Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LSM4Q9Y4Z0 AC011484.1-201ENST00000377652 1995 ntBASIC16.27■□□□□ 0.19
LSM4Q9Y4Z0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 KRT19P1-201ENST00000405746 1186 ntBASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LSM4Q9Y4Z0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 AC104771.1-201ENST00000603335 964 ntBASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LSM4Q9Y4Z0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 RNF165-205ENST00000588679 2904 ntBASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LSM4Q9Y4Z0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LSM4Q9Y4Z0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LSM4Q9Y4Z0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
LSM4Q9Y4Z0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.23■□□□□ 0.19
LSM4Q9Y4Z0 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.23■□□□□ 0.19
LSM4Q9Y4Z0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms