RNA–Protein interactions for RNA: ENST00000321358.11

YBX1-201, Transcript of Y-box binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene YBX1, Length 1,514 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1-201ENST00000321358 NISCHQ9Y2I1 1504 aa49.66■■■■■ 5.54
YBX1-201ENST00000321358 CCDC180Q9P1Z9 1646 aa43.72■■■■■ 4.59
YBX1-201ENST00000321358 ABCC9O60706 1549 aa42.25■■■■■ 4.35
YBX1-201ENST00000321358 ZCCHC6Q5VYS8 1495 aaKnown RBP41.48■■■■■ 4.23
YBX1-201ENST00000321358 DCAF8L2P0C7V8 631 aa41.48■■■■■ 4.23
YBX1-201ENST00000321358 DCAF1Q9Y4B6 1507 aa41.1■■■■■ 4.17
YBX1-201ENST00000321358 NACADO15069 1562 aa41.04■■■■■ 4.16
YBX1-201ENST00000321358 MYO15BQ96JP2 1530 aa41.02■■■■■ 4.16
YBX1-201ENST00000321358 RB1CC1Q8TDY2 1594 aa40.92■■■■■ 4.14
YBX1-201ENST00000321358 SCRIBQ14160 1630 aa40.03■■■■■ 4
YBX1-201ENST00000321358 SHROOM4Q9ULL8 1493 aa39.8■■■■□ 3.96
YBX1-201ENST00000321358 UNC13AQ9UPW8 1703 aa39.75■■■■□ 3.95
YBX1-201ENST00000321358 PABPN1Q86U42 306 aaKnown RBP eCLIP39.7■■■■□ 3.95
YBX1-201ENST00000321358 BICRAQ9NZM4 1560 aa39.54■■■■□ 3.92
YBX1-201ENST00000321358 DNAJC5BQ9UF47 199 aa39.08■■■■□ 3.85
YBX1-201ENST00000321358 CECR2Q9BXF3 1484 aa38.6■■■■□ 3.77
YBX1-201ENST00000321358 EIF4G1Q04637 1599 aaKnown RBP38.52■■■■□ 3.76
YBX1-201ENST00000321358 BAZ1AQ9NRL2 1556 aaPredicted RBP38.46■■■■□ 3.75
YBX1-201ENST00000321358 SMARCA4P51532 1647 aa38.32■■■■□ 3.73
YBX1-201ENST00000321358 MROH2BQ7Z745 1585 aa38.26■■■■□ 3.72
YBX1-201ENST00000321358 CC2D2AQ9P2K1 1620 aa38.19■■■■□ 3.7
YBX1-201ENST00000321358 RSF1Q96T23 1441 aaPredicted RBP38.15■■■■□ 3.7
YBX1-201ENST00000321358 ATAD2BQ9ULI0 1458 aa38.01■■■■□ 3.68
YBX1-201ENST00000321358 SMARCA2P51531 1590 aa38.01■■■■□ 3.68
YBX1-201ENST00000321358 PEG3Q9GZU2 1588 aa37.93■■■■□ 3.66
YBX1-201ENST00000321358 SUPT5HO00267 1087 aaKnown RBP37.9■■■■□ 3.66
YBX1-201ENST00000321358 NCAPD3P42695 1498 aa37.9■■■■□ 3.66
YBX1-201ENST00000321358 WIZO95785 1651 aa37.84■■■■□ 3.65
YBX1-201ENST00000321358 BAZ1BQ9UIG0 1483 aaKnown RBP37.78■■■■□ 3.64
YBX1-201ENST00000321358 HMGXB3Q12766 1538 aa37.72■■■■□ 3.63
YBX1-201ENST00000321358 TOP2AP11388 1531 aaKnown RBP37.53■■■■□ 3.6
YBX1-201ENST00000321358 CCDC88BA6NC98 1476 aa37.14■■■■□ 3.54
YBX1-201ENST00000321358 CADPSQ9ULU8 1353 aa36.89■■■■□ 3.5
YBX1-201ENST00000321358 CFTRP13569 1480 aa36.76■■■■□ 3.48
YBX1-201ENST00000321358 LAMC3Q9Y6N6 1575 aa36.74■■■■□ 3.47
YBX1-201ENST00000321358 NESP48681 1621 aa36.72■■■■□ 3.47
YBX1-201ENST00000321358 PDS5BQ9NTI5 1447 aa36.6■■■■□ 3.45
YBX1-201ENST00000321358 ERCC6Q03468 1493 aa36.44■■■■□ 3.42
YBX1-201ENST00000321358 FANCD2Q9BXW9 1451 aa36.43■■■■□ 3.42
YBX1-201ENST00000321358 PRDM2Q13029 1718 aa36.32■■■■□ 3.4
YBX1-201ENST00000321358 CEP164Q9UPV0 1460 aa36.32■■■■□ 3.4
YBX1-201ENST00000321358 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
YBX1-201ENST00000321358 CUX2O14529 1486 aa36.14■■■■□ 3.38
YBX1-201ENST00000321358 MRC2Q9UBG0 1479 aa36.09■■■■□ 3.37
YBX1-201ENST00000321358 ABCC8Q09428 1581 aa36■■■■□ 3.35
YBX1-201ENST00000321358 WRNQ14191 1432 aaPredicted RBP eCLIP36■■■■□ 3.35
YBX1-201ENST00000321358 THOC2Q8NI27 1593 aaKnown RBP35.97■■■■□ 3.35
YBX1-201ENST00000321358 URB2Q14146 1524 aaKnown RBP35.95■■■■□ 3.35
YBX1-201ENST00000321358 TOPBP1Q92547 1522 aa35.89■■■■□ 3.34
YBX1-201ENST00000321358 DNMBPQ6XZF7 1577 aa35.88■■■■□ 3.34
YBX1-201ENST00000321358 WDR62O43379 1518 aa35.88■■■■□ 3.33
YBX1-201ENST00000321358 CUX1P39880 1505 aa35.85■■■■□ 3.33
YBX1-201ENST00000321358 TRIM41Q8WV44 630 aa35.78■■■■□ 3.32
YBX1-201ENST00000321358 SYNJ1O43426 1573 aa35.73■■■■□ 3.31
YBX1-201ENST00000321358 TOP2BQ02880 1626 aa35.73■■■■□ 3.31
YBX1-201ENST00000321358 CHIC1Q5VXU3 224 aa35.73■■■■□ 3.31
YBX1-201ENST00000321358 FGD5Q6ZNL6 1462 aa35.66■■■■□ 3.3
YBX1-201ENST00000321358 BIVM-ERCC5R4GMW8 1640 aa35.65■■■■□ 3.3
YBX1-201ENST00000321358 POLA1P09884 1462 aaPredicted RBP35.64■■■■□ 3.3
YBX1-201ENST00000321358 SOGA1O94964 1423 aa35.59■■■■□ 3.29
YBX1-201ENST00000321358 IFT140Q96RY7 1462 aa35.54■■■■□ 3.28
YBX1-201ENST00000321358 RAD54L2Q9Y4B4 1467 aa35.49■■■■□ 3.27
YBX1-201ENST00000321358 DNAJC5Q9H3Z4 198 aa35.42■■■■□ 3.26
YBX1-201ENST00000321358 ABCA10Q8WWZ4 1543 aa35.36■■■■□ 3.25
YBX1-201ENST00000321358 TARBP1Q13395 1621 aaKnown RBP35.35■■■■□ 3.25
YBX1-201ENST00000321358 TDRD9Q8NDG6 1382 aaKnown RBP35.31■■■■□ 3.24
YBX1-201ENST00000321358 ZNF608Q9ULD9 1512 aaPredicted RBP35.25■■■■□ 3.23
YBX1-201ENST00000321358 KIF27Q86VH2 1401 aa35.23■■■■□ 3.23
YBX1-201ENST00000321358 AQRO60306 1485 aaKnown RBP eCLIP35.21■■■■□ 3.239e-9■■■■■ 27.1
YBX1-201ENST00000321358 GAPVD1Q14C86 1478 aa35.16■■■■□ 3.22
YBX1-201ENST00000321358 WDR97A6NE52 1622 aa35.15■■■■□ 3.22
YBX1-201ENST00000321358 EIF4G3O43432 1585 aaKnown RBP35.09■■■■□ 3.21
YBX1-201ENST00000321358 GRIN2BQ13224 1484 aa35.06■■■■□ 3.2
YBX1-201ENST00000321358 ABCA5Q8WWZ7 1642 aa35.04■■■■□ 3.2
YBX1-201ENST00000321358 EEA1Q15075 1411 aa35.03■■■■□ 3.2
YBX1-201ENST00000321358 RUSC2Q8N2Y8 1516 aa35.01■■■■□ 3.19
YBX1-201ENST00000321358 FAM9AQ8IZU1 332 aaPredicted RBP35.01■■■■□ 3.19
YBX1-201ENST00000321358 IGF1RP08069 1367 aa34.96■■■■□ 3.19
YBX1-201ENST00000321358 CSRNP3Q8WYN3 585 aa34.94■■■■□ 3.18
YBX1-201ENST00000321358 ERICH3Q5RHP9 1530 aa34.94■■■■□ 3.18
YBX1-201ENST00000321358 SNAPC4Q5SXM2 1469 aa34.87■■■■□ 3.17
YBX1-201ENST00000321358 MAGI1Q96QZ7 1491 aaPredicted RBP34.87■■■■□ 3.17
YBX1-201ENST00000321358 PBRM1Q86U86 1689 aa34.85■■■■□ 3.17
YBX1-201ENST00000321358 FBLN2P98095 1184 aa34.81■■■■□ 3.16
YBX1-201ENST00000321358 CHMP7Q8WUX9 453 aaPredicted RBP34.81■■■■□ 3.16
YBX1-201ENST00000321358 CARMIL1Q5VZK9 1371 aa34.8■■■■□ 3.16
YBX1-201ENST00000321358 FHAD1B1AJZ9 1412 aa34.79■■■■□ 3.16
YBX1-201ENST00000321358 SYNJ2O15056 1496 aa34.73■■■■□ 3.15
YBX1-201ENST00000321358 CUL7Q14999 1698 aa34.72■■■■□ 3.15
YBX1-201ENST00000321358 ADAMTS12P58397 1594 aa34.69■■■■□ 3.14
YBX1-201ENST00000321358 PRXQ9BXM0 1461 aa34.65■■■■□ 3.14
YBX1-201ENST00000321358 RAPGEF2Q9Y4G8 1499 aa34.64■■■■□ 3.14
YBX1-201ENST00000321358 OSCARQ8IYS5 282 aa34.6■■■■□ 3.13
YBX1-201ENST00000321358 GRIN2AQ12879 1464 aa34.57■■■■□ 3.12
YBX1-201ENST00000321358 EHMT2Q96KQ7 1210 aa34.51■■■■□ 3.12
YBX1-201ENST00000321358 KIF21BO75037 1637 aa34.47■■■■□ 3.11
YBX1-201ENST00000321358 CHD1O14646 1710 aa34.45■■■■□ 3.1
YBX1-201ENST00000321358 UBTFP17480 764 aaKnown RBP34.44■■■■□ 3.1
YBX1-201ENST00000321358 GOLGA3Q08378 1498 aa34.44■■■■□ 3.1
YBX1-201ENST00000321358 NUP160Q12769 1436 aa34.37■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms