RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 NISCHQ9Y2I1 1504 aa31.32■■■□□ 2.6
COMMD4-215ENST00000566843 CCDC180Q9P1Z9 1646 aa27.27■■□□□ 1.96
COMMD4-215ENST00000566843 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
COMMD4-215ENST00000566843 SUPT5HO00267 1087 aaKnown RBP26.46■■□□□ 1.83
COMMD4-215ENST00000566843 ZCCHC6Q5VYS8 1495 aaKnown RBP26.42■■□□□ 1.82
COMMD4-215ENST00000566843 HRCP23327 699 aa26.31■■□□□ 1.8
COMMD4-215ENST00000566843 MYO15BQ96JP2 1530 aa26.19■■□□□ 1.78
COMMD4-215ENST00000566843 ABCC9O60706 1549 aa26.16■■□□□ 1.78
COMMD4-215ENST00000566843 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.78
COMMD4-215ENST00000566843 CHIC1Q5VXU3 224 aa26.13■■□□□ 1.77
COMMD4-215ENST00000566843 DCAF1Q9Y4B6 1507 aa25.79■■□□□ 1.72
COMMD4-215ENST00000566843 PCGF6Q9BYE7 350 aa25.79■■□□□ 1.72
COMMD4-215ENST00000566843 PPARGC1BQ86YN6 1023 aaKnown RBP25.56■■□□□ 1.68
COMMD4-215ENST00000566843 NACADO15069 1562 aa25.48■■□□□ 1.67
COMMD4-215ENST00000566843 RB1CC1Q8TDY2 1594 aa25.33■■□□□ 1.65
COMMD4-215ENST00000566843 LOC105371045A0A1W2PR82 267 aa25.3■■□□□ 1.64
COMMD4-215ENST00000566843 TRIM26Q12899 539 aaPredicted RBP25.28■■□□□ 1.64
COMMD4-215ENST00000566843 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
COMMD4-215ENST00000566843 ZEB1P37275 1124 aaPredicted RBP25.02■■□□□ 1.6
COMMD4-215ENST00000566843 PELP1Q8IZL8 1130 aaKnown RBP24.85■■□□□ 1.57
COMMD4-215ENST00000566843 UNC13AQ9UPW8 1703 aa24.82■■□□□ 1.56
COMMD4-215ENST00000566843 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
COMMD4-215ENST00000566843 PABPN1Q86U42 306 aaKnown RBP eCLIP24.71■■□□□ 1.55
COMMD4-215ENST00000566843 TRIM41Q8WV44 630 aa24.65■■□□□ 1.54
COMMD4-215ENST00000566843 BICRAQ9NZM4 1560 aa24.61■■□□□ 1.53
COMMD4-215ENST00000566843 SCAF1Q9H7N4 1312 aaKnown RBP24.56■■□□□ 1.52
COMMD4-215ENST00000566843 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.5
COMMD4-215ENST00000566843 FAM9AQ8IZU1 332 aaPredicted RBP24.4■■□□□ 1.5
COMMD4-215ENST00000566843 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
COMMD4-215ENST00000566843 BAZ1AQ9NRL2 1556 aaPredicted RBP24.17■■□□□ 1.46
COMMD4-215ENST00000566843 ACIN1Q9UKV3 1341 aaKnown RBP24.17■■□□□ 1.46
COMMD4-215ENST00000566843 SMARCA4P51532 1647 aa24.1■■□□□ 1.45
COMMD4-215ENST00000566843 EHMT2Q96KQ7 1210 aa24.09■■□□□ 1.45
COMMD4-215ENST00000566843 EIF4G1Q04637 1599 aaKnown RBP24.09■■□□□ 1.45
COMMD4-215ENST00000566843 WIZO95785 1651 aa24.06■■□□□ 1.44
COMMD4-215ENST00000566843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.05■■□□□ 1.44
COMMD4-215ENST00000566843 NEUROD1Q13562 356 aa24.04■■□□□ 1.44
COMMD4-215ENST00000566843 CCER1Q8TC90 406 aaPredicted RBP24.04■■□□□ 1.44
COMMD4-215ENST00000566843 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
COMMD4-215ENST00000566843 DIEXFQ68CQ4 756 aaKnown RBP23.93■■□□□ 1.42
COMMD4-215ENST00000566843 CENPBP07199 599 aaPredicted RBP23.91■■□□□ 1.42
COMMD4-215ENST00000566843 MYT1Q01538 1121 aa23.87■■□□□ 1.41
COMMD4-215ENST00000566843 GTF3C3Q9Y5Q9 886 aa23.84■■□□□ 1.41
COMMD4-215ENST00000566843 ATAD2BQ9ULI0 1458 aa23.78■■□□□ 1.4
COMMD4-215ENST00000566843 CEP162Q5TB80 1403 aa23.76■■□□□ 1.39
COMMD4-215ENST00000566843 PEG3Q9GZU2 1588 aa23.76■■□□□ 1.39
COMMD4-215ENST00000566843 TNIKQ9UKE5 1360 aa23.73■■□□□ 1.39
COMMD4-215ENST00000566843 TOP2AP11388 1531 aaKnown RBP23.73■■□□□ 1.39
COMMD4-215ENST00000566843 CCDC88BA6NC98 1476 aa23.71■■□□□ 1.39
COMMD4-215ENST00000566843 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
COMMD4-215ENST00000566843 ABCC8Q09428 1581 aa23.68■■□□□ 1.38
COMMD4-215ENST00000566843 EEA1Q15075 1411 aa23.65■■□□□ 1.38
COMMD4-215ENST00000566843 ZNF316A6NFI3 1004 aaPredicted RBP23.64■■□□□ 1.38
COMMD4-215ENST00000566843 BAZ1BQ9UIG0 1483 aaKnown RBP23.64■■□□□ 1.38
COMMD4-215ENST00000566843 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
COMMD4-215ENST00000566843 SOGA1O94964 1423 aa23.58■■□□□ 1.37
COMMD4-215ENST00000566843 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
COMMD4-215ENST00000566843 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
COMMD4-215ENST00000566843 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
COMMD4-215ENST00000566843 HMGXB3Q12766 1538 aa23.48■■□□□ 1.35
COMMD4-215ENST00000566843 GOLGA3Q08378 1498 aa23.47■■□□□ 1.35
COMMD4-215ENST00000566843 RUSC2Q8N2Y8 1516 aa23.44■■□□□ 1.34
COMMD4-215ENST00000566843 UBTFP17480 764 aaKnown RBP23.38■■□□□ 1.33
COMMD4-215ENST00000566843 MIER1Q8N108 512 aa23.34■■□□□ 1.33
COMMD4-215ENST00000566843 KIF21BO75037 1637 aa23.31■■□□□ 1.32
COMMD4-215ENST00000566843 DNAJC5BQ9UF47 199 aa23.29■■□□□ 1.32
COMMD4-215ENST00000566843 CEP164Q9UPV0 1460 aa23.28■■□□□ 1.32
COMMD4-215ENST00000566843 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
COMMD4-215ENST00000566843 VPS8Q8N3P4 1428 aa23.2■■□□□ 1.3
COMMD4-215ENST00000566843 CLIP1P30622 1438 aa23.19■■□□□ 1.3
COMMD4-215ENST00000566843 HNRNPUL2Q1KMD3 747 aaKnown RBP23.19■■□□□ 1.3
COMMD4-215ENST00000566843 SYNJ1O43426 1573 aa23.13■■□□□ 1.29
COMMD4-215ENST00000566843 CLSPNQ9HAW4 1339 aa23.09■■□□□ 1.29
COMMD4-215ENST00000566843 CFTRP13569 1480 aa23.02■■□□□ 1.28
COMMD4-215ENST00000566843 CADPSQ9ULU8 1353 aa23■■□□□ 1.27
COMMD4-215ENST00000566843 RAPGEF2Q9Y4G8 1499 aa22.99■■□□□ 1.27
COMMD4-215ENST00000566843 APLP2Q06481 763 aa22.99■■□□□ 1.27
COMMD4-215ENST00000566843 DHX57Q6P158 1386 aaKnown RBP22.95■■□□□ 1.27
COMMD4-215ENST00000566843 NESP48681 1621 aa22.92■■□□□ 1.26
COMMD4-215ENST00000566843 SUPT16HQ9Y5B9 1047 aaKnown RBP22.87■■□□□ 1.25
COMMD4-215ENST00000566843 ERICH3Q5RHP9 1530 aa22.84■■□□□ 1.25
COMMD4-215ENST00000566843 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
COMMD4-215ENST00000566843 CUX2O14529 1486 aa22.8■■□□□ 1.24
COMMD4-215ENST00000566843 ARAP1Q96P48 1450 aa22.8■■□□□ 1.24
COMMD4-215ENST00000566843 RRBP1Q9P2E9 1410 aaKnown RBP22.79■■□□□ 1.24
COMMD4-215ENST00000566843 BIVM-ERCC5R4GMW8 1640 aa22.77■■□□□ 1.24
COMMD4-215ENST00000566843 PRDM2Q13029 1718 aa22.77■■□□□ 1.24
COMMD4-215ENST00000566843 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
COMMD4-215ENST00000566843 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
COMMD4-215ENST00000566843 FANCD2Q9BXW9 1451 aa22.75■■□□□ 1.23
COMMD4-215ENST00000566843 KANK4Q5T7N3 995 aaPredicted RBP22.68■■□□□ 1.22
COMMD4-215ENST00000566843 TSHZ2Q9NRE2 1034 aa22.67■■□□□ 1.22
COMMD4-215ENST00000566843 CUX1P39880 1505 aa22.66■■□□□ 1.22
COMMD4-215ENST00000566843 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
COMMD4-215ENST00000566843 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
COMMD4-215ENST00000566843 CCNB3Q8WWL7 1395 aa22.59■■□□□ 1.21
COMMD4-215ENST00000566843 KIF21AQ7Z4S6 1674 aa22.55■■□□□ 1.2
COMMD4-215ENST00000566843 ANP32EQ9BTT0 268 aa22.54■■□□□ 1.2
COMMD4-215ENST00000566843 MAPKBP1O60336 1514 aa22.51■■□□□ 1.19
COMMD4-215ENST00000566843 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms