RNA–Protein interactions for RNA: ENST00000608295.5

HDDC2-204, Transcript of HD domain containing 2, humanhuman

TSL 5 BASIC

Gene HDDC2, Length 879 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-204ENST00000608295 NISCHQ9Y2I1 1504 aa35.48■■■■□ 3.27
HDDC2-204ENST00000608295 CCDC180Q9P1Z9 1646 aa31.66■■■□□ 2.66
HDDC2-204ENST00000608295 ABCC9O60706 1549 aa31.26■■■□□ 2.59
HDDC2-204ENST00000608295 RB1CC1Q8TDY2 1594 aa29.88■■■□□ 2.37
HDDC2-204ENST00000608295 DCAF8L2P0C7V8 631 aa29.85■■■□□ 2.37
HDDC2-204ENST00000608295 NACADO15069 1562 aa29.73■■■□□ 2.35
HDDC2-204ENST00000608295 ZCCHC6Q5VYS8 1495 aaKnown RBP29.55■■■□□ 2.32
HDDC2-204ENST00000608295 MYO15BQ96JP2 1530 aa29.37■■■□□ 2.29
HDDC2-204ENST00000608295 UNC13AQ9UPW8 1703 aa29.36■■■□□ 2.29
HDDC2-204ENST00000608295 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
HDDC2-204ENST00000608295 PABPN1Q86U42 306 aaKnown RBP eCLIP29.15■■■□□ 2.26
HDDC2-204ENST00000608295 SCRIBQ14160 1630 aa29.05■■■□□ 2.24
HDDC2-204ENST00000608295 BICRAQ9NZM4 1560 aa29.01■■■□□ 2.23
HDDC2-204ENST00000608295 DNAJC5BQ9UF47 199 aa28.74■■■□□ 2.19
HDDC2-204ENST00000608295 SHROOM4Q9ULL8 1493 aa28.5■■■□□ 2.15
HDDC2-204ENST00000608295 EIF4G1Q04637 1599 aaKnown RBP28.27■■■□□ 2.12
HDDC2-204ENST00000608295 CC2D2AQ9P2K1 1620 aa28.22■■■□□ 2.11
HDDC2-204ENST00000608295 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
HDDC2-204ENST00000608295 SMARCA4P51532 1647 aa27.65■■■□□ 2.02
HDDC2-204ENST00000608295 BAZ1AQ9NRL2 1556 aaPredicted RBP27.53■■■□□ 2
HDDC2-204ENST00000608295 ATAD2BQ9ULI0 1458 aa27.46■■□□□ 1.99
HDDC2-204ENST00000608295 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
HDDC2-204ENST00000608295 SMARCA2P51531 1590 aa27.42■■□□□ 1.98
HDDC2-204ENST00000608295 NCAPD3P42695 1498 aa27.38■■□□□ 1.97
HDDC2-204ENST00000608295 HMGXB3Q12766 1538 aa27.32■■□□□ 1.96
HDDC2-204ENST00000608295 BAZ1BQ9UIG0 1483 aaKnown RBP27.29■■□□□ 1.96
HDDC2-204ENST00000608295 PEG3Q9GZU2 1588 aa27.26■■□□□ 1.95
HDDC2-204ENST00000608295 WIZO95785 1651 aa27.19■■□□□ 1.94
HDDC2-204ENST00000608295 NESP48681 1621 aa27.01■■□□□ 1.91
HDDC2-204ENST00000608295 RSF1Q96T23 1441 aaPredicted RBP26.98■■□□□ 1.91
HDDC2-204ENST00000608295 ERCC6Q03468 1493 aa26.93■■□□□ 1.9
HDDC2-204ENST00000608295 TOP2AP11388 1531 aaKnown RBP26.8■■□□□ 1.88
HDDC2-204ENST00000608295 LAMC3Q9Y6N6 1575 aa26.78■■□□□ 1.88
HDDC2-204ENST00000608295 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
HDDC2-204ENST00000608295 CADPSQ9ULU8 1353 aa26.61■■□□□ 1.85
HDDC2-204ENST00000608295 THOC2Q8NI27 1593 aaKnown RBP26.61■■□□□ 1.85
HDDC2-204ENST00000608295 CUX2O14529 1486 aa26.57■■□□□ 1.84
HDDC2-204ENST00000608295 PDS5BQ9NTI5 1447 aa26.56■■□□□ 1.84
HDDC2-204ENST00000608295 CCDC88BA6NC98 1476 aa26.46■■□□□ 1.83
HDDC2-204ENST00000608295 CFTRP13569 1480 aa26.43■■□□□ 1.82
HDDC2-204ENST00000608295 FANCD2Q9BXW9 1451 aa26.41■■□□□ 1.82
HDDC2-204ENST00000608295 CEP164Q9UPV0 1460 aa26.41■■□□□ 1.82
HDDC2-204ENST00000608295 PRDM2Q13029 1718 aa26.39■■□□□ 1.81
HDDC2-204ENST00000608295 MRC2Q9UBG0 1479 aa26.38■■□□□ 1.81
HDDC2-204ENST00000608295 SUPT5HO00267 1087 aaKnown RBP26.3■■□□□ 1.8
HDDC2-204ENST00000608295 WDR62O43379 1518 aa26.29■■□□□ 1.8
HDDC2-204ENST00000608295 URB2Q14146 1524 aaKnown RBP26.18■■□□□ 1.78
HDDC2-204ENST00000608295 TOPBP1Q92547 1522 aa25.97■■□□□ 1.75
HDDC2-204ENST00000608295 DNMBPQ6XZF7 1577 aa25.93■■□□□ 1.74
HDDC2-204ENST00000608295 DNAJC5Q9H3Z4 198 aa25.91■■□□□ 1.74
HDDC2-204ENST00000608295 ABCC8Q09428 1581 aa25.81■■□□□ 1.72
HDDC2-204ENST00000608295 ZNF608Q9ULD9 1512 aaPredicted RBP25.8■■□□□ 1.72
HDDC2-204ENST00000608295 IFT140Q96RY7 1462 aa25.79■■□□□ 1.72
HDDC2-204ENST00000608295 CUX1P39880 1505 aa25.74■■□□□ 1.71
HDDC2-204ENST00000608295 EIF4G3O43432 1585 aaKnown RBP25.73■■□□□ 1.71
HDDC2-204ENST00000608295 POLA1P09884 1462 aaPredicted RBP25.73■■□□□ 1.71
HDDC2-204ENST00000608295 TARBP1Q13395 1621 aaKnown RBP25.7■■□□□ 1.71
HDDC2-204ENST00000608295 FGD5Q6ZNL6 1462 aa25.69■■□□□ 1.7
HDDC2-204ENST00000608295 RAD54L2Q9Y4B4 1467 aa25.68■■□□□ 1.7
HDDC2-204ENST00000608295 AQRO60306 1485 aaKnown RBP eCLIP25.6■■□□□ 1.697e-8■■■■■ 35.6
HDDC2-204ENST00000608295 SOGA1O94964 1423 aa25.58■■□□□ 1.69
HDDC2-204ENST00000608295 TDRD9Q8NDG6 1382 aaKnown RBP25.53■■□□□ 1.68
HDDC2-204ENST00000608295 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
HDDC2-204ENST00000608295 WDR97A6NE52 1622 aa25.52■■□□□ 1.68
HDDC2-204ENST00000608295 CHD1O14646 1710 aa25.49■■□□□ 1.67
HDDC2-204ENST00000608295 WRNQ14191 1432 aaPredicted RBP eCLIP25.47■■□□□ 1.67
HDDC2-204ENST00000608295 BIVM-ERCC5R4GMW8 1640 aa25.47■■□□□ 1.67
HDDC2-204ENST00000608295 TOP2BQ02880 1626 aa25.44■■□□□ 1.66
HDDC2-204ENST00000608295 OSCARQ8IYS5 282 aa25.41■■□□□ 1.66
HDDC2-204ENST00000608295 PBRM1Q86U86 1689 aa25.41■■□□□ 1.66
HDDC2-204ENST00000608295 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
HDDC2-204ENST00000608295 FBLN2P98095 1184 aa25.37■■□□□ 1.65
HDDC2-204ENST00000608295 ABCA10Q8WWZ4 1543 aa25.34■■□□□ 1.65
HDDC2-204ENST00000608295 ABCA5Q8WWZ7 1642 aa25.34■■□□□ 1.65
HDDC2-204ENST00000608295 GRIN2BQ13224 1484 aa25.31■■□□□ 1.64
HDDC2-204ENST00000608295 GAPVD1Q14C86 1478 aa25.31■■□□□ 1.64
HDDC2-204ENST00000608295 MAGI1Q96QZ7 1491 aaPredicted RBP25.25■■□□□ 1.63
HDDC2-204ENST00000608295 TRIM41Q8WV44 630 aa25.22■■□□□ 1.63
HDDC2-204ENST00000608295 RIMBP3CA6NJZ7 1639 aa25.21■■□□□ 1.63
HDDC2-204ENST00000608295 RIMBP3BA6NNM3 1639 aa25.21■■□□□ 1.63
HDDC2-204ENST00000608295 RIMBP3Q9UFD9 1639 aa25.21■■□□□ 1.63
HDDC2-204ENST00000608295 SYNJ2O15056 1496 aa25.17■■□□□ 1.62
HDDC2-204ENST00000608295 CHMP7Q8WUX9 453 aaPredicted RBP25.17■■□□□ 1.62
HDDC2-204ENST00000608295 ADAMTS12P58397 1594 aa25.14■■□□□ 1.61
HDDC2-204ENST00000608295 ARHGEF11O15085 1522 aa25.13■■□□□ 1.61
HDDC2-204ENST00000608295 CLASP1Q7Z460 1538 aa25.07■■□□□ 1.6
HDDC2-204ENST00000608295 ERICH3Q5RHP9 1530 aa25.03■■□□□ 1.6
HDDC2-204ENST00000608295 GRIN2AQ12879 1464 aa25.02■■□□□ 1.6
HDDC2-204ENST00000608295 CEP170Q5SW79 1584 aa24.97■■□□□ 1.59
HDDC2-204ENST00000608295 FHAD1B1AJZ9 1412 aa24.97■■□□□ 1.59
HDDC2-204ENST00000608295 ARAP1Q96P48 1450 aa24.93■■□□□ 1.58
HDDC2-204ENST00000608295 KIF27Q86VH2 1401 aa24.91■■□□□ 1.58
HDDC2-204ENST00000608295 CYB5RLQ6IPT4 315 aa24.88■■□□□ 1.57
HDDC2-204ENST00000608295 NUP160Q12769 1436 aa24.86■■□□□ 1.57
HDDC2-204ENST00000608295 CUL7Q14999 1698 aa24.85■■□□□ 1.57
HDDC2-204ENST00000608295 ERCC6L2Q5T890 1561 aa24.82■■□□□ 1.56
HDDC2-204ENST00000608295 IGF1RP08069 1367 aa24.79■■□□□ 1.56
HDDC2-204ENST00000608295 RUSC2Q8N2Y8 1516 aa24.78■■□□□ 1.56
HDDC2-204ENST00000608295 SHROOM2Q13796 1616 aa24.74■■□□□ 1.55
HDDC2-204ENST00000608295 CARMIL1Q5VZK9 1371 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms