RNA–Protein interactions for RNA: ENST00000545467.5

LDHA-224, Transcript of lactate dehydrogenase A, humanhuman

TSL 2

Gene LDHA, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-224ENST00000545467 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
LDHA-224ENST00000545467 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
LDHA-224ENST00000545467 ABCC9O60706 1549 aa17.88■□□□□ 0.45
LDHA-224ENST00000545467 DNAJC5BQ9UF47 199 aa17.43■□□□□ 0.38
LDHA-224ENST00000545467 CHIC1Q5VXU3 224 aa17.3■□□□□ 0.36
LDHA-224ENST00000545467 CCDC180Q9P1Z9 1646 aa17.19■□□□□ 0.34
LDHA-224ENST00000545467 RB1CC1Q8TDY2 1594 aa16.72■□□□□ 0.27
LDHA-224ENST00000545467 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
LDHA-224ENST00000545467 DNAJC5Q9H3Z4 198 aa16.55■□□□□ 0.24
LDHA-224ENST00000545467 NACADO15069 1562 aa16.47■□□□□ 0.23
LDHA-224ENST00000545467 UNC13AQ9UPW8 1703 aa16.27■□□□□ 0.19
LDHA-224ENST00000545467 DCAF8L2P0C7V8 631 aa16.25■□□□□ 0.19
LDHA-224ENST00000545467 BICRAQ9NZM4 1560 aa16.24■□□□□ 0.19
LDHA-224ENST00000545467 CECR2Q9BXF3 1484 aa16.2■□□□□ 0.18
LDHA-224ENST00000545467 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
LDHA-224ENST00000545467 MYO15BQ96JP2 1530 aa16.05■□□□□ 0.16
LDHA-224ENST00000545467 SHROOM4Q9ULL8 1493 aa16.02■□□□□ 0.15
LDHA-224ENST00000545467 EIF4G1Q04637 1599 aaKnown RBP15.91■□□□□ 0.14
LDHA-224ENST00000545467 SENP3Q9H4L4 574 aaPredicted RBP15.85■□□□□ 0.13
LDHA-224ENST00000545467 CUX2O14529 1486 aa15.73■□□□□ 0.11
LDHA-224ENST00000545467 SCRIBQ14160 1630 aa15.61■□□□□ 0.09
LDHA-224ENST00000545467 DCAF1Q9Y4B6 1507 aa15.58■□□□□ 0.08
LDHA-224ENST00000545467 PHF23Q9BUL5 403 aaPredicted RBP15.56■□□□□ 0.08
LDHA-224ENST00000545467 ERCC6Q03468 1493 aa15.5■□□□□ 0.07
LDHA-224ENST00000545467 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
LDHA-224ENST00000545467 ZCCHC6Q5VYS8 1495 aaKnown RBP15.47■□□□□ 0.07
LDHA-224ENST00000545467 NCAPD3P42695 1498 aa15.24■□□□□ 0.03
LDHA-224ENST00000545467 NESP48681 1621 aa15.15■□□□□ 0.02
LDHA-224ENST00000545467 THOC2Q8NI27 1593 aaKnown RBP15.11■□□□□ 0.01
LDHA-224ENST00000545467 ATAD2BQ9ULI0 1458 aa15.07■□□□□ 0
LDHA-224ENST00000545467 HMGXB3Q12766 1538 aa15.02□□□□□ -0.01
LDHA-224ENST00000545467 SMARCA2P51531 1590 aa14.98□□□□□ -0.01
LDHA-224ENST00000545467 LAMC3Q9Y6N6 1575 aa14.96□□□□□ -0.01
LDHA-224ENST00000545467 OSCARQ8IYS5 282 aa14.95□□□□□ -0.02
LDHA-224ENST00000545467 PDS5BQ9NTI5 1447 aa14.94□□□□□ -0.02
LDHA-224ENST00000545467 KIF21AQ7Z4S6 1674 aa14.88□□□□□ -0.03
LDHA-224ENST00000545467 BAZ1BQ9UIG0 1483 aaKnown RBP14.87□□□□□ -0.03
LDHA-224ENST00000545467 BAZ1AQ9NRL2 1556 aaPredicted RBP14.85□□□□□ -0.03
LDHA-224ENST00000545467 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
LDHA-224ENST00000545467 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
LDHA-224ENST00000545467 WDR62O43379 1518 aa14.79□□□□□ -0.04
LDHA-224ENST00000545467 FOXD1Q16676 465 aa14.76□□□□□ -0.05
LDHA-224ENST00000545467 CADPSQ9ULU8 1353 aa14.74□□□□□ -0.05
LDHA-224ENST00000545467 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
LDHA-224ENST00000545467 RIMBP3CA6NJZ7 1639 aa14.72□□□□□ -0.05
LDHA-224ENST00000545467 RIMBP3BA6NNM3 1639 aa14.72□□□□□ -0.05
LDHA-224ENST00000545467 RIMBP3Q9UFD9 1639 aa14.72□□□□□ -0.05
LDHA-224ENST00000545467 TRHP20396 242 aaPredicted RBP14.67□□□□□ -0.06
LDHA-224ENST00000545467 ARHGEF11O15085 1522 aa14.63□□□□□ -0.07
LDHA-224ENST00000545467 CYB5RLQ6IPT4 315 aa14.62□□□□□ -0.07
LDHA-224ENST00000545467 CEP164Q9UPV0 1460 aa14.61□□□□□ -0.07
LDHA-224ENST00000545467 FANCD2Q9BXW9 1451 aa14.54□□□□□ -0.08
LDHA-224ENST00000545467 MROH2BQ7Z745 1585 aa14.51□□□□□ -0.09
LDHA-224ENST00000545467 URB2Q14146 1524 aaKnown RBP14.45□□□□□ -0.1
LDHA-224ENST00000545467 ARAP1Q96P48 1450 aa14.44□□□□□ -0.1
LDHA-224ENST00000545467 CFTRP13569 1480 aa14.42□□□□□ -0.1
LDHA-224ENST00000545467 POTEDQ86YR6 584 aa14.39□□□□□ -0.11
LDHA-224ENST00000545467 ZNF608Q9ULD9 1512 aaPredicted RBP14.38□□□□□ -0.11
LDHA-224ENST00000545467 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
LDHA-224ENST00000545467 RSF1Q96T23 1441 aaPredicted RBP14.36□□□□□ -0.11
LDHA-224ENST00000545467 WIZO95785 1651 aa14.27□□□□□ -0.12
LDHA-224ENST00000545467 FBLN2P98095 1184 aa14.24□□□□□ -0.13
LDHA-224ENST00000545467 CHD1O14646 1710 aa14.24□□□□□ -0.13
LDHA-224ENST00000545467 EIF4G3O43432 1585 aaKnown RBP14.22□□□□□ -0.13
LDHA-224ENST00000545467 ILDR1Q86SU0 546 aaPredicted RBP14.22□□□□□ -0.13
LDHA-224ENST00000545467 AQRO60306 1485 aaKnown RBP eCLIP14.18□□□□□ -0.147e-13■■■■□ 22.4
LDHA-224ENST00000545467 TOPBP1Q92547 1522 aa14.18□□□□□ -0.14
LDHA-224ENST00000545467 ABCC8Q09428 1581 aa14.16□□□□□ -0.14
LDHA-224ENST00000545467 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
LDHA-224ENST00000545467 CLASP1Q7Z460 1538 aa14.1□□□□□ -0.15
LDHA-224ENST00000545467 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.15
LDHA-224ENST00000545467 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
LDHA-224ENST00000545467 MSH5O43196 834 aa14.07□□□□□ -0.16
LDHA-224ENST00000545467 CHMP7Q8WUX9 453 aaPredicted RBP14.06□□□□□ -0.16
LDHA-224ENST00000545467 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
LDHA-224ENST00000545467 SYNJ1O43426 1573 aa14.05□□□□□ -0.16
LDHA-224ENST00000545467 GAPVD1Q14C86 1478 aa14.04□□□□□ -0.16
LDHA-224ENST00000545467 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
LDHA-224ENST00000545467 SNAPC4Q5SXM2 1469 aa13.99□□□□□ -0.17
LDHA-224ENST00000545467 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
LDHA-224ENST00000545467 MAGI1Q96QZ7 1491 aaPredicted RBP13.97□□□□□ -0.17
LDHA-224ENST00000545467 RAD54L2Q9Y4B4 1467 aa13.95□□□□□ -0.18
LDHA-224ENST00000545467 KDM4FA0A1W2PPD8 638 aa13.95□□□□□ -0.18
LDHA-224ENST00000545467 SOGA1O94964 1423 aa13.95□□□□□ -0.18
LDHA-224ENST00000545467 CCDC88BA6NC98 1476 aa13.94□□□□□ -0.18
LDHA-224ENST00000545467 WDR97A6NE52 1622 aa13.93□□□□□ -0.18
LDHA-224ENST00000545467 SYNJ2O15056 1496 aa13.93□□□□□ -0.18
LDHA-224ENST00000545467 GRIN2BQ13224 1484 aa13.9□□□□□ -0.18
LDHA-224ENST00000545467 KIF13AQ9H1H9 1805 aa13.85□□□□□ -0.19
LDHA-224ENST00000545467 ERCC6L2Q5T890 1561 aa13.81□□□□□ -0.2
LDHA-224ENST00000545467 FAM69CQ0P6D2 419 aa13.8□□□□□ -0.2
LDHA-224ENST00000545467 FGD5Q6ZNL6 1462 aa13.8□□□□□ -0.2
LDHA-224ENST00000545467 ABCC10Q5T3U5 1492 aa13.76□□□□□ -0.21
LDHA-224ENST00000545467 CEP170Q5SW79 1584 aa13.75□□□□□ -0.21
LDHA-224ENST00000545467 PIAS4Q8N2W9 510 aaPredicted RBP13.73□□□□□ -0.21
LDHA-224ENST00000545467 NPM1P06748 294 aaKnown RBP eCLIP13.71□□□□□ -0.21
LDHA-224ENST00000545467 NUP160Q12769 1436 aa13.71□□□□□ -0.22
LDHA-224ENST00000545467 KDM6BO15054 1643 aa13.71□□□□□ -0.22
LDHA-224ENST00000545467 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
LDHA-224ENST00000545467 GRIN2AQ12879 1464 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms