1522 aa36.9■■■■□ 3.5
R3HDM4-204ENST00000589428 CUX1P39880 1505 aa36.73■■■■□ 3.47
R3HDM4-204ENST00000589428 WRNQ14191 1432 aaPredicted RBP eCLIP36.62■■■■□ 3.45
R3HDM4-204ENST00000589428 POLA1P09884 1462 aaPredicted RBP36.61■■■■□ 3.45
R3HDM4-204ENST00000589428 IFT140Q96RY7 1462 aa36.6■■■■□ 3.45
R3HDM4-204ENST00000589428 FGD5Q6ZNL6 1462 aa36.57■■■■□ 3.44
R3HDM4-204ENST00000589428 TOP2BQ02880 1626 aa36.51■■■■□ 3.43
R3HDM4-204ENST00000589428 BIVM-ERCC5R4GMW8 1640 aa36.51■■■■□ 3.43
R3HDM4-204ENST00000589428 SYNJ1O43426 1573 aa36.5■■■■□ 3.43
R3HDM4-204ENST00000589428 TARBP1Q13395 1621 aaKnown RBP36.46■■■■□ 3.43
R3HDM4-204ENST00000589428 SOGA1O94964 1423 aa36.45■■■■□ 3.43
R3HDM4-204ENST00000589428 RAD54L2Q9Y4B4 1467 aa36.42■■■■□ 3.42
R3HDM4-204ENST00000589428 ZNF608Q9ULD9 1512 aaPredicted RBP36.38■■■■□ 3.41
R3HDM4-204ENST00000589428 EIF4G3O43432 1585 aaKnown RBP36.3■■■■□ 3.4
R3HDM4-204ENST00000589428 WDR97A6NE52 1622 aa36.26■■■■□ 3.39
R3HDM4-204ENST00000589428 ABCA10Q8WWZ4 1543 aa36.22■■■■□ 3.39
R3HDM4-204ENST00000589428 AQRO60306 1485 aaKnown RBP eCLIP36.21■■■■□ 3.391e-7■■■■■ 33.5
R3HDM4-204ENST00000589428 TDRD9Q8NDG6 1382 aaKnown RBP36.19■■■■□ 3.38
R3HDM4-204ENST00000589428 ABCA5Q8WWZ7 1642 aa36.07■■■■□ 3.36
R3HDM4-204ENST00000589428 GAPVD1Q14C86 1478 aa36.05■■■■□ 3.36
R3HDM4-204ENST00000589428 GRIN2BQ13224 1484 aa36.01■■■■□ 3.35
R3HDM4-204ENST00000589428 PBRM1Q86U86 1689 aa35.98■■■■□ 3.35
R3HDM4-204ENST00000589428 TRIM41Q8WV44 630 aa35.97■■■■□ 3.35
R3HDM4-204ENST00000589428 CHIC1Q5VXU3 224 aa35.96■■■■□ 3.35
R3HDM4-204ENST00000589428 SNAPC4Q5SXM2 1469 aa35.93■■■■□ 3.34
R3HDM4-204ENST00000589428 MAGI1Q96QZ7 1491 aaPredicted RBP35.89■■■■□ 3.34
R3HDM4-204ENST00000589428 KIF27Q86VH2 1401 aa35.84■■■■□ 3.33
R3HDM4-204ENST00000589428 ERICH3Q5RHP9 1530 aa35.81■■■■□ 3.32
R3HDM4-204ENST00000589428 CHD1O14646 1710 aa35.77■■■■□ 3.32
R3HDM4-204ENST00000589428 FBLN2P98095 1184 aa35.75■■■■□ 3.31
R3HDM4-204ENST00000589428 SYNJ2O15056 1496 aa35.75■■■■□ 3.31
R3HDM4-204ENST00000589428 ADAMTS12P58397 1594 aa35.72■■■■□ 3.31
R3HDM4-204ENST00000589428 OSCARQ8IYS5 282 aa35.71■■■■□ 3.31
R3HDM4-204ENST00000589428 CHMP7Q8WUX9 453 aaPredicted RBP35.7■■■■□ 3.31
R3HDM4-204ENST00000589428 DNAJC5Q9H3Z4 198 aa35.65■■■■□ 3.3
R3HDM4-204ENST00000589428 FHAD1B1AJZ9 1412 aa35.65■■■■□ 3.3
R3HDM4-204ENST00000589428 IGF1RP08069 1367 aa35.6■■■■□ 3.29
R3HDM4-204ENST00000589428 CUL7Q14999 1698 aa35.57■■■■□ 3.29
R3HDM4-204ENST00000589428 GRIN2AQ12879 1464 aa35.55■■■■□ 3.28
R3HDM4-204ENST00000589428 RUSC2Q8N2Y8 1516 aa35.55■■■■□ 3.28
R3HDM4-204ENST00000589428 CARMIL1Q5VZK9 1371 aa35.43■■■■□ 3.26
R3HDM4-204ENST00000589428 CLASP1Q7Z460 1538 aa35.37■■■■□ 3.25
R3HDM4-204ENST00000589428 EEA1Q15075 1411 aa35.37■■■■□ 3.25
R3HDM4-204ENST00000589428 NUP160Q12769 1436 aa35.36■■■■□ 3.25
R3HDM4-204ENST00000589428 CEP170Q5SW79 1584 aa35.35■■■■□ 3.25
R3HDM4-204ENST00000589428 RAPGEF2Q9Y4G8 1499 aa35.27■■■■□ 3.24
R3HDM4-204ENST00000589428 CSRNP3Q8WYN3 585 aa35.23■■■■□ 3.23
R3HDM4-204ENST00000589428 PRXQ9BXM0 1461 aa35.2■■■■□ 3.23
R3HDM4-204ENST00000589428 FAM9AQ8IZU1 332 aaPredicted RBP35.2■■■■□ 3.23
R3HDM4-204ENST00000589428 ARHGEF11O15085 1522 aa35.16■■■■□ 3.22
R3HDM4-204ENST00000589428 RIMBP3CA6NJZ7 1639 aa35.12■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms