RNA–Protein interactions for RNA: ENST00000392597.5

PTPN11-202, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

TSL 1 (best) BASIC

Gene PTPN11, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-202ENST00000392597 NISCHQ9Y2I1 1504 aa44.29■■■■■ 4.68
PTPN11-202ENST00000392597 CCDC180Q9P1Z9 1646 aa38.87■■■■□ 3.81
PTPN11-202ENST00000392597 ABCC9O60706 1549 aa37.35■■■■□ 3.57
PTPN11-202ENST00000392597 ZCCHC6Q5VYS8 1495 aaKnown RBP37.33■■■■□ 3.57
PTPN11-202ENST00000392597 DCAF1Q9Y4B6 1507 aa36.68■■■■□ 3.46
PTPN11-202ENST00000392597 DCAF8L2P0C7V8 631 aa36.44■■■■□ 3.42
PTPN11-202ENST00000392597 MYO15BQ96JP2 1530 aa36.42■■■■□ 3.42
PTPN11-202ENST00000392597 SHROOM4Q9ULL8 1493 aa36.41■■■■□ 3.42
PTPN11-202ENST00000392597 NACADO15069 1562 aa36.39■■■■□ 3.42
PTPN11-202ENST00000392597 RB1CC1Q8TDY2 1594 aa36.25■■■■□ 3.39
PTPN11-202ENST00000392597 SCRIBQ14160 1630 aa35.49■■■■□ 3.27
PTPN11-202ENST00000392597 UNC13AQ9UPW8 1703 aa35.44■■■■□ 3.26
PTPN11-202ENST00000392597 SUPT5HO00267 1087 aaKnown RBP35.3■■■■□ 3.24
PTPN11-202ENST00000392597 BICRAQ9NZM4 1560 aa35.13■■■■□ 3.21
PTPN11-202ENST00000392597 PABPN1Q86U42 306 aaKnown RBP eCLIP34.99■■■■□ 3.19
PTPN11-202ENST00000392597 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
PTPN11-202ENST00000392597 CECR2Q9BXF3 1484 aa34.34■■■■□ 3.09
PTPN11-202ENST00000392597 MROH2BQ7Z745 1585 aa34.22■■■■□ 3.07
PTPN11-202ENST00000392597 BAZ1AQ9NRL2 1556 aaPredicted RBP34.17■■■■□ 3.06
PTPN11-202ENST00000392597 EIF4G1Q04637 1599 aaKnown RBP34.16■■■■□ 3.06
PTPN11-202ENST00000392597 CHIC1Q5VXU3 224 aa34.12■■■■□ 3.05
PTPN11-202ENST00000392597 SMARCA4P51532 1647 aa34.03■■■■□ 3.04
PTPN11-202ENST00000392597 WIZO95785 1651 aa33.97■■■■□ 3.03
PTPN11-202ENST00000392597 CC2D2AQ9P2K1 1620 aa33.84■■■■□ 3.01
PTPN11-202ENST00000392597 PEG3Q9GZU2 1588 aa33.72■■■□□ 2.99
PTPN11-202ENST00000392597 SMARCA2P51531 1590 aa33.68■■■□□ 2.98
PTPN11-202ENST00000392597 ATAD2BQ9ULI0 1458 aa33.67■■■□□ 2.98
PTPN11-202ENST00000392597 TOP2AP11388 1531 aaKnown RBP33.66■■■□□ 2.98
PTPN11-202ENST00000392597 DNAJC5BQ9UF47 199 aa33.65■■■□□ 2.98
PTPN11-202ENST00000392597 NCAPD3P42695 1498 aa33.56■■■□□ 2.96
PTPN11-202ENST00000392597 HMGXB3Q12766 1538 aa33.48■■■□□ 2.95
PTPN11-202ENST00000392597 BAZ1BQ9UIG0 1483 aaKnown RBP33.43■■■□□ 2.94
PTPN11-202ENST00000392597 CCDC88BA6NC98 1476 aa33.3■■■□□ 2.92
PTPN11-202ENST00000392597 TRIM41Q8WV44 630 aa33.19■■■□□ 2.9
PTPN11-202ENST00000392597 LOC105371045A0A1W2PR82 267 aa32.78■■■□□ 2.84
PTPN11-202ENST00000392597 ABCC8Q09428 1581 aa32.75■■■□□ 2.83
PTPN11-202ENST00000392597 CADPSQ9ULU8 1353 aa32.61■■■□□ 2.81
PTPN11-202ENST00000392597 LAMC3Q9Y6N6 1575 aa32.58■■■□□ 2.81
PTPN11-202ENST00000392597 CFTRP13569 1480 aa32.58■■■□□ 2.81
PTPN11-202ENST00000392597 FAM9AQ8IZU1 332 aaPredicted RBP32.54■■■□□ 2.8
PTPN11-202ENST00000392597 NESP48681 1621 aa32.52■■■□□ 2.8
PTPN11-202ENST00000392597 WRNQ14191 1432 aaPredicted RBP eCLIP32.51■■■□□ 2.79
PTPN11-202ENST00000392597 PRDM2Q13029 1718 aa32.39■■■□□ 2.78
PTPN11-202ENST00000392597 EEA1Q15075 1411 aa32.37■■■□□ 2.77
PTPN11-202ENST00000392597 SYNJ1O43426 1573 aa32.35■■■□□ 2.77
PTPN11-202ENST00000392597 PDS5BQ9NTI5 1447 aa32.33■■■□□ 2.77
PTPN11-202ENST00000392597 SOGA1O94964 1423 aa32.25■■■□□ 2.75
PTPN11-202ENST00000392597 FANCD2Q9BXW9 1451 aa32.23■■■□□ 2.75
PTPN11-202ENST00000392597 TOP2BQ02880 1626 aa32.21■■■□□ 2.75
PTPN11-202ENST00000392597 KIF21AQ7Z4S6 1674 aa32.17■■■□□ 2.74
PTPN11-202ENST00000392597 BIVM-ERCC5R4GMW8 1640 aa32.17■■■□□ 2.74
PTPN11-202ENST00000392597 ERCC6Q03468 1493 aa32.16■■■□□ 2.74
PTPN11-202ENST00000392597 CEP164Q9UPV0 1460 aa32.13■■■□□ 2.73
PTPN11-202ENST00000392597 CSRNP3Q8WYN3 585 aa32.08■■■□□ 2.73
PTPN11-202ENST00000392597 RUSC2Q8N2Y8 1516 aa32.08■■■□□ 2.73
PTPN11-202ENST00000392597 EHMT2Q96KQ7 1210 aa32.01■■■□□ 2.72
PTPN11-202ENST00000392597 CUX1P39880 1505 aa31.97■■■□□ 2.71
PTPN11-202ENST00000392597 MRC2Q9UBG0 1479 aa31.95■■■□□ 2.7
PTPN11-202ENST00000392597 THOC2Q8NI27 1593 aaKnown RBP31.92■■■□□ 2.7
PTPN11-202ENST00000392597 TNIKQ9UKE5 1360 aa31.92■■■□□ 2.7
PTPN11-202ENST00000392597 GOLGA3Q08378 1498 aa31.91■■■□□ 2.7
PTPN11-202ENST00000392597 KIF21BO75037 1637 aa31.91■■■□□ 2.7
PTPN11-202ENST00000392597 URB2Q14146 1524 aaKnown RBP31.86■■■□□ 2.69
PTPN11-202ENST00000392597 WDR62O43379 1518 aa31.84■■■□□ 2.69
PTPN11-202ENST00000392597 PCGF6Q9BYE7 350 aa31.84■■■□□ 2.69
PTPN11-202ENST00000392597 DNMBPQ6XZF7 1577 aa31.82■■■□□ 2.68
PTPN11-202ENST00000392597 TOPBP1Q92547 1522 aa31.79■■■□□ 2.68
PTPN11-202ENST00000392597 CEP162Q5TB80 1403 aa31.77■■■□□ 2.68
PTPN11-202ENST00000392597 TRIM26Q12899 539 aaPredicted RBP31.76■■■□□ 2.68
PTPN11-202ENST00000392597 UBTFP17480 764 aaKnown RBP31.69■■■□□ 2.66
PTPN11-202ENST00000392597 KIF27Q86VH2 1401 aa31.65■■■□□ 2.66
PTPN11-202ENST00000392597 CUX2O14529 1486 aa31.61■■■□□ 2.65
PTPN11-202ENST00000392597 ERICH3Q5RHP9 1530 aa31.6■■■□□ 2.65
PTPN11-202ENST00000392597 POLA1P09884 1462 aaPredicted RBP31.58■■■□□ 2.65
PTPN11-202ENST00000392597 FGD5Q6ZNL6 1462 aa31.58■■■□□ 2.65
PTPN11-202ENST00000392597 RAPGEF2Q9Y4G8 1499 aa31.58■■■□□ 2.65
PTPN11-202ENST00000392597 PRXQ9BXM0 1461 aa31.58■■■□□ 2.65
PTPN11-202ENST00000392597 IFT140Q96RY7 1462 aa31.44■■■□□ 2.62
PTPN11-202ENST00000392597 TARBP1Q13395 1621 aaKnown RBP31.4■■■□□ 2.62
PTPN11-202ENST00000392597 HRCP23327 699 aa31.4■■■□□ 2.62
PTPN11-202ENST00000392597 CLIP1P30622 1438 aa31.4■■■□□ 2.62
PTPN11-202ENST00000392597 RAD54L2Q9Y4B4 1467 aa31.4■■■□□ 2.62
PTPN11-202ENST00000392597 ABCA10Q8WWZ4 1543 aa31.33■■■□□ 2.61
PTPN11-202ENST00000392597 WDR97A6NE52 1622 aa31.31■■■□□ 2.6
PTPN11-202ENST00000392597 IGF1RP08069 1367 aa31.31■■■□□ 2.6
PTPN11-202ENST00000392597 VPS8Q8N3P4 1428 aa31.22■■■□□ 2.59
PTPN11-202ENST00000392597 ZNF608Q9ULD9 1512 aaPredicted RBP31.21■■■□□ 2.59
PTPN11-202ENST00000392597 TDRD9Q8NDG6 1382 aaKnown RBP31.16■■■□□ 2.58
PTPN11-202ENST00000392597 CARMIL1Q5VZK9 1371 aa31.16■■■□□ 2.58
PTPN11-202ENST00000392597 EIF4G3O43432 1585 aaKnown RBP31.15■■■□□ 2.58
PTPN11-202ENST00000392597 PPARGC1BQ86YN6 1023 aaKnown RBP31.15■■■□□ 2.58
PTPN11-202ENST00000392597 ABCA5Q8WWZ7 1642 aa31.15■■■□□ 2.58
PTPN11-202ENST00000392597 AQRO60306 1485 aaKnown RBP eCLIP31.12■■■□□ 2.573e-6■■■■□ 22.1
PTPN11-202ENST00000392597 GAPVD1Q14C86 1478 aa31.1■■■□□ 2.57
PTPN11-202ENST00000392597 CUL7Q14999 1698 aa31.06■■■□□ 2.56
PTPN11-202ENST00000392597 ARAP1Q96P48 1450 aa31.03■■■□□ 2.56
PTPN11-202ENST00000392597 GRIN2BQ13224 1484 aa31■■■□□ 2.55
PTPN11-202ENST00000392597 PBRM1Q86U86 1689 aa30.99■■■□□ 2.55
PTPN11-202ENST00000392597 RANGAP1P46060 587 aaPredicted RBP30.94■■■□□ 2.54
PTPN11-202ENST00000392597 ARHGAP35Q9NRY4 1499 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms