RNA–Protein interactions for RNA: ENST00000354241.5

TRIM4-202, Transcript of tripartite motif containing 4, humanhuman

TSL 1 (best) BASIC

Gene TRIM4, Length 1,942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-202ENST00000354241 NISCHQ9Y2I1 1504 aa46.79■■■■■ 5.08
TRIM4-202ENST00000354241 CCDC180Q9P1Z9 1646 aa40.88■■■■■ 4.14
TRIM4-202ENST00000354241 ZCCHC6Q5VYS8 1495 aaKnown RBP39.28■■■■□ 3.88
TRIM4-202ENST00000354241 ABCC9O60706 1549 aa38.8■■■■□ 3.8
TRIM4-202ENST00000354241 DCAF8L2P0C7V8 631 aa38.76■■■■□ 3.8
TRIM4-202ENST00000354241 DCAF1Q9Y4B6 1507 aa38.65■■■■□ 3.78
TRIM4-202ENST00000354241 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
TRIM4-202ENST00000354241 SHROOM4Q9ULL8 1493 aa38.16■■■■□ 3.7
TRIM4-202ENST00000354241 NACADO15069 1562 aa38.08■■■■□ 3.69
TRIM4-202ENST00000354241 RB1CC1Q8TDY2 1594 aa37.82■■■■□ 3.64
TRIM4-202ENST00000354241 SCRIBQ14160 1630 aa37.63■■■■□ 3.61
TRIM4-202ENST00000354241 UNC13AQ9UPW8 1703 aa37.11■■■■□ 3.53
TRIM4-202ENST00000354241 BICRAQ9NZM4 1560 aa36.66■■■■□ 3.46
TRIM4-202ENST00000354241 SUPT5HO00267 1087 aaKnown RBP36.64■■■■□ 3.46
TRIM4-202ENST00000354241 PABPN1Q86U42 306 aaKnown RBP eCLIP36.56■■■■□ 3.44
TRIM4-202ENST00000354241 CECR2Q9BXF3 1484 aa36.38■■■■□ 3.42
TRIM4-202ENST00000354241 RSF1Q96T23 1441 aaPredicted RBP36.24■■■■□ 3.39
TRIM4-202ENST00000354241 MROH2BQ7Z745 1585 aa36.17■■■■□ 3.38
TRIM4-202ENST00000354241 BAZ1AQ9NRL2 1556 aaPredicted RBP36.15■■■■□ 3.38
TRIM4-202ENST00000354241 SMARCA4P51532 1647 aa36.02■■■■□ 3.36
TRIM4-202ENST00000354241 WIZO95785 1651 aa35.9■■■■□ 3.34
TRIM4-202ENST00000354241 EIF4G1Q04637 1599 aaKnown RBP35.58■■■■□ 3.29
TRIM4-202ENST00000354241 PEG3Q9GZU2 1588 aa35.54■■■■□ 3.28
TRIM4-202ENST00000354241 TOP2AP11388 1531 aaKnown RBP35.49■■■■□ 3.27
TRIM4-202ENST00000354241 ATAD2BQ9ULI0 1458 aa35.43■■■■□ 3.26
TRIM4-202ENST00000354241 SMARCA2P51531 1590 aa35.43■■■■□ 3.26
TRIM4-202ENST00000354241 BAZ1BQ9UIG0 1483 aaKnown RBP35.26■■■■□ 3.23
TRIM4-202ENST00000354241 CCDC88BA6NC98 1476 aa35.12■■■■□ 3.21
TRIM4-202ENST00000354241 NCAPD3P42695 1498 aa35.12■■■■□ 3.21
TRIM4-202ENST00000354241 CC2D2AQ9P2K1 1620 aa35.1■■■■□ 3.21
TRIM4-202ENST00000354241 HMGXB3Q12766 1538 aa35.09■■■■□ 3.21
TRIM4-202ENST00000354241 CHIC1Q5VXU3 224 aa34.96■■■■□ 3.19
TRIM4-202ENST00000354241 TRIM41Q8WV44 630 aa34.43■■■■□ 3.1
TRIM4-202ENST00000354241 ABCC8Q09428 1581 aa34.39■■■■□ 3.1
TRIM4-202ENST00000354241 CFTRP13569 1480 aa34.32■■■■□ 3.09
TRIM4-202ENST00000354241 DNAJC5BQ9UF47 199 aa34.28■■■■□ 3.08
TRIM4-202ENST00000354241 PRDM2Q13029 1718 aa34.23■■■■□ 3.07
TRIM4-202ENST00000354241 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
TRIM4-202ENST00000354241 WRNQ14191 1432 aaPredicted RBP eCLIP34.13■■■■□ 3.05
TRIM4-202ENST00000354241 SYNJ1O43426 1573 aa34.03■■■■□ 3.04
TRIM4-202ENST00000354241 NESP48681 1621 aa34.02■■■■□ 3.04
TRIM4-202ENST00000354241 LAMC3Q9Y6N6 1575 aa33.99■■■■□ 3.03
TRIM4-202ENST00000354241 FANCD2Q9BXW9 1451 aa33.89■■■■□ 3.02
TRIM4-202ENST00000354241 TOP2BQ02880 1626 aa33.88■■■■□ 3.01
TRIM4-202ENST00000354241 BIVM-ERCC5R4GMW8 1640 aa33.86■■■■□ 3.01
TRIM4-202ENST00000354241 FAM9AQ8IZU1 332 aaPredicted RBP33.85■■■■□ 3.01
TRIM4-202ENST00000354241 CUX1P39880 1505 aa33.82■■■■□ 3.01
TRIM4-202ENST00000354241 PDS5BQ9NTI5 1447 aa33.72■■■□□ 2.99
TRIM4-202ENST00000354241 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
TRIM4-202ENST00000354241 SOGA1O94964 1423 aa33.68■■■□□ 2.98
TRIM4-202ENST00000354241 KIF21AQ7Z4S6 1674 aa33.65■■■□□ 2.98
TRIM4-202ENST00000354241 LOC105371045A0A1W2PR82 267 aa33.65■■■□□ 2.98
TRIM4-202ENST00000354241 RUSC2Q8N2Y8 1516 aa33.57■■■□□ 2.97
TRIM4-202ENST00000354241 DNMBPQ6XZF7 1577 aa33.56■■■□□ 2.96
TRIM4-202ENST00000354241 EEA1Q15075 1411 aa33.55■■■□□ 2.96
TRIM4-202ENST00000354241 TOPBP1Q92547 1522 aa33.5■■■□□ 2.95
TRIM4-202ENST00000354241 FGD5Q6ZNL6 1462 aa33.48■■■□□ 2.95
TRIM4-202ENST00000354241 URB2Q14146 1524 aaKnown RBP33.47■■■□□ 2.95
TRIM4-202ENST00000354241 EHMT2Q96KQ7 1210 aa33.42■■■□□ 2.94
TRIM4-202ENST00000354241 CSRNP3Q8WYN3 585 aa33.4■■■□□ 2.94
TRIM4-202ENST00000354241 POLA1P09884 1462 aaPredicted RBP33.33■■■□□ 2.93
TRIM4-202ENST00000354241 MRC2Q9UBG0 1479 aa33.32■■■□□ 2.92
TRIM4-202ENST00000354241 ERCC6Q03468 1493 aa33.29■■■□□ 2.92
TRIM4-202ENST00000354241 KIF27Q86VH2 1401 aa33.28■■■□□ 2.92
TRIM4-202ENST00000354241 CUX2O14529 1486 aa33.25■■■□□ 2.91
TRIM4-202ENST00000354241 RAD54L2Q9Y4B4 1467 aa33.24■■■□□ 2.91
TRIM4-202ENST00000354241 KIF21BO75037 1637 aa33.17■■■□□ 2.9
TRIM4-202ENST00000354241 ABCA10Q8WWZ4 1543 aa33.15■■■□□ 2.9
TRIM4-202ENST00000354241 WDR62O43379 1518 aa33.13■■■□□ 2.89
TRIM4-202ENST00000354241 GOLGA3Q08378 1498 aa33.13■■■□□ 2.89
TRIM4-202ENST00000354241 WDR97A6NE52 1622 aa33.1■■■□□ 2.89
TRIM4-202ENST00000354241 THOC2Q8NI27 1593 aaKnown RBP33.09■■■□□ 2.89
TRIM4-202ENST00000354241 TARBP1Q13395 1621 aaKnown RBP33.02■■■□□ 2.88
TRIM4-202ENST00000354241 UBTFP17480 764 aaKnown RBP33.01■■■□□ 2.88
TRIM4-202ENST00000354241 RAPGEF2Q9Y4G8 1499 aa33.01■■■□□ 2.87
TRIM4-202ENST00000354241 PRXQ9BXM0 1461 aa33■■■□□ 2.87
TRIM4-202ENST00000354241 IGF1RP08069 1367 aa32.97■■■□□ 2.87
TRIM4-202ENST00000354241 TNIKQ9UKE5 1360 aa32.97■■■□□ 2.87
TRIM4-202ENST00000354241 ERICH3Q5RHP9 1530 aa32.95■■■□□ 2.87
TRIM4-202ENST00000354241 ABCA5Q8WWZ7 1642 aa32.92■■■□□ 2.86
TRIM4-202ENST00000354241 TDRD9Q8NDG6 1382 aaKnown RBP32.91■■■□□ 2.86
TRIM4-202ENST00000354241 IFT140Q96RY7 1462 aa32.87■■■□□ 2.85
TRIM4-202ENST00000354241 GAPVD1Q14C86 1478 aa32.85■■■□□ 2.85
TRIM4-202ENST00000354241 CARMIL1Q5VZK9 1371 aa32.83■■■□□ 2.85
TRIM4-202ENST00000354241 CEP162Q5TB80 1403 aa32.81■■■□□ 2.84
TRIM4-202ENST00000354241 CUL7Q14999 1698 aa32.79■■■□□ 2.84
TRIM4-202ENST00000354241 PBRM1Q86U86 1689 aa32.74■■■□□ 2.83
TRIM4-202ENST00000354241 AQRO60306 1485 aaKnown RBP eCLIP32.73■■■□□ 2.839e-7■■■■□ 26.7
TRIM4-202ENST00000354241 ZNF608Q9ULD9 1512 aaPredicted RBP32.72■■■□□ 2.83
TRIM4-202ENST00000354241 EIF4G3O43432 1585 aaKnown RBP32.63■■■□□ 2.81
TRIM4-202ENST00000354241 GRIN2BQ13224 1484 aa32.61■■■□□ 2.81
TRIM4-202ENST00000354241 CLIP1P30622 1438 aa32.59■■■□□ 2.81
TRIM4-202ENST00000354241 RANGAP1P46060 587 aaPredicted RBP32.57■■■□□ 2.8
TRIM4-202ENST00000354241 ADAMTS12P58397 1594 aa32.51■■■□□ 2.8
TRIM4-202ENST00000354241 FHAD1B1AJZ9 1412 aa32.48■■■□□ 2.79
TRIM4-202ENST00000354241 CTTNBP2Q8WZ74 1663 aa32.45■■■□□ 2.78
TRIM4-202ENST00000354241 SNAPC4Q5SXM2 1469 aa32.43■■■□□ 2.78
TRIM4-202ENST00000354241 MAGI1Q96QZ7 1491 aaPredicted RBP32.34■■■□□ 2.77
TRIM4-202ENST00000354241 ARHGAP35Q9NRY4 1499 aa32.3■■■□□ 2.76
TRIM4-202ENST00000354241 ARAP1Q96P48 1450 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms