RNA–Protein interactions for RNA: ENST00000476972.6

GMDS-204, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

TSL 2

Gene GMDS, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-204ENST00000476972 NISCHQ9Y2I1 1504 aa47■■■■■ 5.12
GMDS-204ENST00000476972 ABCC9O60706 1549 aa42.38■■■■■ 4.37
GMDS-204ENST00000476972 CCDC180Q9P1Z9 1646 aa42.01■■■■■ 4.32
GMDS-204ENST00000476972 RB1CC1Q8TDY2 1594 aa40.17■■■■■ 4.02
GMDS-204ENST00000476972 DNAJC5BQ9UF47 199 aa39.99■■■■□ 3.99
GMDS-204ENST00000476972 DCAF8L2P0C7V8 631 aa39.96■■■■□ 3.99
GMDS-204ENST00000476972 NACADO15069 1562 aa39.89■■■■□ 3.98
GMDS-204ENST00000476972 PABPN1Q86U42 306 aaKnown RBP eCLIP39.58■■■■□ 3.93
GMDS-204ENST00000476972 MYO15BQ96JP2 1530 aa39.3■■■■□ 3.88
GMDS-204ENST00000476972 UNC13AQ9UPW8 1703 aa39.06■■■■□ 3.84
GMDS-204ENST00000476972 ZCCHC6Q5VYS8 1495 aaKnown RBP39.03■■■■□ 3.84
GMDS-204ENST00000476972 BICRAQ9NZM4 1560 aa39.02■■■■□ 3.84
GMDS-204ENST00000476972 DCAF1Q9Y4B6 1507 aa38.78■■■■□ 3.8
GMDS-204ENST00000476972 SHROOM4Q9ULL8 1493 aa38.44■■■■□ 3.74
GMDS-204ENST00000476972 SCRIBQ14160 1630 aa38.4■■■■□ 3.74
GMDS-204ENST00000476972 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
GMDS-204ENST00000476972 CC2D2AQ9P2K1 1620 aa38.16■■■■□ 3.7
GMDS-204ENST00000476972 EIF4G1Q04637 1599 aaKnown RBP38.07■■■■□ 3.69
GMDS-204ENST00000476972 NCAPD3P42695 1498 aa36.93■■■■□ 3.5
GMDS-204ENST00000476972 ATAD2BQ9ULI0 1458 aa36.79■■■■□ 3.48
GMDS-204ENST00000476972 DNAJC5Q9H3Z4 198 aa36.77■■■■□ 3.48
GMDS-204ENST00000476972 SMARCA4P51532 1647 aa36.59■■■■□ 3.45
GMDS-204ENST00000476972 SMARCA2P51531 1590 aa36.59■■■■□ 3.45
GMDS-204ENST00000476972 ERCC6Q03468 1493 aa36.57■■■■□ 3.45
GMDS-204ENST00000476972 HMGXB3Q12766 1538 aa36.51■■■■□ 3.44
GMDS-204ENST00000476972 CUX2O14529 1486 aa36.49■■■■□ 3.43
GMDS-204ENST00000476972 BAZ1AQ9NRL2 1556 aaPredicted RBP36.44■■■■□ 3.42
GMDS-204ENST00000476972 BAZ1BQ9UIG0 1483 aaKnown RBP36.39■■■■□ 3.42
GMDS-204ENST00000476972 NESP48681 1621 aa36.37■■■■□ 3.41
GMDS-204ENST00000476972 PEG3Q9GZU2 1588 aa36.25■■■■□ 3.39
GMDS-204ENST00000476972 MROH2BQ7Z745 1585 aa36.23■■■■□ 3.39
GMDS-204ENST00000476972 LAMC3Q9Y6N6 1575 aa35.98■■■■□ 3.35
GMDS-204ENST00000476972 PDS5BQ9NTI5 1447 aa35.91■■■■□ 3.34
GMDS-204ENST00000476972 THOC2Q8NI27 1593 aaKnown RBP35.86■■■■□ 3.33
GMDS-204ENST00000476972 CADPSQ9ULU8 1353 aa35.84■■■■□ 3.33
GMDS-204ENST00000476972 WIZO95785 1651 aa35.76■■■■□ 3.32
GMDS-204ENST00000476972 KIF21AQ7Z4S6 1674 aa35.69■■■■□ 3.3
GMDS-204ENST00000476972 RSF1Q96T23 1441 aaPredicted RBP35.59■■■■□ 3.29
GMDS-204ENST00000476972 MRC2Q9UBG0 1479 aa35.55■■■■□ 3.28
GMDS-204ENST00000476972 WDR62O43379 1518 aa35.41■■■■□ 3.26
GMDS-204ENST00000476972 CEP164Q9UPV0 1460 aa35.38■■■■□ 3.25
GMDS-204ENST00000476972 FANCD2Q9BXW9 1451 aa35.37■■■■□ 3.25
GMDS-204ENST00000476972 TOP2AP11388 1531 aaKnown RBP35.36■■■■□ 3.25
GMDS-204ENST00000476972 CFTRP13569 1480 aa35.35■■■■□ 3.25
GMDS-204ENST00000476972 TRIM41Q8WV44 630 aa35.14■■■■□ 3.22
GMDS-204ENST00000476972 URB2Q14146 1524 aaKnown RBP35.07■■■■□ 3.21
GMDS-204ENST00000476972 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
GMDS-204ENST00000476972 CCDC88BA6NC98 1476 aa34.98■■■■□ 3.19
GMDS-204ENST00000476972 PRDM2Q13029 1718 aa34.79■■■■□ 3.16
GMDS-204ENST00000476972 IFT140Q96RY7 1462 aa34.71■■■■□ 3.15
GMDS-204ENST00000476972 ZNF608Q9ULD9 1512 aaPredicted RBP34.69■■■■□ 3.14
GMDS-204ENST00000476972 TOPBP1Q92547 1522 aa34.66■■■■□ 3.14
GMDS-204ENST00000476972 ABCC8Q09428 1581 aa34.57■■■■□ 3.13
GMDS-204ENST00000476972 DNMBPQ6XZF7 1577 aa34.46■■■■□ 3.11
GMDS-204ENST00000476972 SUPT5HO00267 1087 aaKnown RBP34.43■■■■□ 3.1
GMDS-204ENST00000476972 AQRO60306 1485 aaKnown RBP eCLIP34.41■■■■□ 3.1
GMDS-204ENST00000476972 EIF4G3O43432 1585 aaKnown RBP34.34■■■■□ 3.09
GMDS-204ENST00000476972 POLA1P09884 1462 aaPredicted RBP34.32■■■■□ 3.08
GMDS-204ENST00000476972 RIMBP3CA6NJZ7 1639 aa34.31■■■■□ 3.08
GMDS-204ENST00000476972 RIMBP3BA6NNM3 1639 aa34.31■■■■□ 3.08
GMDS-204ENST00000476972 RIMBP3Q9UFD9 1639 aa34.31■■■■□ 3.08
GMDS-204ENST00000476972 TARBP1Q13395 1621 aaKnown RBP34.3■■■■□ 3.08
GMDS-204ENST00000476972 FBLN2P98095 1184 aa34.29■■■■□ 3.08
GMDS-204ENST00000476972 ARHGEF11O15085 1522 aa34.26■■■■□ 3.08
GMDS-204ENST00000476972 RAD54L2Q9Y4B4 1467 aa34.25■■■■□ 3.07
GMDS-204ENST00000476972 SOGA1O94964 1423 aa34.24■■■■□ 3.07
GMDS-204ENST00000476972 TDRD9Q8NDG6 1382 aaKnown RBP34.23■■■■□ 3.07
GMDS-204ENST00000476972 CYB5RLQ6IPT4 315 aa34.21■■■■□ 3.07
GMDS-204ENST00000476972 FGD5Q6ZNL6 1462 aa34.08■■■■□ 3.05
GMDS-204ENST00000476972 CHD1O14646 1710 aa34.03■■■■□ 3.04
GMDS-204ENST00000476972 CUX1P39880 1505 aa34.03■■■■□ 3.04
GMDS-204ENST00000476972 CHMP7Q8WUX9 453 aaPredicted RBP34■■■■□ 3.03
GMDS-204ENST00000476972 SNAPC4Q5SXM2 1469 aa33.97■■■■□ 3.03
GMDS-204ENST00000476972 ARAP1Q96P48 1450 aa33.94■■■■□ 3.02
GMDS-204ENST00000476972 GRIN2BQ13224 1484 aa33.89■■■■□ 3.02
GMDS-204ENST00000476972 WDR97A6NE52 1622 aa33.87■■■■□ 3.01
GMDS-204ENST00000476972 MAGI1Q96QZ7 1491 aaPredicted RBP33.85■■■■□ 3.01
GMDS-204ENST00000476972 TRHP20396 242 aaPredicted RBP33.85■■■■□ 3.01
GMDS-204ENST00000476972 SYNJ2O15056 1496 aa33.77■■■■□ 3
GMDS-204ENST00000476972 GAPVD1Q14C86 1478 aa33.76■■■■□ 3
GMDS-204ENST00000476972 CLASP1Q7Z460 1538 aa33.76■■■■□ 3
GMDS-204ENST00000476972 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
GMDS-204ENST00000476972 ABCA10Q8WWZ4 1543 aa33.69■■■□□ 2.98
GMDS-204ENST00000476972 WRNQ14191 1432 aaPredicted RBP eCLIP33.6■■■□□ 2.97
GMDS-204ENST00000476972 BIVM-ERCC5R4GMW8 1640 aa33.59■■■□□ 2.97
GMDS-204ENST00000476972 TOP2BQ02880 1626 aa33.57■■■□□ 2.96
GMDS-204ENST00000476972 ABCA5Q8WWZ7 1642 aa33.53■■■□□ 2.96
GMDS-204ENST00000476972 PBRM1Q86U86 1689 aa33.52■■■□□ 2.96
GMDS-204ENST00000476972 GRIN2AQ12879 1464 aa33.43■■■□□ 2.94
GMDS-204ENST00000476972 FHAD1B1AJZ9 1412 aa33.34■■■□□ 2.93
GMDS-204ENST00000476972 NUP160Q12769 1436 aa33.34■■■□□ 2.93
GMDS-204ENST00000476972 ADAMTS12P58397 1594 aa33.3■■■□□ 2.92
GMDS-204ENST00000476972 ERCC6L2Q5T890 1561 aa33.28■■■□□ 2.92
GMDS-204ENST00000476972 CEP170Q5SW79 1584 aa33.26■■■□□ 2.92
GMDS-204ENST00000476972 ERICH3Q5RHP9 1530 aa33.23■■■□□ 2.91
GMDS-204ENST00000476972 JPH4Q96JJ6 628 aa33.13■■■□□ 2.89
GMDS-204ENST00000476972 PRG4Q92954 1404 aaPredicted RBP33.09■■■□□ 2.89
GMDS-204ENST00000476972 SHROOM2Q13796 1616 aa33.07■■■□□ 2.88
GMDS-204ENST00000476972 IGF1RP08069 1367 aa32.95■■■□□ 2.86
GMDS-204ENST00000476972 AEBP2Q6ZN18 517 aaPredicted RBP32.92■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms