RNA–Protein interactions for RNA: ENST00000394729.6

PRKCD-202, Transcript of protein kinase C delta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRKCD, Length 2,810 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCD-202ENST00000394729 NISCHQ9Y2I1 1504 aa44.46■■■■■ 4.71
PRKCD-202ENST00000394729 CCDC180Q9P1Z9 1646 aa38.06■■■■□ 3.68
PRKCD-202ENST00000394729 DCAF8L2P0C7V8 631 aa37.99■■■■□ 3.67
PRKCD-202ENST00000394729 SHROOM4Q9ULL8 1493 aa37.75■■■■□ 3.63
PRKCD-202ENST00000394729 ZCCHC6Q5VYS8 1495 aaKnown RBP37.32■■■■□ 3.57
PRKCD-202ENST00000394729 ABCC9O60706 1549 aa36.82■■■■□ 3.49
PRKCD-202ENST00000394729 SUPT5HO00267 1087 aaKnown RBP36.5■■■■□ 3.43
PRKCD-202ENST00000394729 DCAF1Q9Y4B6 1507 aa36.18■■■■□ 3.38
PRKCD-202ENST00000394729 SCRIBQ14160 1630 aa35.96■■■■□ 3.35
PRKCD-202ENST00000394729 NACADO15069 1562 aa35.57■■■■□ 3.28
PRKCD-202ENST00000394729 MYO15BQ96JP2 1530 aa35.49■■■■□ 3.27
PRKCD-202ENST00000394729 RB1CC1Q8TDY2 1594 aa35.33■■■■□ 3.25
PRKCD-202ENST00000394729 PABPN1Q86U42 306 aaKnown RBP eCLIP35.17■■■■□ 3.22
PRKCD-202ENST00000394729 CECR2Q9BXF3 1484 aa34.98■■■■□ 3.19
PRKCD-202ENST00000394729 RSF1Q96T23 1441 aaPredicted RBP34.86■■■■□ 3.17
PRKCD-202ENST00000394729 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
PRKCD-202ENST00000394729 MROH2BQ7Z745 1585 aa34.64■■■■□ 3.14
PRKCD-202ENST00000394729 CHIC1Q5VXU3 224 aa34.62■■■■□ 3.13
PRKCD-202ENST00000394729 WIZO95785 1651 aa34.41■■■■□ 3.1
PRKCD-202ENST00000394729 BICRAQ9NZM4 1560 aa34.39■■■■□ 3.1
PRKCD-202ENST00000394729 BAZ1AQ9NRL2 1556 aaPredicted RBP34.21■■■■□ 3.07
PRKCD-202ENST00000394729 SMARCA4P51532 1647 aa34.08■■■■□ 3.05
PRKCD-202ENST00000394729 TRIM41Q8WV44 630 aa33.89■■■■□ 3.02
PRKCD-202ENST00000394729 EHMT2Q96KQ7 1210 aa33.89■■■■□ 3.02
PRKCD-202ENST00000394729 FAM9AQ8IZU1 332 aaPredicted RBP33.88■■■■□ 3.01
PRKCD-202ENST00000394729 LOC105371045A0A1W2PR82 267 aa33.81■■■■□ 3
PRKCD-202ENST00000394729 TOP2AP11388 1531 aaKnown RBP33.67■■■□□ 2.98
PRKCD-202ENST00000394729 CCDC88BA6NC98 1476 aa33.67■■■□□ 2.98
PRKCD-202ENST00000394729 ATAD2BQ9ULI0 1458 aa33.55■■■□□ 2.96
PRKCD-202ENST00000394729 SMARCA2P51531 1590 aa33.51■■■□□ 2.95
PRKCD-202ENST00000394729 BAZ1BQ9UIG0 1483 aaKnown RBP33.47■■■□□ 2.95
PRKCD-202ENST00000394729 EIF4G1Q04637 1599 aaKnown RBP33.4■■■□□ 2.94
PRKCD-202ENST00000394729 ABCC8Q09428 1581 aa33.36■■■□□ 2.93
PRKCD-202ENST00000394729 PEG3Q9GZU2 1588 aa33.26■■■□□ 2.91
PRKCD-202ENST00000394729 NCAPD3P42695 1498 aa32.98■■■□□ 2.87
PRKCD-202ENST00000394729 CC2D2AQ9P2K1 1620 aa32.92■■■□□ 2.86
PRKCD-202ENST00000394729 SOGA1O94964 1423 aa32.84■■■□□ 2.85
PRKCD-202ENST00000394729 WRNQ14191 1432 aaPredicted RBP eCLIP32.83■■■□□ 2.85
PRKCD-202ENST00000394729 DNAJC5BQ9UF47 199 aa32.83■■■□□ 2.85
PRKCD-202ENST00000394729 HMGXB3Q12766 1538 aa32.8■■■□□ 2.84
PRKCD-202ENST00000394729 RUSC2Q8N2Y8 1516 aa32.76■■■□□ 2.83
PRKCD-202ENST00000394729 PCGF6Q9BYE7 350 aa32.68■■■□□ 2.82
PRKCD-202ENST00000394729 SYNJ1O43426 1573 aa32.66■■■□□ 2.82
PRKCD-202ENST00000394729 PPARGC1BQ86YN6 1023 aaKnown RBP32.63■■■□□ 2.81
PRKCD-202ENST00000394729 RANGAP1P46060 587 aaPredicted RBP32.57■■■□□ 2.8
PRKCD-202ENST00000394729 UBTFP17480 764 aaKnown RBP32.56■■■□□ 2.8
PRKCD-202ENST00000394729 CSRNP3Q8WYN3 585 aa32.53■■■□□ 2.8
PRKCD-202ENST00000394729 CFTRP13569 1480 aa32.46■■■□□ 2.79
PRKCD-202ENST00000394729 TTBK1Q5TCY1 1321 aaPredicted RBP32.43■■■□□ 2.78
PRKCD-202ENST00000394729 CADPSQ9ULU8 1353 aa32.43■■■□□ 2.78
PRKCD-202ENST00000394729 NESP48681 1621 aa32.42■■■□□ 2.78
PRKCD-202ENST00000394729 CUX1P39880 1505 aa32.28■■■□□ 2.76
PRKCD-202ENST00000394729 TOP2BQ02880 1626 aa32.21■■■□□ 2.75
PRKCD-202ENST00000394729 FANCD2Q9BXW9 1451 aa32.14■■■□□ 2.74
PRKCD-202ENST00000394729 EEA1Q15075 1411 aa32.11■■■□□ 2.73
PRKCD-202ENST00000394729 CEP162Q5TB80 1403 aa32.08■■■□□ 2.73
PRKCD-202ENST00000394729 RAPGEF2Q9Y4G8 1499 aa32.04■■■□□ 2.72
PRKCD-202ENST00000394729 BIVM-ERCC5R4GMW8 1640 aa32.02■■■□□ 2.72
PRKCD-202ENST00000394729 GOLGA3Q08378 1498 aa32.02■■■□□ 2.72
PRKCD-202ENST00000394729 TRIM26Q12899 539 aaPredicted RBP32■■■□□ 2.71
PRKCD-202ENST00000394729 TNIKQ9UKE5 1360 aa31.97■■■□□ 2.71
PRKCD-202ENST00000394729 FGD5Q6ZNL6 1462 aa31.95■■■□□ 2.7
PRKCD-202ENST00000394729 CUX2O14529 1486 aa31.94■■■□□ 2.7
PRKCD-202ENST00000394729 CEP164Q9UPV0 1460 aa31.93■■■□□ 2.7
PRKCD-202ENST00000394729 KIF27Q86VH2 1401 aa31.89■■■□□ 2.7
PRKCD-202ENST00000394729 RAD54L2Q9Y4B4 1467 aa31.89■■■□□ 2.7
PRKCD-202ENST00000394729 PRDM2Q13029 1718 aa31.87■■■□□ 2.69
PRKCD-202ENST00000394729 TOPBP1Q92547 1522 aa31.75■■■□□ 2.67
PRKCD-202ENST00000394729 CLIP1P30622 1438 aa31.74■■■□□ 2.67
PRKCD-202ENST00000394729 PDS5BQ9NTI5 1447 aa31.73■■■□□ 2.67
PRKCD-202ENST00000394729 KIF21BO75037 1637 aa31.72■■■□□ 2.67
PRKCD-202ENST00000394729 LAMC3Q9Y6N6 1575 aa31.72■■■□□ 2.67
PRKCD-202ENST00000394729 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.67
PRKCD-202ENST00000394729 POLA1P09884 1462 aaPredicted RBP31.7■■■□□ 2.66
PRKCD-202ENST00000394729 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
PRKCD-202ENST00000394729 IGF1RP08069 1367 aa31.68■■■□□ 2.66
PRKCD-202ENST00000394729 PRXQ9BXM0 1461 aa31.64■■■□□ 2.66
PRKCD-202ENST00000394729 KIF21AQ7Z4S6 1674 aa31.64■■■□□ 2.66
PRKCD-202ENST00000394729 DNMBPQ6XZF7 1577 aa31.63■■■□□ 2.65
PRKCD-202ENST00000394729 P3H3Q8IVL6 736 aa31.58■■■□□ 2.65
PRKCD-202ENST00000394729 CARMIL1Q5VZK9 1371 aa31.58■■■□□ 2.65
PRKCD-202ENST00000394729 HRCP23327 699 aa31.57■■■□□ 2.64
PRKCD-202ENST00000394729 APLP2Q06481 763 aa31.49■■■□□ 2.63
PRKCD-202ENST00000394729 ERCC6Q03468 1493 aa31.42■■■□□ 2.62
PRKCD-202ENST00000394729 ATP1B4Q9UN42 357 aaPredicted RBP31.42■■■□□ 2.62
PRKCD-202ENST00000394729 ERICH3Q5RHP9 1530 aa31.41■■■□□ 2.62
PRKCD-202ENST00000394729 ABCA10Q8WWZ4 1543 aa31.38■■■□□ 2.61
PRKCD-202ENST00000394729 VPS8Q8N3P4 1428 aa31.34■■■□□ 2.61
PRKCD-202ENST00000394729 AQRO60306 1485 aaKnown RBP eCLIP31.32■■■□□ 2.61e-6■■■■□ 25.1
PRKCD-202ENST00000394729 ARAP1Q96P48 1450 aa31.3■■■□□ 2.6
PRKCD-202ENST00000394729 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.29■■■□□ 2.6
PRKCD-202ENST00000394729 GAPVD1Q14C86 1478 aa31.27■■■□□ 2.6
PRKCD-202ENST00000394729 MRC2Q9UBG0 1479 aa31.25■■■□□ 2.59
PRKCD-202ENST00000394729 HNRNPUL2Q1KMD3 747 aaKnown RBP31.24■■■□□ 2.59
PRKCD-202ENST00000394729 KANK4Q5T7N3 995 aaPredicted RBP31.22■■■□□ 2.59
PRKCD-202ENST00000394729 ARHGAP35Q9NRY4 1499 aa31.2■■■□□ 2.59
PRKCD-202ENST00000394729 ZNF608Q9ULD9 1512 aaPredicted RBP31.17■■■□□ 2.58
PRKCD-202ENST00000394729 FBLN2P98095 1184 aa31.14■■■□□ 2.58
PRKCD-202ENST00000394729 FHOD3Q2V2M9 1422 aa31.07■■■□□ 2.56
PRKCD-202ENST00000394729 TARBP1Q13395 1621 aaKnown RBP31.07■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms