RNA–Protein interactions for RNA: ENST00000564068.1

COMMD4-209, Transcript of COMM domain containing 4, humanhuman

Gene COMMD4, Length 4,204 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-209ENST00000564068 NISCHQ9Y2I1 1504 aa22.2■■□□□ 1.14
COMMD4-209ENST00000564068 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1.01
COMMD4-209ENST00000564068 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
COMMD4-209ENST00000564068 SHROOM4Q9ULL8 1493 aa20.86■□□□□ 0.93
COMMD4-209ENST00000564068 PCGF6Q9BYE7 350 aa20.55■□□□□ 0.88
COMMD4-209ENST00000564068 EHMT2Q96KQ7 1210 aa20.21■□□□□ 0.83
COMMD4-209ENST00000564068 HRCP23327 699 aa20.1■□□□□ 0.81
COMMD4-209ENST00000564068 PPARGC1BQ86YN6 1023 aaKnown RBP19.91■□□□□ 0.78
COMMD4-209ENST00000564068 PELP1Q8IZL8 1130 aaKnown RBP19.87■□□□□ 0.77
COMMD4-209ENST00000564068 FAM9AQ8IZU1 332 aaPredicted RBP19.85■□□□□ 0.77
COMMD4-209ENST00000564068 ZEB1P37275 1124 aaPredicted RBP19.67■□□□□ 0.74
COMMD4-209ENST00000564068 TTBK1Q5TCY1 1321 aaPredicted RBP19.62■□□□□ 0.73
COMMD4-209ENST00000564068 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
COMMD4-209ENST00000564068 LOC105371045A0A1W2PR82 267 aa19.59■□□□□ 0.73
COMMD4-209ENST00000564068 CENPBP07199 599 aaPredicted RBP19.53■□□□□ 0.72
COMMD4-209ENST00000564068 TRIM26Q12899 539 aaPredicted RBP19.53■□□□□ 0.72
COMMD4-209ENST00000564068 ABCC9O60706 1549 aa19.53■□□□□ 0.72
COMMD4-209ENST00000564068 CCER1Q8TC90 406 aaPredicted RBP19.49■□□□□ 0.71
COMMD4-209ENST00000564068 TRIM41Q8WV44 630 aa19.42■□□□□ 0.7
COMMD4-209ENST00000564068 YTHDC1Q96MU7 727 aaKnown RBP19.33■□□□□ 0.68
COMMD4-209ENST00000564068 MYT1Q01538 1121 aa19.27■□□□□ 0.67
COMMD4-209ENST00000564068 APLP2Q06481 763 aa19.09■□□□□ 0.65
COMMD4-209ENST00000564068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
COMMD4-209ENST00000564068 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
COMMD4-209ENST00000564068 RANGAP1P46060 587 aaPredicted RBP18.96■□□□□ 0.63
COMMD4-209ENST00000564068 GTF3C3Q9Y5Q9 886 aa18.95■□□□□ 0.62
COMMD4-209ENST00000564068 DIEXFQ68CQ4 756 aaKnown RBP18.93■□□□□ 0.62
COMMD4-209ENST00000564068 UBTFP17480 764 aaKnown RBP18.88■□□□□ 0.61
COMMD4-209ENST00000564068 SCAF1Q9H7N4 1312 aaKnown RBP18.79■□□□□ 0.6
COMMD4-209ENST00000564068 ACIN1Q9UKV3 1341 aaKnown RBP18.78■□□□□ 0.6
COMMD4-209ENST00000564068 ERICH6Q7L0X2 663 aa18.7■□□□□ 0.58
COMMD4-209ENST00000564068 HNRNPUL2Q1KMD3 747 aaKnown RBP18.68■□□□□ 0.58
COMMD4-209ENST00000564068 MYO15BQ96JP2 1530 aa18.68■□□□□ 0.58
COMMD4-209ENST00000564068 NEUROD1Q13562 356 aa18.62■□□□□ 0.57
COMMD4-209ENST00000564068 NEFLP07196 543 aa18.59■□□□□ 0.57
COMMD4-209ENST00000564068 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
COMMD4-209ENST00000564068 ZCCHC6Q5VYS8 1495 aaKnown RBP18.49■□□□□ 0.55
COMMD4-209ENST00000564068 CCDC180Q9P1Z9 1646 aa18.45■□□□□ 0.54
COMMD4-209ENST00000564068 ZNF316A6NFI3 1004 aaPredicted RBP18.43■□□□□ 0.54
COMMD4-209ENST00000564068 ITGAEP38570 1179 aa18.4■□□□□ 0.54
COMMD4-209ENST00000564068 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
COMMD4-209ENST00000564068 BCANQ96GW7 911 aa18.35■□□□□ 0.53
COMMD4-209ENST00000564068 MIER1Q8N108 512 aa18.12■□□□□ 0.49
COMMD4-209ENST00000564068 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
COMMD4-209ENST00000564068 RB1CC1Q8TDY2 1594 aa18.09■□□□□ 0.49
COMMD4-209ENST00000564068 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
COMMD4-209ENST00000564068 CSRNP3Q8WYN3 585 aa17.92■□□□□ 0.46
COMMD4-209ENST00000564068 FKBP8Q14318 412 aa17.92■□□□□ 0.46
COMMD4-209ENST00000564068 NACADO15069 1562 aa17.9■□□□□ 0.46
COMMD4-209ENST00000564068 POLR3GLQ9BT43 218 aa17.88■□□□□ 0.45
COMMD4-209ENST00000564068 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
COMMD4-209ENST00000564068 CDK11AQ9UQ88 783 aaPredicted RBP17.83■□□□□ 0.44
COMMD4-209ENST00000564068 ANP32CO43423 234 aa17.82■□□□□ 0.44
COMMD4-209ENST00000564068 RTL5Q5HYW3 569 aaPredicted RBP17.8■□□□□ 0.44
COMMD4-209ENST00000564068 CLSPNQ9HAW4 1339 aa17.78■□□□□ 0.44
COMMD4-209ENST00000564068 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
COMMD4-209ENST00000564068 DDX10Q13206 875 aaKnown RBP17.75■□□□□ 0.43
COMMD4-209ENST00000564068 TRIM52Q96A61 297 aa17.72■□□□□ 0.43
COMMD4-209ENST00000564068 ANP32EQ9BTT0 268 aa17.72■□□□□ 0.43
COMMD4-209ENST00000564068 DAXXQ9UER7 740 aaPredicted RBP17.68■□□□□ 0.42
COMMD4-209ENST00000564068 SUPT16HQ9Y5B9 1047 aaKnown RBP17.65■□□□□ 0.42
COMMD4-209ENST00000564068 FBLN2P98095 1184 aa17.63■□□□□ 0.41
COMMD4-209ENST00000564068 HIRIP3Q9BW71 556 aaPredicted RBP17.59■□□□□ 0.41
COMMD4-209ENST00000564068 IRX6P78412 446 aaPredicted RBP17.58■□□□□ 0.4
COMMD4-209ENST00000564068 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
COMMD4-209ENST00000564068 HNRNPUQ00839 825 aaKnown RBP eCLIP17.57■□□□□ 0.4
COMMD4-209ENST00000564068 CEP162Q5TB80 1403 aa17.55■□□□□ 0.4
COMMD4-209ENST00000564068 BCL11AQ9H165 835 aa17.54■□□□□ 0.4
COMMD4-209ENST00000564068 NBR1Q14596 966 aa17.5■□□□□ 0.39
COMMD4-209ENST00000564068 P3H3Q8IVL6 736 aa17.48■□□□□ 0.39
COMMD4-209ENST00000564068 NPM2Q86SE8 214 aaKnown RBP17.44■□□□□ 0.38
COMMD4-209ENST00000564068 ANP32AP39687 249 aaKnown RBP17.43■□□□□ 0.38
COMMD4-209ENST00000564068 TSHZ2Q9NRE2 1034 aa17.42■□□□□ 0.38
COMMD4-209ENST00000564068 FAM9BQ8IZU0 186 aa17.41■□□□□ 0.38
COMMD4-209ENST00000564068 ZNF326Q5BKZ1 582 aaKnown RBP17.39■□□□□ 0.38
COMMD4-209ENST00000564068 CLIP1P30622 1438 aa17.39■□□□□ 0.38
COMMD4-209ENST00000564068 TNIKQ9UKE5 1360 aa17.35■□□□□ 0.37
COMMD4-209ENST00000564068 RBM19Q9Y4C8 960 aaKnown RBP17.33■□□□□ 0.37
COMMD4-209ENST00000564068 TONSLQ96HA7 1378 aa17.33■□□□□ 0.36
COMMD4-209ENST00000564068 MROH2BQ7Z745 1585 aa17.33■□□□□ 0.36
COMMD4-209ENST00000564068 EIF5BO60841 1220 aaKnown RBP17.32■□□□□ 0.36
COMMD4-209ENST00000564068 BAZ1BQ9UIG0 1483 aaKnown RBP17.29■□□□□ 0.36
COMMD4-209ENST00000564068 MYT1LQ9UL68 1186 aa17.28■□□□□ 0.36
COMMD4-209ENST00000564068 CCDC136Q96JN2 1154 aa17.26■□□□□ 0.35
COMMD4-209ENST00000564068 ZBTB47Q9UFB7 747 aaPredicted RBP17.26■□□□□ 0.35
COMMD4-209ENST00000564068 SIN3AQ96ST3 1273 aa17.24■□□□□ 0.35
COMMD4-209ENST00000564068 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
COMMD4-209ENST00000564068 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
COMMD4-209ENST00000564068 GOLGA3Q08378 1498 aa17.23■□□□□ 0.35
COMMD4-209ENST00000564068 SOGA1O94964 1423 aa17.23■□□□□ 0.35
COMMD4-209ENST00000564068 ARID3CA6NKF2 412 aa17.23■□□□□ 0.35
COMMD4-209ENST00000564068 MRS2Q9HD23 443 aa17.22■□□□□ 0.35
COMMD4-209ENST00000564068 SENP3-EIF4A1A0A087X0R7 540 aa17.21■□□□□ 0.35
COMMD4-209ENST00000564068 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
COMMD4-209ENST00000564068 SALL2Q9Y467 1007 aaPredicted RBP17.2■□□□□ 0.34
COMMD4-209ENST00000564068 DNAJC5BQ9UF47 199 aa17.2■□□□□ 0.34
COMMD4-209ENST00000564068 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.34
COMMD4-209ENST00000564068 EEA1Q15075 1411 aa17.16■□□□□ 0.34
COMMD4-209ENST00000564068 B4GALNT3Q6L9W6 998 aa17.12■□□□□ 0.33
COMMD4-209ENST00000564068 CHIC2Q9UKJ5 165 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms