RNA–Protein interactions for RNA: ENST00000480484.5

COMMD4-203, Transcript of COMM domain containing 4, humanhuman

TSL 1 (best)

Gene COMMD4, Length 3,225 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-203ENST00000480484 NISCHQ9Y2I1 1504 aa20.79■□□□□ 0.92
COMMD4-203ENST00000480484 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
COMMD4-203ENST00000480484 CCDC180Q9P1Z9 1646 aa19.15■□□□□ 0.66
COMMD4-203ENST00000480484 CHIC1Q5VXU3 224 aa18.82■□□□□ 0.6
COMMD4-203ENST00000480484 EHMT2Q96KQ7 1210 aa18.36■□□□□ 0.53
COMMD4-203ENST00000480484 AEBP2Q6ZN18 517 aaPredicted RBP18.21■□□□□ 0.51
COMMD4-203ENST00000480484 MYO15BQ96JP2 1530 aa18.01■□□□□ 0.47
COMMD4-203ENST00000480484 PLPPR3Q6T4P5 718 aa17.86■□□□□ 0.45
COMMD4-203ENST00000480484 DCAF1Q9Y4B6 1507 aa17.86■□□□□ 0.45
COMMD4-203ENST00000480484 RTN4Q9NQC3 1192 aaKnown RBP17.58■□□□□ 0.4
COMMD4-203ENST00000480484 NACADO15069 1562 aa17.58■□□□□ 0.4
COMMD4-203ENST00000480484 ZCCHC6Q5VYS8 1495 aaKnown RBP17.51■□□□□ 0.39
COMMD4-203ENST00000480484 SHROOM4Q9ULL8 1493 aa17.5■□□□□ 0.39
COMMD4-203ENST00000480484 RB1CC1Q8TDY2 1594 aa17.39■□□□□ 0.37
COMMD4-203ENST00000480484 UNC13AQ9UPW8 1703 aa17.38■□□□□ 0.37
COMMD4-203ENST00000480484 SUPT5HO00267 1087 aaKnown RBP17.24■□□□□ 0.35
COMMD4-203ENST00000480484 PHF23Q9BUL5 403 aaPredicted RBP17.18■□□□□ 0.34
COMMD4-203ENST00000480484 ABCC9O60706 1549 aa17.11■□□□□ 0.33
COMMD4-203ENST00000480484 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
COMMD4-203ENST00000480484 DCAF8L2P0C7V8 631 aa17.06■□□□□ 0.32
COMMD4-203ENST00000480484 KCNA4P22459 653 aa17.03■□□□□ 0.32
COMMD4-203ENST00000480484 NCBP3Q53F19 620 aaKnown RBP16.99■□□□□ 0.31
COMMD4-203ENST00000480484 BICRAQ9NZM4 1560 aa16.98■□□□□ 0.31
COMMD4-203ENST00000480484 CSRNP3Q8WYN3 585 aa16.97■□□□□ 0.31
COMMD4-203ENST00000480484 PRKCSHP14314 528 aaPredicted RBP16.9■□□□□ 0.3
COMMD4-203ENST00000480484 HRCP23327 699 aa16.89■□□□□ 0.29
COMMD4-203ENST00000480484 PPARGC1BQ86YN6 1023 aaKnown RBP16.87■□□□□ 0.29
COMMD4-203ENST00000480484 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
COMMD4-203ENST00000480484 PCGF6Q9BYE7 350 aa16.75■□□□□ 0.27
COMMD4-203ENST00000480484 LOC105371045A0A1W2PR82 267 aa16.54■□□□□ 0.24
COMMD4-203ENST00000480484 PEG3Q9GZU2 1588 aa16.53■□□□□ 0.24
COMMD4-203ENST00000480484 SCRIBQ14160 1630 aa16.44■□□□□ 0.22
COMMD4-203ENST00000480484 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
COMMD4-203ENST00000480484 SMARCA2P51531 1590 aa16.29■□□□□ 0.2
COMMD4-203ENST00000480484 EIF4G1Q04637 1599 aaKnown RBP16.28■□□□□ 0.2
COMMD4-203ENST00000480484 PELP1Q8IZL8 1130 aaKnown RBP16.24■□□□□ 0.19
COMMD4-203ENST00000480484 HMGXB3Q12766 1538 aa16.24■□□□□ 0.19
COMMD4-203ENST00000480484 SMARCA4P51532 1647 aa16.22■□□□□ 0.19
COMMD4-203ENST00000480484 BAZ1AQ9NRL2 1556 aaPredicted RBP16.15■□□□□ 0.18
COMMD4-203ENST00000480484 TULP1O00294 542 aaPredicted RBP16.14■□□□□ 0.17
COMMD4-203ENST00000480484 ARXQ96QS3 562 aa16.14■□□□□ 0.17
COMMD4-203ENST00000480484 PRDM2Q13029 1718 aa16.12■□□□□ 0.17
COMMD4-203ENST00000480484 TAOK2Q9UL54 1235 aa16.12■□□□□ 0.17
COMMD4-203ENST00000480484 CC2D2AQ9P2K1 1620 aa16.12■□□□□ 0.17
COMMD4-203ENST00000480484 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
COMMD4-203ENST00000480484 FAM9AQ8IZU1 332 aaPredicted RBP16.07■□□□□ 0.16
COMMD4-203ENST00000480484 APLP2Q06481 763 aa16.05■□□□□ 0.16
COMMD4-203ENST00000480484 SLC4A1APQ9BWU0 796 aaKnown RBP16.05■□□□□ 0.16
COMMD4-203ENST00000480484 TRIM26Q12899 539 aaPredicted RBP16.03■□□□□ 0.16
COMMD4-203ENST00000480484 SCAF1Q9H7N4 1312 aaKnown RBP16.02■□□□□ 0.15
COMMD4-203ENST00000480484 NCAPD3P42695 1498 aa16.01■□□□□ 0.15
COMMD4-203ENST00000480484 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
COMMD4-203ENST00000480484 TPRNQ4KMQ1 711 aa15.93■□□□□ 0.14
COMMD4-203ENST00000480484 MROH2BQ7Z745 1585 aa15.89■□□□□ 0.13
COMMD4-203ENST00000480484 ZEB1P37275 1124 aaPredicted RBP15.87■□□□□ 0.13
COMMD4-203ENST00000480484 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
COMMD4-203ENST00000480484 WIZO95785 1651 aa15.81■□□□□ 0.12
COMMD4-203ENST00000480484 TOP2AP11388 1531 aaKnown RBP15.81■□□□□ 0.12
COMMD4-203ENST00000480484 BCANQ96GW7 911 aa15.79■□□□□ 0.12
COMMD4-203ENST00000480484 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
COMMD4-203ENST00000480484 TTBK1Q5TCY1 1321 aaPredicted RBP15.77■□□□□ 0.11
COMMD4-203ENST00000480484 LAMC3Q9Y6N6 1575 aa15.73■□□□□ 0.11
COMMD4-203ENST00000480484 KLHL34Q8N239 644 aa15.72■□□□□ 0.11
COMMD4-203ENST00000480484 ERICH6Q7L0X2 663 aa15.72■□□□□ 0.11
COMMD4-203ENST00000480484 HOMEZQ8IX15 550 aa15.7■□□□□ 0.1
COMMD4-203ENST00000480484 RANGAP1P46060 587 aaPredicted RBP15.68■□□□□ 0.1
COMMD4-203ENST00000480484 ADRA2BP18089 450 aa15.67■□□□□ 0.1
COMMD4-203ENST00000480484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.67■□□□□ 0.1
COMMD4-203ENST00000480484 ZBTB22O15209 634 aa15.66■□□□□ 0.1
COMMD4-203ENST00000480484 PLCB2Q00722 1185 aa15.66■□□□□ 0.1
COMMD4-203ENST00000480484 SENP3Q9H4L4 574 aaPredicted RBP15.63■□□□□ 0.09
COMMD4-203ENST00000480484 ACIN1Q9UKV3 1341 aaKnown RBP15.61■□□□□ 0.09
COMMD4-203ENST00000480484 PODXL2Q9NZ53 605 aa15.61■□□□□ 0.09
COMMD4-203ENST00000480484 NEUROD1Q13562 356 aa15.6■□□□□ 0.09
COMMD4-203ENST00000480484 PABPN1Q86U42 306 aaKnown RBP eCLIP15.6■□□□□ 0.09
COMMD4-203ENST00000480484 HAP1P54257 671 aaPredicted RBP15.58■□□□□ 0.08
COMMD4-203ENST00000480484 MYT1Q01538 1121 aa15.58■□□□□ 0.08
COMMD4-203ENST00000480484 THOC2Q8NI27 1593 aaKnown RBP15.55■□□□□ 0.08
COMMD4-203ENST00000480484 GTF3C3Q9Y5Q9 886 aa15.55■□□□□ 0.08
COMMD4-203ENST00000480484 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
COMMD4-203ENST00000480484 WDR97A6NE52 1622 aa15.54■□□□□ 0.08
COMMD4-203ENST00000480484 CCDC88BA6NC98 1476 aa15.47■□□□□ 0.07
COMMD4-203ENST00000480484 CENPBP07199 599 aaPredicted RBP15.46■□□□□ 0.07
COMMD4-203ENST00000480484 ABCC8Q09428 1581 aa15.45■□□□□ 0.06
COMMD4-203ENST00000480484 KIF21AQ7Z4S6 1674 aa15.44■□□□□ 0.06
COMMD4-203ENST00000480484 CCER1Q8TC90 406 aaPredicted RBP15.43■□□□□ 0.06
COMMD4-203ENST00000480484 DNAJC5BQ9UF47 199 aa15.42■□□□□ 0.06
COMMD4-203ENST00000480484 CFTRP13569 1480 aa15.42■□□□□ 0.06
COMMD4-203ENST00000480484 WDR62O43379 1518 aa15.4■□□□□ 0.06
COMMD4-203ENST00000480484 DIEXFQ68CQ4 756 aaKnown RBP15.39■□□□□ 0.06
COMMD4-203ENST00000480484 CUX2O14529 1486 aa15.35■□□□□ 0.05
COMMD4-203ENST00000480484 YTHDC1Q96MU7 727 aaKnown RBP15.32■□□□□ 0.04
COMMD4-203ENST00000480484 BIVM-ERCC5R4GMW8 1640 aa15.31■□□□□ 0.04
COMMD4-203ENST00000480484 SOGA1O94964 1423 aa15.26■□□□□ 0.03
COMMD4-203ENST00000480484 RUSC2Q8N2Y8 1516 aa15.22■□□□□ 0.03
COMMD4-203ENST00000480484 EIF5BO60841 1220 aaKnown RBP15.21■□□□□ 0.03
COMMD4-203ENST00000480484 FKBP8Q14318 412 aa15.2■□□□□ 0.02
COMMD4-203ENST00000480484 CADPSQ9ULU8 1353 aa15.18■□□□□ 0.02
COMMD4-203ENST00000480484 DNMBPQ6XZF7 1577 aa15.17■□□□□ 0.02
COMMD4-203ENST00000480484 TMEM132AQ24JP5 1023 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms