RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 NISCHQ9Y2I1 1504 aa31.23■■■□□ 2.59
UPF1-208ENST00000600012 CCDC180Q9P1Z9 1646 aa28.12■■■□□ 2.09
UPF1-208ENST00000600012 ABCC9O60706 1549 aa28.09■■■□□ 2.09
UPF1-208ENST00000600012 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
UPF1-208ENST00000600012 NACADO15069 1562 aa26.57■■□□□ 1.84
UPF1-208ENST00000600012 DNAJC5BQ9UF47 199 aa26.36■■□□□ 1.81
UPF1-208ENST00000600012 DCAF8L2P0C7V8 631 aa26.31■■□□□ 1.8
UPF1-208ENST00000600012 MYO15BQ96JP2 1530 aa26.19■■□□□ 1.78
UPF1-208ENST00000600012 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
UPF1-208ENST00000600012 PABPN1Q86U42 306 aaKnown RBP eCLIP26.1■■□□□ 1.77
UPF1-208ENST00000600012 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
UPF1-208ENST00000600012 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
UPF1-208ENST00000600012 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.72
UPF1-208ENST00000600012 SHROOM4Q9ULL8 1493 aa25.67■■□□□ 1.7
UPF1-208ENST00000600012 SCRIBQ14160 1630 aa25.55■■□□□ 1.68
UPF1-208ENST00000600012 CC2D2AQ9P2K1 1620 aa25.41■■□□□ 1.66
UPF1-208ENST00000600012 EIF4G1Q04637 1599 aaKnown RBP25.34■■□□□ 1.65
UPF1-208ENST00000600012 CECR2Q9BXF3 1484 aa25.34■■□□□ 1.65
UPF1-208ENST00000600012 NCAPD3P42695 1498 aa24.5■■□□□ 1.51
UPF1-208ENST00000600012 ATAD2BQ9ULI0 1458 aa24.41■■□□□ 1.5
UPF1-208ENST00000600012 SMARCA4P51532 1647 aa24.39■■□□□ 1.5
UPF1-208ENST00000600012 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
UPF1-208ENST00000600012 HMGXB3Q12766 1538 aa24.35■■□□□ 1.49
UPF1-208ENST00000600012 DNAJC5Q9H3Z4 198 aa24.3■■□□□ 1.48
UPF1-208ENST00000600012 CUX2O14529 1486 aa24.29■■□□□ 1.48
UPF1-208ENST00000600012 ERCC6Q03468 1493 aa24.28■■□□□ 1.48
UPF1-208ENST00000600012 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
UPF1-208ENST00000600012 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
UPF1-208ENST00000600012 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
UPF1-208ENST00000600012 NESP48681 1621 aa24.11■■□□□ 1.45
UPF1-208ENST00000600012 MROH2BQ7Z745 1585 aa24.04■■□□□ 1.44
UPF1-208ENST00000600012 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
UPF1-208ENST00000600012 THOC2Q8NI27 1593 aaKnown RBP23.93■■□□□ 1.42
UPF1-208ENST00000600012 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
UPF1-208ENST00000600012 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.4
UPF1-208ENST00000600012 WIZO95785 1651 aa23.76■■□□□ 1.39
UPF1-208ENST00000600012 CADPSQ9ULU8 1353 aa23.74■■□□□ 1.39
UPF1-208ENST00000600012 MRC2Q9UBG0 1479 aa23.63■■□□□ 1.37
UPF1-208ENST00000600012 WDR62O43379 1518 aa23.59■■□□□ 1.37
UPF1-208ENST00000600012 CEP164Q9UPV0 1460 aa23.53■■□□□ 1.36
UPF1-208ENST00000600012 RSF1Q96T23 1441 aaPredicted RBP23.51■■□□□ 1.35
UPF1-208ENST00000600012 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
UPF1-208ENST00000600012 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
UPF1-208ENST00000600012 CFTRP13569 1480 aa23.47■■□□□ 1.35
UPF1-208ENST00000600012 PRDM2Q13029 1718 aa23.31■■□□□ 1.32
UPF1-208ENST00000600012 URB2Q14146 1524 aaKnown RBP23.28■■□□□ 1.32
UPF1-208ENST00000600012 TRIM41Q8WV44 630 aa23.18■■□□□ 1.3
UPF1-208ENST00000600012 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
UPF1-208ENST00000600012 OSCARQ8IYS5 282 aa23.12■■□□□ 1.29
UPF1-208ENST00000600012 IFT140Q96RY7 1462 aa23.05■■□□□ 1.28
UPF1-208ENST00000600012 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
UPF1-208ENST00000600012 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
UPF1-208ENST00000600012 ZNF608Q9ULD9 1512 aaPredicted RBP22.99■■□□□ 1.27
UPF1-208ENST00000600012 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
UPF1-208ENST00000600012 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
UPF1-208ENST00000600012 RIMBP3CA6NJZ7 1639 aa22.86■■□□□ 1.25
UPF1-208ENST00000600012 RIMBP3BA6NNM3 1639 aa22.86■■□□□ 1.25
UPF1-208ENST00000600012 RIMBP3Q9UFD9 1639 aa22.86■■□□□ 1.25
UPF1-208ENST00000600012 TARBP1Q13395 1621 aaKnown RBP22.84■■□□□ 1.25
UPF1-208ENST00000600012 POLA1P09884 1462 aaPredicted RBP22.79■■□□□ 1.24
UPF1-208ENST00000600012 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
UPF1-208ENST00000600012 AQRO60306 1485 aaKnown RBP eCLIP22.77■■□□□ 1.249e-9■■■■■ 44.1
UPF1-208ENST00000600012 CHD1O14646 1710 aa22.77■■□□□ 1.23
UPF1-208ENST00000600012 RAD54L2Q9Y4B4 1467 aa22.68■■□□□ 1.22
UPF1-208ENST00000600012 SOGA1O94964 1423 aa22.66■■□□□ 1.22
UPF1-208ENST00000600012 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
UPF1-208ENST00000600012 FGD5Q6ZNL6 1462 aa22.64■■□□□ 1.21
UPF1-208ENST00000600012 FBLN2P98095 1184 aa22.62■■□□□ 1.21
UPF1-208ENST00000600012 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
UPF1-208ENST00000600012 CUX1P39880 1505 aa22.6■■□□□ 1.21
UPF1-208ENST00000600012 SNAPC4Q5SXM2 1469 aa22.56■■□□□ 1.2
UPF1-208ENST00000600012 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
UPF1-208ENST00000600012 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
UPF1-208ENST00000600012 MAGI1Q96QZ7 1491 aaPredicted RBP22.53■■□□□ 1.2
UPF1-208ENST00000600012 GRIN2BQ13224 1484 aa22.51■■□□□ 1.19
UPF1-208ENST00000600012 CLASP1Q7Z460 1538 aa22.48■■□□□ 1.19
UPF1-208ENST00000600012 SYNJ1O43426 1573 aa22.48■■□□□ 1.19
UPF1-208ENST00000600012 SUPT5HO00267 1087 aaKnown RBP22.46■■□□□ 1.19
UPF1-208ENST00000600012 CHMP7Q8WUX9 453 aaPredicted RBP22.46■■□□□ 1.19
UPF1-208ENST00000600012 PBRM1Q86U86 1689 aa22.45■■□□□ 1.18
UPF1-208ENST00000600012 SYNJ2O15056 1496 aa22.44■■□□□ 1.18
UPF1-208ENST00000600012 GAPVD1Q14C86 1478 aa22.41■■□□□ 1.18
UPF1-208ENST00000600012 ABCA10Q8WWZ4 1543 aa22.39■■□□□ 1.17
UPF1-208ENST00000600012 ABCA5Q8WWZ7 1642 aa22.38■■□□□ 1.17
UPF1-208ENST00000600012 TRHP20396 242 aaPredicted RBP22.34■■□□□ 1.17
UPF1-208ENST00000600012 WRNQ14191 1432 aaPredicted RBP eCLIP22.27■■□□□ 1.16
UPF1-208ENST00000600012 BIVM-ERCC5R4GMW8 1640 aa22.26■■□□□ 1.15
UPF1-208ENST00000600012 TOP2BQ02880 1626 aa22.25■■□□□ 1.15
UPF1-208ENST00000600012 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
UPF1-208ENST00000600012 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
UPF1-208ENST00000600012 NUP160Q12769 1436 aa22.14■■□□□ 1.14
UPF1-208ENST00000600012 CEP170Q5SW79 1584 aa22.14■■□□□ 1.13
UPF1-208ENST00000600012 FHAD1B1AJZ9 1412 aa22.13■■□□□ 1.13
UPF1-208ENST00000600012 ERICH3Q5RHP9 1530 aa22.12■■□□□ 1.13
UPF1-208ENST00000600012 ERCC6L2Q5T890 1561 aa22.09■■□□□ 1.13
UPF1-208ENST00000600012 SHROOM2Q13796 1616 aa22.08■■□□□ 1.13
UPF1-208ENST00000600012 PRG4Q92954 1404 aaPredicted RBP21.91■■□□□ 1.1
UPF1-208ENST00000600012 RUSC2Q8N2Y8 1516 aa21.9■■□□□ 1.1
UPF1-208ENST00000600012 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
UPF1-208ENST00000600012 KIF13AQ9H1H9 1805 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms