RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NISCHQ9Y2I1 1504 aa33.89■■■■□ 3.02
UPF1-211ENST00000600868 CCDC180Q9P1Z9 1646 aa29.89■■■□□ 2.38
UPF1-211ENST00000600868 ABCC9O60706 1549 aa28.7■■■□□ 2.19
UPF1-211ENST00000600868 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
UPF1-211ENST00000600868 DCAF1Q9Y4B6 1507 aa28.09■■■□□ 2.09
UPF1-211ENST00000600868 DCAF8L2P0C7V8 631 aa28.06■■■□□ 2.08
UPF1-211ENST00000600868 MYO15BQ96JP2 1530 aa28.02■■■□□ 2.08
UPF1-211ENST00000600868 NACADO15069 1562 aa27.99■■■□□ 2.07
UPF1-211ENST00000600868 RB1CC1Q8TDY2 1594 aa27.87■■■□□ 2.05
UPF1-211ENST00000600868 SCRIBQ14160 1630 aa27.28■■□□□ 1.96
UPF1-211ENST00000600868 UNC13AQ9UPW8 1703 aa27.22■■□□□ 1.95
UPF1-211ENST00000600868 SHROOM4Q9ULL8 1493 aa27.06■■□□□ 1.92
UPF1-211ENST00000600868 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.91
UPF1-211ENST00000600868 PABPN1Q86U42 306 aaKnown RBP eCLIP26.92■■□□□ 1.9
UPF1-211ENST00000600868 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
UPF1-211ENST00000600868 EIF4G1Q04637 1599 aaKnown RBP26.24■■□□□ 1.79
UPF1-211ENST00000600868 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
UPF1-211ENST00000600868 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
UPF1-211ENST00000600868 MROH2BQ7Z745 1585 aa26.12■■□□□ 1.77
UPF1-211ENST00000600868 RSF1Q96T23 1441 aaPredicted RBP26.03■■□□□ 1.76
UPF1-211ENST00000600868 CC2D2AQ9P2K1 1620 aa26■■□□□ 1.75
UPF1-211ENST00000600868 PEG3Q9GZU2 1588 aa25.93■■□□□ 1.74
UPF1-211ENST00000600868 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
UPF1-211ENST00000600868 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
UPF1-211ENST00000600868 DNAJC5BQ9UF47 199 aa25.87■■□□□ 1.73
UPF1-211ENST00000600868 WIZO95785 1651 aa25.85■■□□□ 1.73
UPF1-211ENST00000600868 NCAPD3P42695 1498 aa25.83■■□□□ 1.73
UPF1-211ENST00000600868 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
UPF1-211ENST00000600868 SUPT5HO00267 1087 aaKnown RBP25.73■■□□□ 1.71
UPF1-211ENST00000600868 BAZ1BQ9UIG0 1483 aaKnown RBP25.71■■□□□ 1.71
UPF1-211ENST00000600868 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
UPF1-211ENST00000600868 CCDC88BA6NC98 1476 aa25.33■■□□□ 1.65
UPF1-211ENST00000600868 CADPSQ9ULU8 1353 aa25.09■■□□□ 1.61
UPF1-211ENST00000600868 CFTRP13569 1480 aa25.06■■□□□ 1.6
UPF1-211ENST00000600868 LAMC3Q9Y6N6 1575 aa25.05■■□□□ 1.6
UPF1-211ENST00000600868 NESP48681 1621 aa25■■□□□ 1.59
UPF1-211ENST00000600868 PRDM2Q13029 1718 aa24.89■■□□□ 1.58
UPF1-211ENST00000600868 PDS5BQ9NTI5 1447 aa24.86■■□□□ 1.57
UPF1-211ENST00000600868 FANCD2Q9BXW9 1451 aa24.79■■□□□ 1.56
UPF1-211ENST00000600868 KIF21AQ7Z4S6 1674 aa24.72■■□□□ 1.55
UPF1-211ENST00000600868 CEP164Q9UPV0 1460 aa24.7■■□□□ 1.55
UPF1-211ENST00000600868 ERCC6Q03468 1493 aa24.7■■□□□ 1.54
UPF1-211ENST00000600868 MRC2Q9UBG0 1479 aa24.57■■□□□ 1.52
UPF1-211ENST00000600868 ABCC8Q09428 1581 aa24.54■■□□□ 1.52
UPF1-211ENST00000600868 WRNQ14191 1432 aaPredicted RBP eCLIP24.52■■□□□ 1.52
UPF1-211ENST00000600868 THOC2Q8NI27 1593 aaKnown RBP24.51■■□□□ 1.51
UPF1-211ENST00000600868 URB2Q14146 1524 aaKnown RBP24.51■■□□□ 1.51
UPF1-211ENST00000600868 DNMBPQ6XZF7 1577 aa24.47■■□□□ 1.51
UPF1-211ENST00000600868 WDR62O43379 1518 aa24.47■■□□□ 1.51
UPF1-211ENST00000600868 CUX1P39880 1505 aa24.47■■□□□ 1.51
UPF1-211ENST00000600868 TOPBP1Q92547 1522 aa24.45■■□□□ 1.51
UPF1-211ENST00000600868 SYNJ1O43426 1573 aa24.42■■□□□ 1.5
UPF1-211ENST00000600868 TOP2BQ02880 1626 aa24.41■■□□□ 1.5
UPF1-211ENST00000600868 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
UPF1-211ENST00000600868 CHIC1Q5VXU3 224 aa24.37■■□□□ 1.49
UPF1-211ENST00000600868 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
UPF1-211ENST00000600868 FGD5Q6ZNL6 1462 aa24.3■■□□□ 1.48
UPF1-211ENST00000600868 POLA1P09884 1462 aaPredicted RBP24.28■■□□□ 1.48
UPF1-211ENST00000600868 CUX2O14529 1486 aa24.27■■□□□ 1.48
UPF1-211ENST00000600868 SOGA1O94964 1423 aa24.2■■□□□ 1.46
UPF1-211ENST00000600868 IFT140Q96RY7 1462 aa24.18■■□□□ 1.46
UPF1-211ENST00000600868 RAD54L2Q9Y4B4 1467 aa24.16■■□□□ 1.46
UPF1-211ENST00000600868 TARBP1Q13395 1621 aaKnown RBP24.15■■□□□ 1.46
UPF1-211ENST00000600868 ABCA10Q8WWZ4 1543 aa24.11■■□□□ 1.45
UPF1-211ENST00000600868 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
UPF1-211ENST00000600868 ZNF608Q9ULD9 1512 aaPredicted RBP24■■□□□ 1.43
UPF1-211ENST00000600868 TDRD9Q8NDG6 1382 aaKnown RBP23.98■■□□□ 1.43
UPF1-211ENST00000600868 KIF27Q86VH2 1401 aa23.97■■□□□ 1.43
UPF1-211ENST00000600868 ABCA5Q8WWZ7 1642 aa23.95■■□□□ 1.42
UPF1-211ENST00000600868 AQRO60306 1485 aaKnown RBP eCLIP23.94■■□□□ 1.421e-8■■■■■ 39.2
UPF1-211ENST00000600868 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
UPF1-211ENST00000600868 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
UPF1-211ENST00000600868 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.42
UPF1-211ENST00000600868 EEA1Q15075 1411 aa23.89■■□□□ 1.41
UPF1-211ENST00000600868 GRIN2BQ13224 1484 aa23.85■■□□□ 1.41
UPF1-211ENST00000600868 ERICH3Q5RHP9 1530 aa23.83■■□□□ 1.41
UPF1-211ENST00000600868 PBRM1Q86U86 1689 aa23.83■■□□□ 1.4
UPF1-211ENST00000600868 IGF1RP08069 1367 aa23.81■■□□□ 1.4
UPF1-211ENST00000600868 CSRNP3Q8WYN3 585 aa23.76■■□□□ 1.39
UPF1-211ENST00000600868 FAM9AQ8IZU1 332 aaPredicted RBP23.75■■□□□ 1.39
UPF1-211ENST00000600868 MAGI1Q96QZ7 1491 aaPredicted RBP23.74■■□□□ 1.39
UPF1-211ENST00000600868 SNAPC4Q5SXM2 1469 aa23.73■■□□□ 1.39
UPF1-211ENST00000600868 CUL7Q14999 1698 aa23.7■■□□□ 1.39
UPF1-211ENST00000600868 FHAD1B1AJZ9 1412 aa23.68■■□□□ 1.38
UPF1-211ENST00000600868 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
UPF1-211ENST00000600868 ADAMTS12P58397 1594 aa23.68■■□□□ 1.38
UPF1-211ENST00000600868 PRXQ9BXM0 1461 aa23.65■■□□□ 1.38
UPF1-211ENST00000600868 SYNJ2O15056 1496 aa23.63■■□□□ 1.37
UPF1-211ENST00000600868 RAPGEF2Q9Y4G8 1499 aa23.59■■□□□ 1.37
UPF1-211ENST00000600868 KIF21BO75037 1637 aa23.58■■□□□ 1.36
UPF1-211ENST00000600868 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
UPF1-211ENST00000600868 GRIN2AQ12879 1464 aa23.55■■□□□ 1.36
UPF1-211ENST00000600868 FBLN2P98095 1184 aa23.53■■□□□ 1.36
UPF1-211ENST00000600868 CHD1O14646 1710 aa23.52■■□□□ 1.36
UPF1-211ENST00000600868 GOLGA3Q08378 1498 aa23.48■■□□□ 1.35
UPF1-211ENST00000600868 NUP160Q12769 1436 aa23.43■■□□□ 1.34
UPF1-211ENST00000600868 CEP170Q5SW79 1584 aa23.39■■□□□ 1.33
UPF1-211ENST00000600868 OSCARQ8IYS5 282 aa23.37■■□□□ 1.33
UPF1-211ENST00000600868 EHMT2Q96KQ7 1210 aa23.37■■□□□ 1.33
UPF1-211ENST00000600868 UBTFP17480 764 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms