RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 NISCHQ9Y2I1 1504 aa36.96■■■■□ 3.51
PTP4A3-202ENST00000349124 SHROOM4Q9ULL8 1493 aa32.06■■■□□ 2.72
PTP4A3-202ENST00000349124 SUPT5HO00267 1087 aaKnown RBP31.53■■■□□ 2.64
PTP4A3-202ENST00000349124 ZCCHC6Q5VYS8 1495 aaKnown RBP31.24■■■□□ 2.59
PTP4A3-202ENST00000349124 DCAF8L2P0C7V8 631 aa31.11■■■□□ 2.57
PTP4A3-202ENST00000349124 CCDC180Q9P1Z9 1646 aa31.02■■■□□ 2.56
PTP4A3-202ENST00000349124 CHIC1Q5VXU3 224 aa30.6■■■□□ 2.49
PTP4A3-202ENST00000349124 MYO15BQ96JP2 1530 aa30.49■■■□□ 2.47
PTP4A3-202ENST00000349124 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
PTP4A3-202ENST00000349124 PCGF6Q9BYE7 350 aa29.93■■■□□ 2.38
PTP4A3-202ENST00000349124 LOC105371045A0A1W2PR82 267 aa29.89■■■□□ 2.38
PTP4A3-202ENST00000349124 HRCP23327 699 aa29.87■■■□□ 2.37
PTP4A3-202ENST00000349124 PPARGC1BQ86YN6 1023 aaKnown RBP29.5■■■□□ 2.31
PTP4A3-202ENST00000349124 SCRIBQ14160 1630 aa29.48■■■□□ 2.31
PTP4A3-202ENST00000349124 ABCC9O60706 1549 aa29.44■■■□□ 2.3
PTP4A3-202ENST00000349124 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
PTP4A3-202ENST00000349124 TRIM41Q8WV44 630 aa29.22■■■□□ 2.27
PTP4A3-202ENST00000349124 FAM9AQ8IZU1 332 aaPredicted RBP29.2■■■□□ 2.27
PTP4A3-202ENST00000349124 TRIM26Q12899 539 aaPredicted RBP29.13■■■□□ 2.25
PTP4A3-202ENST00000349124 EHMT2Q96KQ7 1210 aa29.1■■■□□ 2.25
PTP4A3-202ENST00000349124 RB1CC1Q8TDY2 1594 aa29.08■■■□□ 2.25
PTP4A3-202ENST00000349124 CECR2Q9BXF3 1484 aa29.02■■■□□ 2.24
PTP4A3-202ENST00000349124 MROH2BQ7Z745 1585 aa28.85■■■□□ 2.21
PTP4A3-202ENST00000349124 NACADO15069 1562 aa28.79■■■□□ 2.2
PTP4A3-202ENST00000349124 WIZO95785 1651 aa28.65■■■□□ 2.18
PTP4A3-202ENST00000349124 ZEB1P37275 1124 aaPredicted RBP28.4■■■□□ 2.14
PTP4A3-202ENST00000349124 BAZ1AQ9NRL2 1556 aaPredicted RBP28.31■■■□□ 2.12
PTP4A3-202ENST00000349124 EIF4G1Q04637 1599 aaKnown RBP28.17■■■□□ 2.1
PTP4A3-202ENST00000349124 ABCC8Q09428 1581 aa28.17■■■□□ 2.1
PTP4A3-202ENST00000349124 CCDC88BA6NC98 1476 aa28.15■■■□□ 2.1
PTP4A3-202ENST00000349124 TTBK1Q5TCY1 1321 aaPredicted RBP28.15■■■□□ 2.1
PTP4A3-202ENST00000349124 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.14■■■□□ 2.1
PTP4A3-202ENST00000349124 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
PTP4A3-202ENST00000349124 TOP2AP11388 1531 aaKnown RBP28.07■■■□□ 2.08
PTP4A3-202ENST00000349124 SMARCA4P51532 1647 aa28.04■■■□□ 2.08
PTP4A3-202ENST00000349124 SOGA1O94964 1423 aa28.02■■■□□ 2.08
PTP4A3-202ENST00000349124 SMARCA2P51531 1590 aa27.99■■■□□ 2.07
PTP4A3-202ENST00000349124 CCER1Q8TC90 406 aaPredicted RBP27.97■■■□□ 2.07
PTP4A3-202ENST00000349124 RUSC2Q8N2Y8 1516 aa27.9■■■□□ 2.06
PTP4A3-202ENST00000349124 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
PTP4A3-202ENST00000349124 CSRNP3Q8WYN3 585 aa27.86■■■□□ 2.05
PTP4A3-202ENST00000349124 UBTFP17480 764 aaKnown RBP27.85■■■□□ 2.05
PTP4A3-202ENST00000349124 CEP162Q5TB80 1403 aa27.85■■■□□ 2.05
PTP4A3-202ENST00000349124 TNIKQ9UKE5 1360 aa27.75■■■□□ 2.03
PTP4A3-202ENST00000349124 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.035e-7■■□□□ 14.4
PTP4A3-202ENST00000349124 SCAF1Q9H7N4 1312 aaKnown RBP27.72■■■□□ 2.03
PTP4A3-202ENST00000349124 BICRAQ9NZM4 1560 aa27.66■■■□□ 2.02
PTP4A3-202ENST00000349124 EEA1Q15075 1411 aa27.57■■■□□ 2
PTP4A3-202ENST00000349124 GOLGA3Q08378 1498 aa27.5■■□□□ 1.99
PTP4A3-202ENST00000349124 RANGAP1P46060 587 aaPredicted RBP27.48■■□□□ 1.99
PTP4A3-202ENST00000349124 DIEXFQ68CQ4 756 aaKnown RBP27.48■■□□□ 1.99
PTP4A3-202ENST00000349124 SYNJ1O43426 1573 aa27.43■■□□□ 1.98
PTP4A3-202ENST00000349124 ATAD2BQ9ULI0 1458 aa27.41■■□□□ 1.98
PTP4A3-202ENST00000349124 HNRNPUL2Q1KMD3 747 aaKnown RBP27.41■■□□□ 1.98
PTP4A3-202ENST00000349124 PEG3Q9GZU2 1588 aa27.39■■□□□ 1.98
PTP4A3-202ENST00000349124 NEUROD1Q13562 356 aa27.39■■□□□ 1.97
PTP4A3-202ENST00000349124 BAZ1BQ9UIG0 1483 aaKnown RBP27.32■■□□□ 1.96
PTP4A3-202ENST00000349124 CEP164Q9UPV0 1460 aa27.32■■□□□ 1.96
PTP4A3-202ENST00000349124 ACIN1Q9UKV3 1341 aaKnown RBP27.32■■□□□ 1.96
PTP4A3-202ENST00000349124 CLIP1P30622 1438 aa27.3■■□□□ 1.96
PTP4A3-202ENST00000349124 RAPGEF2Q9Y4G8 1499 aa27.26■■□□□ 1.95
PTP4A3-202ENST00000349124 ZNF316A6NFI3 1004 aaPredicted RBP27.19■■□□□ 1.94
PTP4A3-202ENST00000349124 KIF21BO75037 1637 aa27.16■■□□□ 1.94
PTP4A3-202ENST00000349124 APLP2Q06481 763 aa27.15■■□□□ 1.94
PTP4A3-202ENST00000349124 VPS8Q8N3P4 1428 aa27.14■■□□□ 1.94
PTP4A3-202ENST00000349124 GTF3C3Q9Y5Q9 886 aa27.1■■□□□ 1.93
PTP4A3-202ENST00000349124 CENPBP07199 599 aaPredicted RBP27.03■■□□□ 1.92
PTP4A3-202ENST00000349124 YTHDC1Q96MU7 727 aaKnown RBP26.99■■□□□ 1.91
PTP4A3-202ENST00000349124 TOP2BQ02880 1626 aa26.96■■□□□ 1.91
PTP4A3-202ENST00000349124 MIER1Q8N108 512 aa26.96■■□□□ 1.91
PTP4A3-202ENST00000349124 KANK4Q5T7N3 995 aaPredicted RBP26.94■■□□□ 1.9
PTP4A3-202ENST00000349124 PELP1Q8IZL8 1130 aaKnown RBP26.93■■□□□ 1.9
PTP4A3-202ENST00000349124 PRXQ9BXM0 1461 aa26.86■■□□□ 1.89
PTP4A3-202ENST00000349124 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
PTP4A3-202ENST00000349124 CUX1P39880 1505 aa26.8■■□□□ 1.88
PTP4A3-202ENST00000349124 NCAPD3P42695 1498 aa26.78■■□□□ 1.88
PTP4A3-202ENST00000349124 BIVM-ERCC5R4GMW8 1640 aa26.78■■□□□ 1.88
PTP4A3-202ENST00000349124 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
PTP4A3-202ENST00000349124 ERICH3Q5RHP9 1530 aa26.71■■□□□ 1.87
PTP4A3-202ENST00000349124 DHX57Q6P158 1386 aaKnown RBP26.69■■□□□ 1.86
PTP4A3-202ENST00000349124 ITGAEP38570 1179 aa26.67■■□□□ 1.86
PTP4A3-202ENST00000349124 HMGXB3Q12766 1538 aa26.64■■□□□ 1.86
PTP4A3-202ENST00000349124 CFTRP13569 1480 aa26.64■■□□□ 1.85
PTP4A3-202ENST00000349124 ARHGAP35Q9NRY4 1499 aa26.57■■□□□ 1.84
PTP4A3-202ENST00000349124 IGF1RP08069 1367 aa26.53■■□□□ 1.84
PTP4A3-202ENST00000349124 RRBP1Q9P2E9 1410 aaKnown RBP26.51■■□□□ 1.83
PTP4A3-202ENST00000349124 CLSPNQ9HAW4 1339 aa26.5■■□□□ 1.83
PTP4A3-202ENST00000349124 CUX2O14529 1486 aa26.5■■□□□ 1.83
PTP4A3-202ENST00000349124 CCNB3Q8WWL7 1395 aa26.48■■□□□ 1.83
PTP4A3-202ENST00000349124 P3H3Q8IVL6 736 aa26.44■■□□□ 1.82
PTP4A3-202ENST00000349124 CARMIL1Q5VZK9 1371 aa26.39■■□□□ 1.82
PTP4A3-202ENST00000349124 CADPSQ9ULU8 1353 aa26.38■■□□□ 1.81
PTP4A3-202ENST00000349124 ATP1B4Q9UN42 357 aaPredicted RBP26.36■■□□□ 1.81
PTP4A3-202ENST00000349124 RAB3GAP2Q9H2M9 1393 aa26.32■■□□□ 1.8
PTP4A3-202ENST00000349124 FGD5Q6ZNL6 1462 aa26.31■■□□□ 1.8
PTP4A3-202ENST00000349124 FAM50AQ14320 339 aaKnown RBP26.28■■□□□ 1.8
PTP4A3-202ENST00000349124 PHLDB1Q86UU1 1377 aa26.25■■□□□ 1.79
PTP4A3-202ENST00000349124 SIN3AQ96ST3 1273 aa26.22■■□□□ 1.79
PTP4A3-202ENST00000349124 KCNH8Q96L42 1107 aa26.19■■□□□ 1.78
PTP4A3-202ENST00000349124 TIAM1Q13009 1591 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms