RNA–Protein interactions for RNA: ENST00000354241.5

TRIM4-202, Transcript of tripartite motif containing 4, humanhuman

TSL 1 (best) BASIC

Gene TRIM4, Length 1,942 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-202ENST00000354241 NISCHQ9Y2I1 1504 aa46.79■■■■■ 5.08
TRIM4-202ENST00000354241 CCDC180Q9P1Z9 1646 aa40.88■■■■■ 4.14
TRIM4-202ENST00000354241 ZCCHC6Q5VYS8 1495 aaKnown RBP39.28■■■■□ 3.88
TRIM4-202ENST00000354241 ABCC9O60706 1549 aa38.8■■■■□ 3.8
TRIM4-202ENST00000354241 DCAF8L2P0C7V8 631 aa38.76■■■■□ 3.8
TRIM4-202ENST00000354241 DCAF1Q9Y4B6 1507 aa38.65■■■■□ 3.78
TRIM4-202ENST00000354241 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
TRIM4-202ENST00000354241 SHROOM4Q9ULL8 1493 aa38.16■■■■□ 3.7
TRIM4-202ENST00000354241 NACADO15069 1562 aa38.08■■■■□ 3.69
TRIM4-202ENST00000354241 RB1CC1Q8TDY2 1594 aa37.82■■■■□ 3.64
TRIM4-202ENST00000354241 SCRIBQ14160 1630 aa37.63■■■■□ 3.61
TRIM4-202ENST00000354241 UNC13AQ9UPW8 1703 aa37.11■■■■□ 3.53
TRIM4-202ENST00000354241 BICRAQ9NZM4 1560 aa36.66■■■■□ 3.46
TRIM4-202ENST00000354241 SUPT5HO00267 1087 aaKnown RBP36.64■■■■□ 3.46
TRIM4-202ENST00000354241 PABPN1Q86U42 306 aaKnown RBP eCLIP36.56■■■■□ 3.44
TRIM4-202ENST00000354241 CECR2Q9BXF3 1484 aa36.38■■■■□ 3.42
TRIM4-202ENST00000354241 RSF1Q96T23 1441 aaPredicted RBP36.24■■■■□ 3.39
TRIM4-202ENST00000354241 MROH2BQ7Z745 1585 aa36.17■■■■□ 3.38
TRIM4-202ENST00000354241 BAZ1AQ9NRL2 1556 aaPredicted RBP36.15■■■■□ 3.38
TRIM4-202ENST00000354241 SMARCA4P51532 1647 aa36.02■■■■□ 3.36
TRIM4-202ENST00000354241 WIZO95785 1651 aa35.9■■■■□ 3.34
TRIM4-202ENST00000354241 EIF4G1Q04637 1599 aaKnown RBP35.58■■■■□ 3.29
TRIM4-202ENST00000354241 PEG3Q9GZU2 1588 aa35.54■■■■□ 3.28
TRIM4-202ENST00000354241 TOP2AP11388 1531 aaKnown RBP35.49■■■■□ 3.27
TRIM4-202ENST00000354241 ATAD2BQ9ULI0 1458 aa35.43■■■■□ 3.26
TRIM4-202ENST00000354241 SMARCA2P51531 1590 aa35.43■■■■□ 3.26
TRIM4-202ENST00000354241 BAZ1BQ9UIG0 1483 aaKnown RBP35.26■■■■□ 3.23
TRIM4-202ENST00000354241 CCDC88BA6NC98 1476 aa35.12■■■■□ 3.21
TRIM4-202ENST00000354241 NCAPD3P42695 1498 aa35.12■■■■□ 3.21
TRIM4-202ENST00000354241 CC2D2AQ9P2K1 1620 aa35.1■■■■□ 3.21
TRIM4-202ENST00000354241 HMGXB3Q12766 1538 aa35.09■■■■□ 3.21
TRIM4-202ENST00000354241 CHIC1Q5VXU3 224 aa34.96■■■■□ 3.19
TRIM4-202ENST00000354241 TRIM41Q8WV44 630 aa34.43■■■■□ 3.1
TRIM4-202ENST00000354241 ABCC8Q09428 1581 aa34.39■■■■□ 3.1
TRIM4-202ENST00000354241 CFTRP13569 1480 aa34.32■■■■□ 3.09
TRIM4-202ENST00000354241 DNAJC5BQ9UF47 199 aa34.28■■■■□ 3.08
TRIM4-202ENST00000354241 PRDM2Q13029 1718 aa34.23■■■■□ 3.07
TRIM4-202ENST00000354241 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
TRIM4-202ENST00000354241 WRNQ14191 1432 aaPredicted RBP eCLIP34.13■■■■□ 3.05
TRIM4-202ENST00000354241 SYNJ1O43426 1573 aa34.03■■■■□ 3.04
TRIM4-202ENST00000354241 NESP48681 1621 aa34.02■■■■□ 3.04
TRIM4-202ENST00000354241 LAMC3Q9Y6N6 1575 aa33.99■■■■□ 3.03
TRIM4-202ENST00000354241 FANCD2Q9BXW9 1451 aa33.89■■■■□ 3.02
TRIM4-202ENST00000354241 TOP2BQ02880 1626 aa33.88■■■■□ 3.01
TRIM4-202ENST00000354241 BIVM-ERCC5R4GMW8 1640 aa33.86■■■■□ 3.01
TRIM4-202ENST00000354241 FAM9AQ8IZU1 332 aaPredicted RBP33.85■■■■□ 3.01
TRIM4-202ENST00000354241 CUX1P39880 1505 aa33.82■■■■□ 3.01
TRIM4-202ENST00000354241 PDS5BQ9NTI5 1447 aa33.72■■■□□ 2.99
TRIM4-202ENST00000354241 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
TRIM4-202ENST00000354241 SOGA1O94964 1423 aa33.68■■■□□ 2.98
TRIM4-202ENST00000354241 KIF21AQ7Z4S6 1674 aa33.65■■■□□ 2.98
TRIM4-202ENST00000354241 LOC105371045A0A1W2PR82 267 aa33.65■■■□□ 2.98
TRIM4-202ENST00000354241 RUSC2Q8N2Y8 1516 aa33.57■■■□□ 2.97
TRIM4-202ENST00000354241 DNMBPQ6XZF7 1577 aa33.56■■■□□ 2.96
TRIM4-202ENST00000354241 EEA1Q15075 1411 aa33.55■■■□□ 2.96
TRIM4-202ENST00000354241 TOPBP1Q92547 1522 aa33.5■■■□□ 2.95
TRIM4-202ENST00000354241 FGD5Q6ZNL6 1462 aa33.48■■■□□ 2.95
TRIM4-202ENST00000354241 URB2Q14146 1524 aaKnown RBP33.47■■■□□ 2.95
TRIM4-202ENST00000354241 EHMT2Q96KQ7 1210 aa33.42■■■□□ 2.94
TRIM4-202ENST00000354241 CSRNP3Q8WYN3 585 aa33.4■■■□□ 2.94
TRIM4-202ENST00000354241 POLA1P09884 1462 aaPredicted RBP33.33■■■□□ 2.93
TRIM4-202ENST00000354241 MRC2Q9UBG0 1479 aa33.32■■■□□ 2.92
TRIM4-202ENST00000354241 ERCC6Q03468 1493 aa33.29■■■□□ 2.92
TRIM4-202ENST00000354241 KIF27Q86VH2 1401 aa33.28■■■□□ 2.92
TRIM4-202ENST00000354241 CUX2O14529 1486 aa33.25■■■□□ 2.91
TRIM4-202ENST00000354241 RAD54L2Q9Y4B4 1467 aa33.24■■■□□ 2.91
TRIM4-202ENST00000354241 KIF21BO75037 1637 aa33.17■■■□□ 2.9
TRIM4-202ENST00000354241 ABCA10Q8WWZ4 1543 aa33.15■■■□□ 2.9
TRIM4-202ENST00000354241 WDR62O43379 1518 aa33.13■■■□□ 2.89
TRIM4-202ENST00000354241 GOLGA3Q08378 1498 aa33.13■■■□□ 2.89
TRIM4-202ENST00000354241 WDR97A6NE52 1622 aa33.1■■■□□ 2.89
TRIM4-202ENST00000354241 THOC2Q8NI27 1593 aaKnown RBP33.09■■■□□ 2.89
TRIM4-202ENST00000354241 TARBP1Q13395 1621 aaKnown RBP33.02■■■□□ 2.88
TRIM4-202ENST00000354241 UBTFP17480 764 aaKnown RBP33.01■■■□□ 2.88
TRIM4-202ENST00000354241 RAPGEF2Q9Y4G8 1499 aa33.01■■■□□ 2.87
TRIM4-202ENST00000354241 PRXQ9BXM0 1461 aa33■■■□□ 2.87
TRIM4-202ENST00000354241 IGF1RP08069 1367 aa32.97■■■□□ 2.87
TRIM4-202ENST00000354241 TNIKQ9UKE5 1360 aa32.97■■■□□ 2.87
TRIM4-202ENST00000354241 ERICH3Q5RHP9 1530 aa32.95■■■□□ 2.87
TRIM4-202ENST00000354241 ABCA5Q8WWZ7 1642 aa32.92■■■□□ 2.86
TRIM4-202ENST00000354241 TDRD9Q8NDG6 1382 aaKnown RBP32.91■■■□□ 2.86
TRIM4-202ENST00000354241 IFT140Q96RY7 1462 aa32.87■■■□□ 2.85
TRIM4-202ENST00000354241 GAPVD1Q14C86 1478 aa32.85■■■□□ 2.85
TRIM4-202ENST00000354241 CARMIL1Q5VZK9 1371 aa32.83■■■□□ 2.85
TRIM4-202ENST00000354241 CEP162Q5TB80 1403 aa32.81■■■□□ 2.84
TRIM4-202ENST00000354241 CUL7Q14999 1698 aa32.79■■■□□ 2.84
TRIM4-202ENST00000354241 PBRM1Q86U86 1689 aa32.74■■■□□ 2.83
TRIM4-202ENST00000354241 AQRO60306 1485 aaKnown RBP eCLIP32.73■■■□□ 2.839e-7■■■■□ 26.7
TRIM4-202ENST00000354241 ZNF608Q9ULD9 1512 aaPredicted RBP32.72■■■□□ 2.83
TRIM4-202ENST00000354241 EIF4G3O43432 1585 aaKnown RBP32.63■■■□□ 2.81
TRIM4-202ENST00000354241 GRIN2BQ13224 1484 aa32.61■■■□□ 2.81
TRIM4-202ENST00000354241 CLIP1P30622 1438 aa32.59■■■□□ 2.81
TRIM4-202ENST00000354241 RANGAP1P46060 587 aaPredicted RBP32.57■■■□□ 2.8
TRIM4-202ENST00000354241 ADAMTS12P58397 1594 aa32.51■■■□□ 2.8
TRIM4-202ENST00000354241 FHAD1B1AJZ9 1412 aa32.48■■■□□ 2.79
TRIM4-202ENST00000354241 CTTNBP2Q8WZ74 1663 aa32.45■■■□□ 2.78
TRIM4-202ENST00000354241 SNAPC4Q5SXM2 1469 aa32.43■■■□□ 2.78
TRIM4-202ENST00000354241 MAGI1Q96QZ7 1491 aaPredicted RBP32.34■■■□□ 2.77
TRIM4-202ENST00000354241 ARHGAP35Q9NRY4 1499 aa32.3■■■□□ 2.76
TRIM4-202ENST00000354241 ARAP1Q96P48 1450 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms