Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.457e-6■■■□□ 14.8
DDX55Q8NHQ9 GMDS-203ENST00000467288 900 ntTSL 523.88■■□□□ 1.417e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.43e-8■■■□□ 14.8
DDX55Q8NHQ9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.377e-6■■■□□ 14.8
DDX55Q8NHQ9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.377e-6■■■□□ 14.8
DDX55Q8NHQ9 GMDS-205ENST00000486793 567 ntTSL 323.56■■□□□ 1.367e-6■■■□□ 14.8
DDX55Q8NHQ9 GMDS-204ENST00000476972 591 ntTSL 223.56■■□□□ 1.367e-6■■■□□ 14.8
DDX55Q8NHQ9 AKAP8L-203ENST00000594594 2251 ntTSL 523.5■■□□□ 1.352e-6■■■□□ 14.8
DDX55Q8NHQ9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.357e-6■■■□□ 14.8
DDX55Q8NHQ9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC23.46■■□□□ 1.353e-8■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.341e-10■■■□□ 14.8
DDX55Q8NHQ9 RGS12-216ENST00000509772 540 ntTSL 323.05■■□□□ 1.287e-6■■■□□ 14.8
DDX55Q8NHQ9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.247e-6■■■□□ 14.8
DDX55Q8NHQ9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.7■■□□□ 1.222e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.143e-8■■■□□ 14.8
DDX55Q8NHQ9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.117e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.083e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.8■■□□□ 1.083e-8■■■□□ 14.8
DDX55Q8NHQ9 PAM16-210ENST00000575636 732 ntTSL 321.6■■□□□ 1.056e-8■■■□□ 14.8
DDX55Q8NHQ9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.047e-6■■■□□ 14.8
DDX55Q8NHQ9 AKAP8L-220ENST00000609519 2113 ntTSL 221.44■■□□□ 1.022e-6■■■□□ 14.8
DDX55Q8NHQ9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.42■■□□□ 1.027e-6■■■□□ 14.8
DDX55Q8NHQ9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.022e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-205ENST00000571986 606 ntTSL 321.39■■□□□ 1.019e-8■■■□□ 14.8
DDX55Q8NHQ9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.39■■□□□ 1.016e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.013e-8■■■□□ 14.8
DDX55Q8NHQ9 GMDS-201ENST00000380805 1743 ntTSL 221.25■□□□□ 0.997e-6■■■□□ 14.8
DDX55Q8NHQ9 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.01■□□□□ 0.957e-6■■■□□ 14.8
DDX55Q8NHQ9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.94■□□□□ 0.947e-6■■■□□ 14.8
DDX55Q8NHQ9 PPIF-203ENST00000472580 761 ntTSL 520.87■□□□□ 0.937e-6■■■□□ 14.8
DDX55Q8NHQ9 PPIF-205ENST00000498681 518 ntTSL 220.87■□□□□ 0.937e-6■■■□□ 14.8
DDX55Q8NHQ9 PPIF-204ENST00000492149 646 ntTSL 220.75■□□□□ 0.917e-6■■■□□ 14.8
DDX55Q8NHQ9 PKDCC-204ENST00000475241 773 ntTSL 320.51■□□□□ 0.873e-8■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.39■□□□□ 0.851e-10■■■□□ 14.8
DDX55Q8NHQ9 HGS-212ENST00000575058 632 ntTSL 320.34■□□□□ 0.857e-6■■■□□ 14.8
DDX55Q8NHQ9 PI4KB-207ENST00000446339 566 ntTSL 320.19■□□□□ 0.827e-6■■■□□ 14.8
DDX55Q8NHQ9 TSC22D4-203ENST00000423266 1071 ntTSL 220.14■□□□□ 0.812e-8■■■□□ 14.8
DDX55Q8NHQ9 HGS-204ENST00000571237 878 ntTSL 319.98■□□□□ 0.797e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.773e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.773e-8■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.767e-6■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.757e-6■■■□□ 14.8
DDX55Q8NHQ9 CORO7-PAM16-201ENST00000572274 672 ntTSL 519.71■□□□□ 0.751e-7■■■□□ 14.8
DDX55Q8NHQ9 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.749e-8■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-201ENST00000318787 1350 ntTSL 1 (best)19.65■□□□□ 0.747e-6■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.59■□□□□ 0.731e-10■■■□□ 14.8
DDX55Q8NHQ9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.77e-6■■■□□ 14.8
DDX55Q8NHQ9 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.697e-6■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-209ENST00000533788 899 ntTSL 519.34■□□□□ 0.691e-10■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.27■□□□□ 0.681e-10■■■□□ 14.8
DDX55Q8NHQ9 PPIF-202ENST00000448165 821 ntTSL 219.16■□□□□ 0.667e-6■■■□□ 14.8
DDX55Q8NHQ9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.13■□□□□ 0.657e-6■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.647e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-206ENST00000573236 704 ntTSL 1 (best)18.98■□□□□ 0.636e-8■■■□□ 14.8
DDX55Q8NHQ9 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.98■□□□□ 0.636e-8■■■□□ 14.8
DDX55Q8NHQ9 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.97■□□□□ 0.639e-8■■■□□ 14.8
DDX55Q8NHQ9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.627e-6■■■□□ 14.8
DDX55Q8NHQ9 AKAP8L-202ENST00000593845 2749 ntTSL 218.84■□□□□ 0.612e-6■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.67e-6■■■□□ 14.8
DDX55Q8NHQ9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.78■□□□□ 0.63e-8■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-205ENST00000527081 2061 ntTSL 218.53■□□□□ 0.561e-10■■■□□ 14.8
DDX55Q8NHQ9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.561e-10■■■□□ 14.8
DDX55Q8NHQ9 C7orf26-206ENST00000477298 542 ntTSL 318.49■□□□□ 0.557e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-209ENST00000573614 650 ntTSL 518.48■□□□□ 0.559e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.553e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.44■□□□□ 0.543e-8■■■□□ 14.8
DDX55Q8NHQ9 C2-217ENST00000497706 1609 ntTSL 518.4■□□□□ 0.548e-11■■■□□ 14.8
DDX55Q8NHQ9 PAM16-203ENST00000571819 317 ntTSL 518.39■□□□□ 0.537e-8■■■□□ 14.8
DDX55Q8NHQ9 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.532e-8■■■□□ 14.8
DDX55Q8NHQ9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.537e-6■■■□□ 14.8
DDX55Q8NHQ9 CORO7-PAM16-203ENST00000575334 3815 ntTSL 218.22■□□□□ 0.518e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.15■□□□□ 0.53e-8■■■□□ 14.8
DDX55Q8NHQ9 AES-204ENST00000585782 505 ntTSL 218.1■□□□□ 0.491e-10■■■□□ 14.8
DDX55Q8NHQ9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.497e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-202ENST00000571178 353 ntTSL 318.08■□□□□ 0.489e-8■■■□□ 14.8
DDX55Q8NHQ9 AP1S1-202ENST00000429457 573 ntTSL 518.06■□□□□ 0.487e-6■■■□□ 14.8
DDX55Q8NHQ9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.463e-8■■■□□ 14.8
DDX55Q8NHQ9 ARFRP1-204ENST00000609537 593 ntTSL 317.9■□□□□ 0.467e-6■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-207ENST00000529976 4684 ntTSL 1 (best)17.89■□□□□ 0.451e-10■■■□□ 14.8
DDX55Q8NHQ9 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.447e-6■■■□□ 14.8
DDX55Q8NHQ9 PI4KB-208ENST00000455060 934 ntTSL 217.77■□□□□ 0.447e-6■■■□□ 14.8
DDX55Q8NHQ9 C7orf26-205ENST00000472693 1006 ntTSL 517.73■□□□□ 0.437e-6■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.7■□□□□ 0.427e-6■■■□□ 14.8
DDX55Q8NHQ9 CANT1-214ENST00000592228 1546 ntTSL 517.67■□□□□ 0.427e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.62■□□□□ 0.416e-8■■■□□ 14.8
DDX55Q8NHQ9 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.418e-8■■■□□ 14.8
DDX55Q8NHQ9 MOB2-206ENST00000531976 3174 ntTSL 1 (best)17.54■□□□□ 0.43e-8■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-211ENST00000591807 542 ntTSL 417.54■□□□□ 0.43e-8■■■□□ 14.8
DDX55Q8NHQ9 AES-205ENST00000586003 367 ntTSL 217.46■□□□□ 0.393e-17■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.45■□□□□ 0.387e-6■■■□□ 14.8
DDX55Q8NHQ9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.39■□□□□ 0.377e-6■■■□□ 14.8
DDX55Q8NHQ9 ZFYVE21-207ENST00000554757 2013 ntTSL 217.37■□□□□ 0.377e-6■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-209ENST00000609477 564 ntTSL 417.31■□□□□ 0.367e-6■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.367e-6■■■□□ 14.8
DDX55Q8NHQ9 NPEPL1-206ENST00000527587 4633 ntTSL 517.28■□□□□ 0.361e-10■■■□□ 14.8
DDX55Q8NHQ9 SLC38A5-209ENST00000497336 493 ntTSL 517.24■□□□□ 0.357e-6■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-206ENST00000589607 573 ntTSL 416.96■□□□□ 0.313e-8■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.94■□□□□ 0.37e-6■■■□□ 14.8
DDX55Q8NHQ9 SFXN4-207ENST00000484960 555 ntTSL 316.91■□□□□ 0.37e-6■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-212ENST00000600677 2022 ntTSL 516.86■□□□□ 0.291e-10■■■□□ 14.8
Retrieved 100 of 15,504 protein–RNA pairs in 176.9 ms