RNA–Protein interactions for RNA: ENST00000398153.6

HDDC2-202, Transcript of HD domain containing 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDDC2, Length 918 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-202ENST00000398153 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
HDDC2-202ENST00000398153 CCDC180Q9P1Z9 1646 aa30.87■■■□□ 2.53
HDDC2-202ENST00000398153 ABCC9O60706 1549 aa30.06■■■□□ 2.4
HDDC2-202ENST00000398153 RB1CC1Q8TDY2 1594 aa29.04■■■□□ 2.24
HDDC2-202ENST00000398153 NACADO15069 1562 aa29.02■■■□□ 2.24
HDDC2-202ENST00000398153 MYO15BQ96JP2 1530 aa28.92■■■□□ 2.22
HDDC2-202ENST00000398153 DCAF8L2P0C7V8 631 aa28.87■■■□□ 2.21
HDDC2-202ENST00000398153 ZCCHC6Q5VYS8 1495 aaKnown RBP28.86■■■□□ 2.21
HDDC2-202ENST00000398153 DCAF1Q9Y4B6 1507 aa28.76■■■□□ 2.19
HDDC2-202ENST00000398153 UNC13AQ9UPW8 1703 aa28.3■■■□□ 2.12
HDDC2-202ENST00000398153 BICRAQ9NZM4 1560 aa28.09■■■□□ 2.09
HDDC2-202ENST00000398153 PABPN1Q86U42 306 aaKnown RBP eCLIP28.07■■■□□ 2.08
HDDC2-202ENST00000398153 SCRIBQ14160 1630 aa28.03■■■□□ 2.08
HDDC2-202ENST00000398153 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.07
HDDC2-202ENST00000398153 DNAJC5BQ9UF47 199 aa27.57■■■□□ 2
HDDC2-202ENST00000398153 EIF4G1Q04637 1599 aaKnown RBP27.37■■□□□ 1.97
HDDC2-202ENST00000398153 CC2D2AQ9P2K1 1620 aa27.24■■□□□ 1.95
HDDC2-202ENST00000398153 CECR2Q9BXF3 1484 aa27.06■■□□□ 1.92
HDDC2-202ENST00000398153 BAZ1AQ9NRL2 1556 aaPredicted RBP26.89■■□□□ 1.9
HDDC2-202ENST00000398153 SMARCA4P51532 1647 aa26.88■■□□□ 1.89
HDDC2-202ENST00000398153 NCAPD3P42695 1498 aa26.77■■□□□ 1.88
HDDC2-202ENST00000398153 SMARCA2P51531 1590 aa26.75■■□□□ 1.87
HDDC2-202ENST00000398153 ATAD2BQ9ULI0 1458 aa26.74■■□□□ 1.87
HDDC2-202ENST00000398153 PEG3Q9GZU2 1588 aa26.68■■□□□ 1.86
HDDC2-202ENST00000398153 MROH2BQ7Z745 1585 aa26.65■■□□□ 1.86
HDDC2-202ENST00000398153 HMGXB3Q12766 1538 aa26.64■■□□□ 1.85
HDDC2-202ENST00000398153 BAZ1BQ9UIG0 1483 aaKnown RBP26.52■■□□□ 1.84
HDDC2-202ENST00000398153 RSF1Q96T23 1441 aaPredicted RBP26.38■■□□□ 1.81
HDDC2-202ENST00000398153 WIZO95785 1651 aa26.36■■□□□ 1.81
HDDC2-202ENST00000398153 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.77
HDDC2-202ENST00000398153 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
HDDC2-202ENST00000398153 NESP48681 1621 aa25.99■■□□□ 1.75
HDDC2-202ENST00000398153 CADPSQ9ULU8 1353 aa25.97■■□□□ 1.75
HDDC2-202ENST00000398153 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
HDDC2-202ENST00000398153 PDS5BQ9NTI5 1447 aa25.9■■□□□ 1.74
HDDC2-202ENST00000398153 CFTRP13569 1480 aa25.82■■□□□ 1.72
HDDC2-202ENST00000398153 CCDC88BA6NC98 1476 aa25.8■■□□□ 1.72
HDDC2-202ENST00000398153 CUX2O14529 1486 aa25.76■■□□□ 1.71
HDDC2-202ENST00000398153 KIF21AQ7Z4S6 1674 aa25.73■■□□□ 1.71
HDDC2-202ENST00000398153 THOC2Q8NI27 1593 aaKnown RBP25.66■■□□□ 1.7
HDDC2-202ENST00000398153 SUPT5HO00267 1087 aaKnown RBP25.64■■□□□ 1.7
HDDC2-202ENST00000398153 FANCD2Q9BXW9 1451 aa25.64■■□□□ 1.69
HDDC2-202ENST00000398153 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
HDDC2-202ENST00000398153 CEP164Q9UPV0 1460 aa25.62■■□□□ 1.69
HDDC2-202ENST00000398153 MRC2Q9UBG0 1479 aa25.58■■□□□ 1.69
HDDC2-202ENST00000398153 WDR62O43379 1518 aa25.51■■□□□ 1.67
HDDC2-202ENST00000398153 URB2Q14146 1524 aaKnown RBP25.35■■□□□ 1.65
HDDC2-202ENST00000398153 ABCC8Q09428 1581 aa25.34■■□□□ 1.65
HDDC2-202ENST00000398153 TOPBP1Q92547 1522 aa25.22■■□□□ 1.63
HDDC2-202ENST00000398153 DNMBPQ6XZF7 1577 aa25.22■■□□□ 1.63
HDDC2-202ENST00000398153 IFT140Q96RY7 1462 aa25.11■■□□□ 1.61
HDDC2-202ENST00000398153 POLA1P09884 1462 aaPredicted RBP25.01■■□□□ 1.59
HDDC2-202ENST00000398153 CUX1P39880 1505 aa25.01■■□□□ 1.59
HDDC2-202ENST00000398153 TARBP1Q13395 1621 aaKnown RBP24.96■■□□□ 1.59
HDDC2-202ENST00000398153 DNAJC5Q9H3Z4 198 aa24.94■■□□□ 1.58
HDDC2-202ENST00000398153 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
HDDC2-202ENST00000398153 SOGA1O94964 1423 aa24.93■■□□□ 1.58
HDDC2-202ENST00000398153 ZNF608Q9ULD9 1512 aaPredicted RBP24.9■■□□□ 1.58
HDDC2-202ENST00000398153 WRNQ14191 1432 aaPredicted RBP eCLIP24.89■■□□□ 1.58
HDDC2-202ENST00000398153 WDR97A6NE52 1622 aa24.87■■□□□ 1.57
HDDC2-202ENST00000398153 RAD54L2Q9Y4B4 1467 aa24.85■■□□□ 1.57
HDDC2-202ENST00000398153 TOP2BQ02880 1626 aa24.85■■□□□ 1.57
HDDC2-202ENST00000398153 BIVM-ERCC5R4GMW8 1640 aa24.84■■□□□ 1.57
HDDC2-202ENST00000398153 EIF4G3O43432 1585 aaKnown RBP24.84■■□□□ 1.57
HDDC2-202ENST00000398153 AQRO60306 1485 aaKnown RBP eCLIP24.78■■□□□ 1.567e-8■■■■■ 35.6
HDDC2-202ENST00000398153 SYNJ1O43426 1573 aa24.77■■□□□ 1.56
HDDC2-202ENST00000398153 ABCA10Q8WWZ4 1543 aa24.75■■□□□ 1.55
HDDC2-202ENST00000398153 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
HDDC2-202ENST00000398153 OSCARQ8IYS5 282 aa24.69■■□□□ 1.54
HDDC2-202ENST00000398153 GRIN2BQ13224 1484 aa24.65■■□□□ 1.54
HDDC2-202ENST00000398153 GAPVD1Q14C86 1478 aa24.64■■□□□ 1.54
HDDC2-202ENST00000398153 ABCA5Q8WWZ7 1642 aa24.61■■□□□ 1.53
HDDC2-202ENST00000398153 MAGI1Q96QZ7 1491 aaPredicted RBP24.61■■□□□ 1.53
HDDC2-202ENST00000398153 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
HDDC2-202ENST00000398153 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
HDDC2-202ENST00000398153 CHD1O14646 1710 aa24.51■■□□□ 1.51
HDDC2-202ENST00000398153 SYNJ2O15056 1496 aa24.49■■□□□ 1.51
HDDC2-202ENST00000398153 FBLN2P98095 1184 aa24.48■■□□□ 1.51
HDDC2-202ENST00000398153 CHMP7Q8WUX9 453 aaPredicted RBP24.48■■□□□ 1.51
HDDC2-202ENST00000398153 ERICH3Q5RHP9 1530 aa24.47■■□□□ 1.51
HDDC2-202ENST00000398153 KIF27Q86VH2 1401 aa24.4■■□□□ 1.5
HDDC2-202ENST00000398153 FHAD1B1AJZ9 1412 aa24.37■■□□□ 1.49
HDDC2-202ENST00000398153 ADAMTS12P58397 1594 aa24.37■■□□□ 1.49
HDDC2-202ENST00000398153 GRIN2AQ12879 1464 aa24.32■■□□□ 1.48
HDDC2-202ENST00000398153 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
HDDC2-202ENST00000398153 CLASP1Q7Z460 1538 aa24.29■■□□□ 1.48
HDDC2-202ENST00000398153 IGF1RP08069 1367 aa24.28■■□□□ 1.48
HDDC2-202ENST00000398153 CUL7Q14999 1698 aa24.24■■□□□ 1.47
HDDC2-202ENST00000398153 ARHGEF11O15085 1522 aa24.22■■□□□ 1.47
HDDC2-202ENST00000398153 NUP160Q12769 1436 aa24.22■■□□□ 1.47
HDDC2-202ENST00000398153 RIMBP3CA6NJZ7 1639 aa24.21■■□□□ 1.47
HDDC2-202ENST00000398153 RIMBP3BA6NNM3 1639 aa24.21■■□□□ 1.47
HDDC2-202ENST00000398153 RIMBP3Q9UFD9 1639 aa24.21■■□□□ 1.47
HDDC2-202ENST00000398153 CEP170Q5SW79 1584 aa24.16■■□□□ 1.46
HDDC2-202ENST00000398153 CARMIL1Q5VZK9 1371 aa24.14■■□□□ 1.45
HDDC2-202ENST00000398153 RUSC2Q8N2Y8 1516 aa24.05■■□□□ 1.44
HDDC2-202ENST00000398153 SHROOM2Q13796 1616 aa24.04■■□□□ 1.44
HDDC2-202ENST00000398153 KIAA0586Q9BVV6 1533 aa24.01■■□□□ 1.43
HDDC2-202ENST00000398153 ARAP1Q96P48 1450 aa24■■□□□ 1.43
HDDC2-202ENST00000398153 RAPGEF2Q9Y4G8 1499 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 302.5 ms