RNA–Protein interactions for RNA: ENST00000338995.10

COMMD4-202, Transcript of COMM domain containing 4, humanhuman

TSL 2 BASIC

Gene COMMD4, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-202ENST00000338995 NISCHQ9Y2I1 1504 aa35.37■■■■□ 3.25
COMMD4-202ENST00000338995 ABCC9O60706 1549 aa31.9■■■□□ 2.7
COMMD4-202ENST00000338995 CCDC180Q9P1Z9 1646 aa31.71■■■□□ 2.67
COMMD4-202ENST00000338995 RB1CC1Q8TDY2 1594 aa30.33■■■□□ 2.45
COMMD4-202ENST00000338995 DCAF8L2P0C7V8 631 aa30.16■■■□□ 2.42
COMMD4-202ENST00000338995 NACADO15069 1562 aa30.11■■■□□ 2.41
COMMD4-202ENST00000338995 DNAJC5BQ9UF47 199 aa30.04■■■□□ 2.4
COMMD4-202ENST00000338995 PABPN1Q86U42 306 aaKnown RBP eCLIP29.78■■■□□ 2.36
COMMD4-202ENST00000338995 MYO15BQ96JP2 1530 aa29.66■■■□□ 2.34
COMMD4-202ENST00000338995 UNC13AQ9UPW8 1703 aa29.45■■■□□ 2.3
COMMD4-202ENST00000338995 BICRAQ9NZM4 1560 aa29.32■■■□□ 2.28
COMMD4-202ENST00000338995 ZCCHC6Q5VYS8 1495 aaKnown RBP29.23■■■□□ 2.27
COMMD4-202ENST00000338995 DCAF1Q9Y4B6 1507 aa29.22■■■□□ 2.27
COMMD4-202ENST00000338995 SHROOM4Q9ULL8 1493 aa29.05■■■□□ 2.24
COMMD4-202ENST00000338995 SCRIBQ14160 1630 aa28.9■■■□□ 2.22
COMMD4-202ENST00000338995 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
COMMD4-202ENST00000338995 CC2D2AQ9P2K1 1620 aa28.76■■■□□ 2.2
COMMD4-202ENST00000338995 EIF4G1Q04637 1599 aaKnown RBP28.68■■■□□ 2.18
COMMD4-202ENST00000338995 NCAPD3P42695 1498 aa27.83■■■□□ 2.04
COMMD4-202ENST00000338995 DNAJC5Q9H3Z4 198 aa27.78■■■□□ 2.04
COMMD4-202ENST00000338995 ATAD2BQ9ULI0 1458 aa27.69■■■□□ 2.02
COMMD4-202ENST00000338995 ERCC6Q03468 1493 aa27.64■■■□□ 2.01
COMMD4-202ENST00000338995 SMARCA2P51531 1590 aa27.63■■■□□ 2.01
COMMD4-202ENST00000338995 CUX2O14529 1486 aa27.57■■■□□ 2
COMMD4-202ENST00000338995 SMARCA4P51532 1647 aa27.56■■■□□ 2
COMMD4-202ENST00000338995 HMGXB3Q12766 1538 aa27.52■■■□□ 2
COMMD4-202ENST00000338995 BAZ1AQ9NRL2 1556 aaPredicted RBP27.49■■□□□ 1.99
COMMD4-202ENST00000338995 BAZ1BQ9UIG0 1483 aaKnown RBP27.44■■□□□ 1.98
COMMD4-202ENST00000338995 NESP48681 1621 aa27.32■■□□□ 1.96
COMMD4-202ENST00000338995 PEG3Q9GZU2 1588 aa27.3■■□□□ 1.96
COMMD4-202ENST00000338995 MROH2BQ7Z745 1585 aa27.22■■□□□ 1.95
COMMD4-202ENST00000338995 LAMC3Q9Y6N6 1575 aa27.17■■□□□ 1.94
COMMD4-202ENST00000338995 PDS5BQ9NTI5 1447 aa27.14■■□□□ 1.93
COMMD4-202ENST00000338995 CADPSQ9ULU8 1353 aa27.02■■□□□ 1.92
COMMD4-202ENST00000338995 THOC2Q8NI27 1593 aaKnown RBP26.99■■□□□ 1.91
COMMD4-202ENST00000338995 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
COMMD4-202ENST00000338995 WIZO95785 1651 aa26.85■■□□□ 1.89
COMMD4-202ENST00000338995 MRC2Q9UBG0 1479 aa26.81■■□□□ 1.88
COMMD4-202ENST00000338995 CEP164Q9UPV0 1460 aa26.69■■□□□ 1.86
COMMD4-202ENST00000338995 WDR62O43379 1518 aa26.68■■□□□ 1.86
COMMD4-202ENST00000338995 RSF1Q96T23 1441 aaPredicted RBP26.67■■□□□ 1.86
COMMD4-202ENST00000338995 FANCD2Q9BXW9 1451 aa26.65■■□□□ 1.86
COMMD4-202ENST00000338995 CFTRP13569 1480 aa26.62■■□□□ 1.85
COMMD4-202ENST00000338995 TOP2AP11388 1531 aaKnown RBP26.55■■□□□ 1.84
COMMD4-202ENST00000338995 TRIM41Q8WV44 630 aa26.54■■□□□ 1.84
COMMD4-202ENST00000338995 OSCARQ8IYS5 282 aa26.47■■□□□ 1.83
COMMD4-202ENST00000338995 URB2Q14146 1524 aaKnown RBP26.37■■□□□ 1.81
COMMD4-202ENST00000338995 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
COMMD4-202ENST00000338995 PRDM2Q13029 1718 aa26.19■■□□□ 1.78
COMMD4-202ENST00000338995 IFT140Q96RY7 1462 aa26.19■■□□□ 1.78
COMMD4-202ENST00000338995 ABCC8Q09428 1581 aa26.17■■□□□ 1.78
COMMD4-202ENST00000338995 TOPBP1Q92547 1522 aa26.1■■□□□ 1.77
COMMD4-202ENST00000338995 ZNF608Q9ULD9 1512 aaPredicted RBP26.07■■□□□ 1.76
COMMD4-202ENST00000338995 DNMBPQ6XZF7 1577 aa25.98■■□□□ 1.75
COMMD4-202ENST00000338995 FBLN2P98095 1184 aa25.9■■□□□ 1.74
COMMD4-202ENST00000338995 AQRO60306 1485 aaKnown RBP eCLIP25.89■■□□□ 1.73
COMMD4-202ENST00000338995 RIMBP3CA6NJZ7 1639 aa25.88■■□□□ 1.73
COMMD4-202ENST00000338995 RIMBP3BA6NNM3 1639 aa25.88■■□□□ 1.73
COMMD4-202ENST00000338995 RIMBP3Q9UFD9 1639 aa25.88■■□□□ 1.73
COMMD4-202ENST00000338995 EIF4G3O43432 1585 aaKnown RBP25.86■■□□□ 1.73
COMMD4-202ENST00000338995 CYB5RLQ6IPT4 315 aa25.83■■□□□ 1.73
COMMD4-202ENST00000338995 SOGA1O94964 1423 aa25.82■■□□□ 1.72
COMMD4-202ENST00000338995 POLA1P09884 1462 aaPredicted RBP25.82■■□□□ 1.72
COMMD4-202ENST00000338995 ARHGEF11O15085 1522 aa25.82■■□□□ 1.72
COMMD4-202ENST00000338995 TARBP1Q13395 1621 aaKnown RBP25.81■■□□□ 1.72
COMMD4-202ENST00000338995 TDRD9Q8NDG6 1382 aaKnown RBP25.75■■□□□ 1.71
COMMD4-202ENST00000338995 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
COMMD4-202ENST00000338995 CHMP7Q8WUX9 453 aaPredicted RBP25.71■■□□□ 1.71
COMMD4-202ENST00000338995 CHD1O14646 1710 aa25.67■■□□□ 1.7
COMMD4-202ENST00000338995 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
COMMD4-202ENST00000338995 TRHP20396 242 aaPredicted RBP25.63■■□□□ 1.69
COMMD4-202ENST00000338995 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
COMMD4-202ENST00000338995 SUPT5HO00267 1087 aaKnown RBP25.58■■□□□ 1.69
COMMD4-202ENST00000338995 SNAPC4Q5SXM2 1469 aa25.58■■□□□ 1.69
COMMD4-202ENST00000338995 GRIN2BQ13224 1484 aa25.57■■□□□ 1.68
COMMD4-202ENST00000338995 CUX1P39880 1505 aa25.57■■□□□ 1.68
COMMD4-202ENST00000338995 MAGI1Q96QZ7 1491 aaPredicted RBP25.56■■□□□ 1.68
COMMD4-202ENST00000338995 ARAP1Q96P48 1450 aa25.54■■□□□ 1.68
COMMD4-202ENST00000338995 SYNJ1O43426 1573 aa25.49■■□□□ 1.67
COMMD4-202ENST00000338995 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
COMMD4-202ENST00000338995 GAPVD1Q14C86 1478 aa25.46■■□□□ 1.67
COMMD4-202ENST00000338995 CLASP1Q7Z460 1538 aa25.41■■□□□ 1.66
COMMD4-202ENST00000338995 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
COMMD4-202ENST00000338995 WRNQ14191 1432 aaPredicted RBP eCLIP25.35■■□□□ 1.65
COMMD4-202ENST00000338995 PBRM1Q86U86 1689 aa25.29■■□□□ 1.64
COMMD4-202ENST00000338995 ABCA5Q8WWZ7 1642 aa25.24■■□□□ 1.63
COMMD4-202ENST00000338995 GRIN2AQ12879 1464 aa25.19■■□□□ 1.62
COMMD4-202ENST00000338995 FHAD1B1AJZ9 1412 aa25.15■■□□□ 1.62
COMMD4-202ENST00000338995 TOP2BQ02880 1626 aa25.15■■□□□ 1.62
COMMD4-202ENST00000338995 BIVM-ERCC5R4GMW8 1640 aa25.1■■□□□ 1.61
COMMD4-202ENST00000338995 NUP160Q12769 1436 aa25.1■■□□□ 1.61
COMMD4-202ENST00000338995 ADAMTS12P58397 1594 aa25.07■■□□□ 1.6
COMMD4-202ENST00000338995 ERICH3Q5RHP9 1530 aa25.06■■□□□ 1.6
COMMD4-202ENST00000338995 JPH4Q96JJ6 628 aa25.02■■□□□ 1.6
COMMD4-202ENST00000338995 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
COMMD4-202ENST00000338995 AEBP2Q6ZN18 517 aaPredicted RBP25.01■■□□□ 1.59
COMMD4-202ENST00000338995 ERCC6L2Q5T890 1561 aa24.97■■□□□ 1.59
COMMD4-202ENST00000338995 PRG4Q92954 1404 aaPredicted RBP24.94■■□□□ 1.58
COMMD4-202ENST00000338995 NPM1P06748 294 aaKnown RBP eCLIP24.92■■□□□ 1.58
COMMD4-202ENST00000338995 SHROOM2Q13796 1616 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms