RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 NISCHQ9Y2I1 1504 aa39.29■■■■□ 3.88
HDDC2-201ENST00000318787 CCDC180Q9P1Z9 1646 aa35.09■■■■□ 3.21
HDDC2-201ENST00000318787 ABCC9O60706 1549 aa34.63■■■■□ 3.13
HDDC2-201ENST00000318787 RB1CC1Q8TDY2 1594 aa33.15■■■□□ 2.9
HDDC2-201ENST00000318787 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
HDDC2-201ENST00000318787 NACADO15069 1562 aa32.99■■■□□ 2.87
HDDC2-201ENST00000318787 ZCCHC6Q5VYS8 1495 aaKnown RBP32.67■■■□□ 2.82
HDDC2-201ENST00000318787 MYO15BQ96JP2 1530 aa32.58■■■□□ 2.81
HDDC2-201ENST00000318787 UNC13AQ9UPW8 1703 aa32.52■■■□□ 2.8
HDDC2-201ENST00000318787 DCAF1Q9Y4B6 1507 aa32.4■■■□□ 2.78
HDDC2-201ENST00000318787 PABPN1Q86U42 306 aaKnown RBP eCLIP32.3■■■□□ 2.76
HDDC2-201ENST00000318787 AEBP2Q6ZN18 517 aaPredicted RBP32.24■■■□□ 2.75
HDDC2-201ENST00000318787 DNAJC5BQ9UF47 199 aa32.19■■■□□ 2.74
HDDC2-201ENST00000318787 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
HDDC2-201ENST00000318787 SCRIBQ14160 1630 aa32.11■■■□□ 2.73
HDDC2-201ENST00000318787 SHROOM4Q9ULL8 1493 aa31.64■■■□□ 2.66
HDDC2-201ENST00000318787 EIF4G1Q04637 1599 aaKnown RBP31.32■■■□□ 2.61
HDDC2-201ENST00000318787 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
HDDC2-201ENST00000318787 CECR2Q9BXF3 1484 aa31.08■■■□□ 2.57
HDDC2-201ENST00000318787 CHIC1Q5VXU3 224 aa31.04■■■□□ 2.56
HDDC2-201ENST00000318787 SMARCA4P51532 1647 aa30.6■■■□□ 2.49
HDDC2-201ENST00000318787 BAZ1AQ9NRL2 1556 aaPredicted RBP30.5■■■□□ 2.47
HDDC2-201ENST00000318787 ATAD2BQ9ULI0 1458 aa30.42■■■□□ 2.46
HDDC2-201ENST00000318787 SMARCA2P51531 1590 aa30.41■■■□□ 2.46
HDDC2-201ENST00000318787 NCAPD3P42695 1498 aa30.38■■■□□ 2.45
HDDC2-201ENST00000318787 MROH2BQ7Z745 1585 aa30.32■■■□□ 2.44
HDDC2-201ENST00000318787 HMGXB3Q12766 1538 aa30.27■■■□□ 2.44
HDDC2-201ENST00000318787 BAZ1BQ9UIG0 1483 aaKnown RBP30.23■■■□□ 2.43
HDDC2-201ENST00000318787 PEG3Q9GZU2 1588 aa30.19■■■□□ 2.42
HDDC2-201ENST00000318787 WIZO95785 1651 aa30.07■■■□□ 2.4
HDDC2-201ENST00000318787 ERCC6Q03468 1493 aa29.89■■■□□ 2.38
HDDC2-201ENST00000318787 NESP48681 1621 aa29.88■■■□□ 2.37
HDDC2-201ENST00000318787 RSF1Q96T23 1441 aaPredicted RBP29.83■■■□□ 2.37
HDDC2-201ENST00000318787 LAMC3Q9Y6N6 1575 aa29.72■■■□□ 2.35
HDDC2-201ENST00000318787 TOP2AP11388 1531 aaKnown RBP29.65■■■□□ 2.34
HDDC2-201ENST00000318787 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
HDDC2-201ENST00000318787 CUX2O14529 1486 aa29.55■■■□□ 2.32
HDDC2-201ENST00000318787 CADPSQ9ULU8 1353 aa29.52■■■□□ 2.32
HDDC2-201ENST00000318787 PDS5BQ9NTI5 1447 aa29.49■■■□□ 2.31
HDDC2-201ENST00000318787 THOC2Q8NI27 1593 aaKnown RBP29.46■■■□□ 2.31
HDDC2-201ENST00000318787 DNAJC5Q9H3Z4 198 aa29.31■■■□□ 2.28
HDDC2-201ENST00000318787 CFTRP13569 1480 aa29.29■■■□□ 2.28
HDDC2-201ENST00000318787 CCDC88BA6NC98 1476 aa29.28■■■□□ 2.28
HDDC2-201ENST00000318787 CEP164Q9UPV0 1460 aa29.26■■■□□ 2.28
HDDC2-201ENST00000318787 FANCD2Q9BXW9 1451 aa29.26■■■□□ 2.27
HDDC2-201ENST00000318787 PRDM2Q13029 1718 aa29.25■■■□□ 2.27
HDDC2-201ENST00000318787 MRC2Q9UBG0 1479 aa29.24■■■□□ 2.27
HDDC2-201ENST00000318787 WDR62O43379 1518 aa29.13■■■□□ 2.25
HDDC2-201ENST00000318787 SUPT5HO00267 1087 aaKnown RBP29.08■■■□□ 2.25
HDDC2-201ENST00000318787 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
HDDC2-201ENST00000318787 TOPBP1Q92547 1522 aa28.75■■■□□ 2.19
HDDC2-201ENST00000318787 DNMBPQ6XZF7 1577 aa28.72■■■□□ 2.19
HDDC2-201ENST00000318787 ABCC8Q09428 1581 aa28.68■■■□□ 2.18
HDDC2-201ENST00000318787 IFT140Q96RY7 1462 aa28.61■■■□□ 2.17
HDDC2-201ENST00000318787 ZNF608Q9ULD9 1512 aaPredicted RBP28.55■■■□□ 2.16
HDDC2-201ENST00000318787 POLA1P09884 1462 aaPredicted RBP28.49■■■□□ 2.15
HDDC2-201ENST00000318787 EIF4G3O43432 1585 aaKnown RBP28.48■■■□□ 2.15
HDDC2-201ENST00000318787 TARBP1Q13395 1621 aaKnown RBP28.46■■■□□ 2.15
HDDC2-201ENST00000318787 CUX1P39880 1505 aa28.46■■■□□ 2.15
HDDC2-201ENST00000318787 FGD5Q6ZNL6 1462 aa28.42■■■□□ 2.14
HDDC2-201ENST00000318787 RAD54L2Q9Y4B4 1467 aa28.41■■■□□ 2.14
HDDC2-201ENST00000318787 SOGA1O94964 1423 aa28.37■■■□□ 2.13
HDDC2-201ENST00000318787 AQRO60306 1485 aaKnown RBP eCLIP28.36■■■□□ 2.137e-8■■■■■ 35.6
HDDC2-201ENST00000318787 OSCARQ8IYS5 282 aa28.33■■■□□ 2.13
HDDC2-201ENST00000318787 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.11
HDDC2-201ENST00000318787 CHD1O14646 1710 aa28.24■■■□□ 2.11
HDDC2-201ENST00000318787 WDR97A6NE52 1622 aa28.23■■■□□ 2.11
HDDC2-201ENST00000318787 WRNQ14191 1432 aaPredicted RBP eCLIP28.18■■■□□ 2.1
HDDC2-201ENST00000318787 TRIM41Q8WV44 630 aa28.18■■■□□ 2.1
HDDC2-201ENST00000318787 SYNJ1O43426 1573 aa28.18■■■□□ 2.1
HDDC2-201ENST00000318787 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
HDDC2-201ENST00000318787 FBLN2P98095 1184 aa28.17■■■□□ 2.1
HDDC2-201ENST00000318787 TOP2BQ02880 1626 aa28.16■■■□□ 2.1
HDDC2-201ENST00000318787 PBRM1Q86U86 1689 aa28.13■■■□□ 2.09
HDDC2-201ENST00000318787 SNAPC4Q5SXM2 1469 aa28.11■■■□□ 2.09
HDDC2-201ENST00000318787 ABCA10Q8WWZ4 1543 aa28.06■■■□□ 2.08
HDDC2-201ENST00000318787 GRIN2BQ13224 1484 aa28.06■■■□□ 2.08
HDDC2-201ENST00000318787 GAPVD1Q14C86 1478 aa28.05■■■□□ 2.08
HDDC2-201ENST00000318787 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
HDDC2-201ENST00000318787 MAGI1Q96QZ7 1491 aaPredicted RBP28■■■□□ 2.07
HDDC2-201ENST00000318787 CHMP7Q8WUX9 453 aaPredicted RBP27.96■■■□□ 2.07
HDDC2-201ENST00000318787 RIMBP3CA6NJZ7 1639 aa27.95■■■□□ 2.07
HDDC2-201ENST00000318787 RIMBP3BA6NNM3 1639 aa27.95■■■□□ 2.07
HDDC2-201ENST00000318787 RIMBP3Q9UFD9 1639 aa27.95■■■□□ 2.07
HDDC2-201ENST00000318787 SYNJ2O15056 1496 aa27.9■■■□□ 2.06
HDDC2-201ENST00000318787 ARHGEF11O15085 1522 aa27.87■■■□□ 2.05
HDDC2-201ENST00000318787 ADAMTS12P58397 1594 aa27.8■■■□□ 2.04
HDDC2-201ENST00000318787 CLASP1Q7Z460 1538 aa27.76■■■□□ 2.03
HDDC2-201ENST00000318787 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
HDDC2-201ENST00000318787 GRIN2AQ12879 1464 aa27.72■■■□□ 2.03
HDDC2-201ENST00000318787 CYB5RLQ6IPT4 315 aa27.69■■■□□ 2.02
HDDC2-201ENST00000318787 FHAD1B1AJZ9 1412 aa27.68■■■□□ 2.02
HDDC2-201ENST00000318787 CEP170Q5SW79 1584 aa27.62■■■□□ 2.01
HDDC2-201ENST00000318787 ARAP1Q96P48 1450 aa27.61■■■□□ 2.01
HDDC2-201ENST00000318787 KIF27Q86VH2 1401 aa27.6■■■□□ 2.01
HDDC2-201ENST00000318787 SENP3Q9H4L4 574 aaPredicted RBP27.58■■■□□ 2.01
HDDC2-201ENST00000318787 NUP160Q12769 1436 aa27.54■■■□□ 2
HDDC2-201ENST00000318787 CUL7Q14999 1698 aa27.52■■■□□ 2
HDDC2-201ENST00000318787 IGF1RP08069 1367 aa27.45■■□□□ 1.99
HDDC2-201ENST00000318787 ERCC6L2Q5T890 1561 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms