Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 DLD-201ENST00000205402 3755 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.691e-6■■■■□ 25.5
RPS3P23396 DLD-205ENST00000440410 1993 ntTSL 2 BASIC7.11□□□□□ -1.271e-6■■■■□ 25.5
RPS3P23396 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.49□□□□□ -1.691e-6■■■■□ 25.5
RPS3P23396 DLD-203ENST00000417551 2041 ntTSL 53.75□□□□□ -1.811e-6■■■■□ 25.5
RPS3P23396 FERMT3-208ENST00000545896 911 ntTSL 517.23■□□□□ 0.355e-8■■■■□ 25.5
RPS3P23396 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.261e-7■■■■□ 25.5
RPS3P23396 CKB-204ENST00000553652 1239 ntTSL 517.52■□□□□ 0.41e-7■■■■□ 25.5
RPS3P23396 EIF4A1-228ENST00000583389 951 ntTSL 314.35□□□□□ -0.111e-8■■■■□ 25.5
RPS3P23396 VARS-220ENST00000461874 845 ntTSL 518.28■□□□□ 0.527e-10■■■■□ 25.5
RPS3P23396 VARS-216ENST00000428445 863 ntTSL 515.71■□□□□ 0.117e-10■■■■□ 25.5
RPS3P23396 THRAP3-203ENST00000469141 3339 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.463e-7■■■■□ 25.5
RPS3P23396 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.63e-7■■■■□ 25.5
RPS3P23396 PHGDH-212ENST00000641247 710 nt8.95□□□□□ -0.986e-8■■■■□ 25.5
RPS3P23396 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.018e-7■■■■□ 25.5
RPS3P23396 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.168e-7■■■■□ 25.5
RPS3P23396 P4HA2-204ENST00000379100 2563 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.568e-7■■■■□ 25.5
RPS3P23396 P4HA2-205ENST00000379104 2569 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.568e-7■■■■□ 25.5
RPS3P23396 P4HA2-203ENST00000379086 2223 ntAPPRIS ALT1 TSL 5 BASIC10.44□□□□□ -0.748e-7■■■■□ 25.5
RPS3P23396 P4HA2-207ENST00000401867 3349 ntAPPRIS P3 TSL 5 BASIC10□□□□□ -0.818e-7■■■■□ 25.5
RPS3P23396 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.098e-7■■■■□ 25.5
RPS3P23396 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC13.63□□□□□ -0.238e-7■■■■□ 25.5
RPS3P23396 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.54□□□□□ -0.248e-7■■■■□ 25.5
RPS3P23396 ANXA5-203ENST00000506395 1606 ntTSL 512.05□□□□□ -0.488e-7■■■■□ 25.5
RPS3P23396 EFTUD2-203ENST00000585616 575 ntTSL 411.64□□□□□ -0.552e-8■■■■□ 25.5
RPS3P23396 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.788e-9■■■■□ 25.4
RPS3P23396 LDHA-224ENST00000545467 570 ntTSL 27.81□□□□□ -1.163e-15■■■■□ 25.4
RPS3P23396 LDHA-217ENST00000539814 556 ntTSL 47.65□□□□□ -1.183e-15■■■■□ 25.4
RPS3P23396 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.32■□□□□ 0.685e-9■■■■□ 25.4
RPS3P23396 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.024e-7■■■■□ 25.4
RPS3P23396 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.333e-10■■■■□ 25.4
RPS3P23396 WBP2-214ENST00000590450 573 ntTSL 413.06□□□□□ -0.321e-6■■■■□ 25.4
RPS3P23396 WBP2-212ENST00000589834 591 ntTSL 212.12□□□□□ -0.471e-6■■■■□ 25.4
RPS3P23396 EFTUD2-202ENST00000426333 4548 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.712e-7■■■■□ 25.4
RPS3P23396 EFTUD2-223ENST00000592576 3364 ntTSL 2 BASIC9.04□□□□□ -0.962e-7■■■■□ 25.4
RPS3P23396 EFTUD2-201ENST00000402521 3045 ntTSL 2 BASIC8.88□□□□□ -0.992e-7■■■■□ 25.4
RPS3P23396 EFTUD2-218ENST00000590367 3638 ntTSL 27.64□□□□□ -1.192e-7■■■■□ 25.4
RPS3P23396 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.222e-7■■■■□ 25.4
RPS3P23396 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.11e-7■■■■□ 25.4
RPS3P23396 TKFC-210ENST00000529479 1781 ntTSL 1 (best)19.8■□□□□ 0.762e-7■■■■□ 25.4
RPS3P23396 ZNHIT1-204ENST00000492315 3958 ntTSL 29□□□□□ -0.971e-12■■■■□ 25.4
RPS3P23396 UPF1-209ENST00000600310 750 ntTSL 419.01■□□□□ 0.632e-7■■■■□ 25.4
RPS3P23396 UPF1-206ENST00000598471 582 ntTSL 315.32■□□□□ 0.042e-7■■■■□ 25.4
RPS3P23396 UPF1-211ENST00000600868 580 ntTSL 314.2□□□□□ -0.142e-7■■■■□ 25.4
RPS3P23396 UPF1-205ENST00000598209 551 ntTSL 413.51□□□□□ -0.252e-7■■■■□ 25.4
RPS3P23396 UPF1-208ENST00000600012 501 ntTSL 512.39□□□□□ -0.432e-7■■■■□ 25.4
RPS3P23396 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.73■□□□□ 0.275e-8■■■■□ 25.4
RPS3P23396 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.15e-8■■■■□ 25.4
RPS3P23396 STEAP3-201ENST00000393106 3915 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.865e-8■■■■□ 25.4
RPS3P23396 STEAP3-203ENST00000393110 4262 ntTSL 1 (best) BASIC9.55□□□□□ -0.885e-8■■■■□ 25.4
RPS3P23396 SEC61G-207ENST00000480303 661 ntTSL 1 (best)8.54□□□□□ -1.042e-7■■■■□ 25.4
RPS3P23396 SEC61G-206ENST00000461536 437 ntTSL 24.34□□□□□ -1.712e-7■■■■□ 25.4
RPS3P23396 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.432e-6■■■■□ 25.4
RPS3P23396 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.94■□□□□ 0.142e-6■■■■□ 25.4
RPS3P23396 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.15■□□□□ 0.022e-6■■■■□ 25.4
RPS3P23396 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.92□□□□□ -0.182e-6■■■■□ 25.4
RPS3P23396 ANXA6-203ENST00000517486 562 ntTSL 512.62□□□□□ -0.392e-6■■■■□ 25.4
RPS3P23396 COMMD4-213ENST00000565834 1671 ntTSL 518.58■□□□□ 0.579e-8■■■■□ 25.4
RPS3P23396 COMMD4-208ENST00000563220 1897 ntTSL 217.9■□□□□ 0.469e-8■■■■□ 25.4
RPS3P23396 COMMD4-206ENST00000562610 850 ntTSL 315.7■□□□□ 0.19e-8■■■■□ 25.4
RPS3P23396 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.7■□□□□ 0.19e-8■■■■□ 25.4
RPS3P23396 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.3■□□□□ 0.049e-8■■■■□ 25.4
RPS3P23396 COMMD4-215ENST00000566843 2284 ntTSL 215.2■□□□□ 0.029e-8■■■■□ 25.4
RPS3P23396 COMMD4-221ENST00000567935 502 ntTSL 314.5□□□□□ -0.099e-8■■■■□ 25.4
RPS3P23396 COMMD4-225ENST00000569245 867 ntTSL 214□□□□□ -0.179e-8■■■■□ 25.4
RPS3P23396 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.249e-8■■■■□ 25.4
RPS3P23396 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.55□□□□□ -0.249e-8■■■■□ 25.4
RPS3P23396 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.55□□□□□ -0.249e-8■■■■□ 25.4
RPS3P23396 COMMD4-209ENST00000564068 4204 nt12.28□□□□□ -0.449e-8■■■■□ 25.4
RPS3P23396 COMMD4-203ENST00000480484 3225 ntTSL 1 (best)9.68□□□□□ -0.869e-8■■■■□ 25.4
RPS3P23396 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.382e-7■■■■□ 25.4
RPS3P23396 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.72e-7■■■■□ 25.4
RPS3P23396 ILVBL-203ENST00000525880 687 ntTSL 213.74□□□□□ -0.215e-11■■■■□ 25.4
RPS3P23396 ILVBL-211ENST00000596093 576 ntTSL 211.04□□□□□ -0.645e-11■■■■□ 25.4
RPS3P23396 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.112e-7■■■■□ 25.4
RPS3P23396 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.95□□□□□ -0.181e-6■■■■□ 25.4
RPS3P23396 PHGDH-224ENST00000641711 712 nt10.07□□□□□ -0.89e-8■■■■□ 25.4
RPS3P23396 TUBB4B-202ENST00000604929 2035 ntTSL 1 (best)18.98■□□□□ 0.634e-11■■■■□ 25.4
RPS3P23396 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -04e-11■■■■□ 25.4
RPS3P23396 COPE-208ENST00000598969 1770 ntTSL 520.67■□□□□ 0.96e-8■■■■□ 25.3
RPS3P23396 TUBB-205ENST00000327892 2670 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.866e-15■■■■□ 25.3
RPS3P23396 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.64■■□□□ 1.227e-7■■■■□ 25.3
RPS3P23396 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.4■■□□□ 1.187e-7■■■■□ 25.3
RPS3P23396 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.177e-7■■■■□ 25.3
RPS3P23396 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.69■■□□□ 1.067e-7■■■■□ 25.3
RPS3P23396 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 12e-10■■■■□ 25.3
RPS3P23396 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.01■□□□□ 0.951e-11■■■■□ 25.3
RPS3P23396 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.82■□□□□ 0.921e-11■■■■□ 25.3
RPS3P23396 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.881e-11■■■■□ 25.3
RPS3P23396 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.852e-10■■■■□ 25.3
RPS3P23396 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.827e-7■■■■□ 25.3
RPS3P23396 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.15■□□□□ 0.821e-11■■■■□ 25.3
RPS3P23396 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.14■□□□□ 0.817e-7■■■■□ 25.3
RPS3P23396 AAMP-207ENST00000465442 1016 ntTSL 219.84■□□□□ 0.771e-8■■■■□ 25.3
RPS3P23396 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.67■□□□□ 0.747e-7■■■■□ 25.3
RPS3P23396 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.677e-7■■■■□ 25.3
RPS3P23396 USP22-209ENST00000579645 1906 ntTSL 519.25■□□□□ 0.671e-11■■■■□ 25.3
RPS3P23396 ORAI3-203ENST00000563161 976 ntTSL 319.01■□□□□ 0.631e-11■■■■□ 25.3
RPS3P23396 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.637e-7■■■■□ 25.3
RPS3P23396 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.542e-7■■■■□ 25.3
RPS3P23396 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.22■□□□□ 0.517e-7■■■■□ 25.3
Retrieved 100 of 24,271 protein–RNA pairs in 216.5 ms