RNA–Protein interactions for RNA: ENST00000380815.4

GMDS-202, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GMDS, Length 1,752 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-202ENST00000380815 NISCHQ9Y2I1 1504 aa48.2■■■■■ 5.31
GMDS-202ENST00000380815 CCDC180Q9P1Z9 1646 aa41.91■■■■■ 4.3
GMDS-202ENST00000380815 ZCCHC6Q5VYS8 1495 aaKnown RBP40.54■■■■■ 4.08
GMDS-202ENST00000380815 DCAF1Q9Y4B6 1507 aa39.88■■■■□ 3.98
GMDS-202ENST00000380815 DCAF8L2P0C7V8 631 aa39.71■■■■□ 3.95
GMDS-202ENST00000380815 SHROOM4Q9ULL8 1493 aa39.43■■■■□ 3.9
GMDS-202ENST00000380815 ABCC9O60706 1549 aa39.42■■■■□ 3.9
GMDS-202ENST00000380815 MYO15BQ96JP2 1530 aa39.34■■■■□ 3.89
GMDS-202ENST00000380815 NACADO15069 1562 aa39■■■■□ 3.83
GMDS-202ENST00000380815 RB1CC1Q8TDY2 1594 aa38.6■■■■□ 3.77
GMDS-202ENST00000380815 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
GMDS-202ENST00000380815 SUPT5HO00267 1087 aaKnown RBP38.07■■■■□ 3.68
GMDS-202ENST00000380815 UNC13AQ9UPW8 1703 aa37.79■■■■□ 3.64
GMDS-202ENST00000380815 RSF1Q96T23 1441 aaPredicted RBP37.49■■■■□ 3.59
GMDS-202ENST00000380815 BICRAQ9NZM4 1560 aa37.44■■■■□ 3.58
GMDS-202ENST00000380815 CECR2Q9BXF3 1484 aa37.43■■■■□ 3.58
GMDS-202ENST00000380815 MROH2BQ7Z745 1585 aa37.24■■■■□ 3.55
GMDS-202ENST00000380815 PABPN1Q86U42 306 aaKnown RBP eCLIP37.23■■■■□ 3.55
GMDS-202ENST00000380815 BAZ1AQ9NRL2 1556 aaPredicted RBP37.2■■■■□ 3.55
GMDS-202ENST00000380815 SMARCA4P51532 1647 aa36.99■■■■□ 3.51
GMDS-202ENST00000380815 WIZO95785 1651 aa36.93■■■■□ 3.5
GMDS-202ENST00000380815 CHIC1Q5VXU3 224 aa36.59■■■■□ 3.45
GMDS-202ENST00000380815 TOP2AP11388 1531 aaKnown RBP36.57■■■■□ 3.45
GMDS-202ENST00000380815 PEG3Q9GZU2 1588 aa36.56■■■■□ 3.44
GMDS-202ENST00000380815 ATAD2BQ9ULI0 1458 aa36.35■■■■□ 3.41
GMDS-202ENST00000380815 SMARCA2P51531 1590 aa36.34■■■■□ 3.41
GMDS-202ENST00000380815 EIF4G1Q04637 1599 aaKnown RBP36.28■■■■□ 3.4
GMDS-202ENST00000380815 CCDC88BA6NC98 1476 aa36.21■■■■□ 3.39
GMDS-202ENST00000380815 BAZ1BQ9UIG0 1483 aaKnown RBP36.14■■■■□ 3.38
GMDS-202ENST00000380815 NCAPD3P42695 1498 aa36.02■■■■□ 3.36
GMDS-202ENST00000380815 HMGXB3Q12766 1538 aa35.97■■■■□ 3.35
GMDS-202ENST00000380815 TRIM41Q8WV44 630 aa35.81■■■■□ 3.32
GMDS-202ENST00000380815 CC2D2AQ9P2K1 1620 aa35.69■■■■□ 3.3
GMDS-202ENST00000380815 ABCC8Q09428 1581 aa35.49■■■■□ 3.27
GMDS-202ENST00000380815 WRNQ14191 1432 aaPredicted RBP eCLIP35.28■■■■□ 3.24
GMDS-202ENST00000380815 CFTRP13569 1480 aa35.27■■■■□ 3.24
GMDS-202ENST00000380815 LOC105371045A0A1W2PR82 267 aa35.18■■■■□ 3.22
GMDS-202ENST00000380815 FAM9AQ8IZU1 332 aaPredicted RBP35.12■■■■□ 3.21
GMDS-202ENST00000380815 CADPSQ9ULU8 1353 aa35.1■■■■□ 3.21
GMDS-202ENST00000380815 SYNJ1O43426 1573 aa35.1■■■■□ 3.21
GMDS-202ENST00000380815 PRDM2Q13029 1718 aa35.05■■■■□ 3.2
GMDS-202ENST00000380815 TOP2BQ02880 1626 aa34.95■■■■□ 3.19
GMDS-202ENST00000380815 EEA1Q15075 1411 aa34.9■■■■□ 3.18
GMDS-202ENST00000380815 BIVM-ERCC5R4GMW8 1640 aa34.9■■■■□ 3.18
GMDS-202ENST00000380815 SOGA1O94964 1423 aa34.9■■■■□ 3.18
GMDS-202ENST00000380815 CUX1P39880 1505 aa34.8■■■■□ 3.16
GMDS-202ENST00000380815 RUSC2Q8N2Y8 1516 aa34.74■■■■□ 3.15
GMDS-202ENST00000380815 LAMC3Q9Y6N6 1575 aa34.73■■■■□ 3.15
GMDS-202ENST00000380815 DNAJC5BQ9UF47 199 aa34.72■■■■□ 3.15
GMDS-202ENST00000380815 FANCD2Q9BXW9 1451 aa34.7■■■■□ 3.14
GMDS-202ENST00000380815 CSRNP3Q8WYN3 585 aa34.69■■■■□ 3.14
GMDS-202ENST00000380815 NESP48681 1621 aa34.68■■■■□ 3.14
GMDS-202ENST00000380815 EHMT2Q96KQ7 1210 aa34.59■■■■□ 3.13
GMDS-202ENST00000380815 PDS5BQ9NTI5 1447 aa34.47■■■■□ 3.11
GMDS-202ENST00000380815 CEP164Q9UPV0 1460 aa34.45■■■■□ 3.11
GMDS-202ENST00000380815 DNMBPQ6XZF7 1577 aa34.42■■■■□ 3.1
GMDS-202ENST00000380815 KIF21BO75037 1637 aa34.41■■■■□ 3.1
GMDS-202ENST00000380815 GOLGA3Q08378 1498 aa34.41■■■■□ 3.1
GMDS-202ENST00000380815 FGD5Q6ZNL6 1462 aa34.39■■■■□ 3.1
GMDS-202ENST00000380815 KIF27Q86VH2 1401 aa34.37■■■■□ 3.09
GMDS-202ENST00000380815 TNIKQ9UKE5 1360 aa34.36■■■■□ 3.09
GMDS-202ENST00000380815 TOPBP1Q92547 1522 aa34.35■■■■□ 3.09
GMDS-202ENST00000380815 UBTFP17480 764 aaKnown RBP34.25■■■■□ 3.07
GMDS-202ENST00000380815 KIF21AQ7Z4S6 1674 aa34.24■■■■□ 3.07
GMDS-202ENST00000380815 URB2Q14146 1524 aaKnown RBP34.24■■■■□ 3.07
GMDS-202ENST00000380815 CUX2O14529 1486 aa34.21■■■■□ 3.07
GMDS-202ENST00000380815 POLA1P09884 1462 aaPredicted RBP34.2■■■■□ 3.07
GMDS-202ENST00000380815 PRXQ9BXM0 1461 aa34.2■■■■□ 3.07
GMDS-202ENST00000380815 RAPGEF2Q9Y4G8 1499 aa34.18■■■■□ 3.06
GMDS-202ENST00000380815 CEP162Q5TB80 1403 aa34.18■■■■□ 3.06
GMDS-202ENST00000380815 ERICH3Q5RHP9 1530 aa34.16■■■■□ 3.06
GMDS-202ENST00000380815 ABCA10Q8WWZ4 1543 aa34.11■■■■□ 3.05
GMDS-202ENST00000380815 RAD54L2Q9Y4B4 1467 aa34.08■■■■□ 3.05
GMDS-202ENST00000380815 IGF1RP08069 1367 aa34.05■■■■□ 3.04
GMDS-202ENST00000380815 MRC2Q9UBG0 1479 aa34■■■■□ 3.03
GMDS-202ENST00000380815 WDR97A6NE52 1622 aa33.94■■■■□ 3.02
GMDS-202ENST00000380815 CARMIL1Q5VZK9 1371 aa33.88■■■■□ 3.01
GMDS-202ENST00000380815 CLIP1P30622 1438 aa33.87■■■■□ 3.01
GMDS-202ENST00000380815 WDR62O43379 1518 aa33.82■■■■□ 3
GMDS-202ENST00000380815 TARBP1Q13395 1621 aaKnown RBP33.81■■■■□ 3
GMDS-202ENST00000380815 PCGF6Q9BYE7 350 aa33.8■■■■□ 3
GMDS-202ENST00000380815 ABCA5Q8WWZ7 1642 aa33.79■■■■□ 3
GMDS-202ENST00000380815 ERCC6Q03468 1493 aa33.78■■■■□ 3
GMDS-202ENST00000380815 TRIM26Q12899 539 aaPredicted RBP33.78■■■■□ 3
GMDS-202ENST00000380815 CUL7Q14999 1698 aa33.74■■■□□ 2.99
GMDS-202ENST00000380815 TDRD9Q8NDG6 1382 aaKnown RBP33.74■■■□□ 2.99
GMDS-202ENST00000380815 GAPVD1Q14C86 1478 aa33.72■■■□□ 2.99
GMDS-202ENST00000380815 THOC2Q8NI27 1593 aaKnown RBP33.64■■■□□ 2.98
GMDS-202ENST00000380815 IFT140Q96RY7 1462 aa33.63■■■□□ 2.97
GMDS-202ENST00000380815 VPS8Q8N3P4 1428 aa33.61■■■□□ 2.97
GMDS-202ENST00000380815 RANGAP1P46060 587 aaPredicted RBP33.58■■■□□ 2.97
GMDS-202ENST00000380815 ARAP1Q96P48 1450 aa33.5■■■□□ 2.95
GMDS-202ENST00000380815 AQRO60306 1485 aaKnown RBP eCLIP33.49■■■□□ 2.952e-10■■■■■ 40.6
GMDS-202ENST00000380815 PBRM1Q86U86 1689 aa33.47■■■□□ 2.95
GMDS-202ENST00000380815 PPARGC1BQ86YN6 1023 aaKnown RBP33.47■■■□□ 2.95
GMDS-202ENST00000380815 ARHGAP35Q9NRY4 1499 aa33.46■■■□□ 2.95
GMDS-202ENST00000380815 GRIN2BQ13224 1484 aa33.43■■■□□ 2.94
GMDS-202ENST00000380815 ZNF608Q9ULD9 1512 aaPredicted RBP33.41■■■□□ 2.94
GMDS-202ENST00000380815 FHAD1B1AJZ9 1412 aa33.38■■■□□ 2.93
GMDS-202ENST00000380815 CTTNBP2Q8WZ74 1663 aa33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms