RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 NISCHQ9Y2I1 1504 aa40.94■■■■■ 4.14
COMMD4-208ENST00000563220 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.28
COMMD4-208ENST00000563220 ZCCHC6Q5VYS8 1495 aaKnown RBP34.37■■■■□ 3.09
COMMD4-208ENST00000563220 DCAF8L2P0C7V8 631 aa33.95■■■■□ 3.03
COMMD4-208ENST00000563220 ABCC9O60706 1549 aa33.84■■■■□ 3.01
COMMD4-208ENST00000563220 DCAF1Q9Y4B6 1507 aa33.8■■■■□ 3
COMMD4-208ENST00000563220 SHROOM4Q9ULL8 1493 aa33.49■■■□□ 2.95
COMMD4-208ENST00000563220 MYO15BQ96JP2 1530 aa33.4■■■□□ 2.94
COMMD4-208ENST00000563220 NACADO15069 1562 aa33.21■■■□□ 2.91
COMMD4-208ENST00000563220 RB1CC1Q8TDY2 1594 aa32.92■■■□□ 2.86
COMMD4-208ENST00000563220 SCRIBQ14160 1630 aa32.82■■■□□ 2.85
COMMD4-208ENST00000563220 SUPT5HO00267 1087 aaKnown RBP32.22■■■□□ 2.75
COMMD4-208ENST00000563220 UNC13AQ9UPW8 1703 aa32.22■■■□□ 2.75
COMMD4-208ENST00000563220 PABPN1Q86U42 306 aaKnown RBP eCLIP32■■■□□ 2.71
COMMD4-208ENST00000563220 BICRAQ9NZM4 1560 aa31.99■■■□□ 2.71
COMMD4-208ENST00000563220 CECR2Q9BXF3 1484 aa31.89■■■□□ 2.7
COMMD4-208ENST00000563220 RSF1Q96T23 1441 aaPredicted RBP31.8■■■□□ 2.68
COMMD4-208ENST00000563220 MROH2BQ7Z745 1585 aa31.66■■■□□ 2.66
COMMD4-208ENST00000563220 BAZ1AQ9NRL2 1556 aaPredicted RBP31.57■■■□□ 2.64
COMMD4-208ENST00000563220 SMARCA4P51532 1647 aa31.44■■■□□ 2.62
COMMD4-208ENST00000563220 WIZO95785 1651 aa31.36■■■□□ 2.61
COMMD4-208ENST00000563220 PEG3Q9GZU2 1588 aa31.04■■■□□ 2.56
COMMD4-208ENST00000563220 EIF4G1Q04637 1599 aaKnown RBP31.01■■■□□ 2.56
COMMD4-208ENST00000563220 TOP2AP11388 1531 aaKnown RBP31.01■■■□□ 2.55
COMMD4-208ENST00000563220 ATAD2BQ9ULI0 1458 aa30.99■■■□□ 2.55
COMMD4-208ENST00000563220 SMARCA2P51531 1590 aa30.9■■■□□ 2.54
COMMD4-208ENST00000563220 CHIC1Q5VXU3 224 aa30.83■■■□□ 2.53
COMMD4-208ENST00000563220 BAZ1BQ9UIG0 1483 aaKnown RBP30.78■■■□□ 2.52
COMMD4-208ENST00000563220 CCDC88BA6NC98 1476 aa30.77■■■□□ 2.52
COMMD4-208ENST00000563220 NCAPD3P42695 1498 aa30.72■■■□□ 2.51
COMMD4-208ENST00000563220 HMGXB3Q12766 1538 aa30.6■■■□□ 2.49
COMMD4-208ENST00000563220 CC2D2AQ9P2K1 1620 aa30.56■■■□□ 2.48
COMMD4-208ENST00000563220 TRIM41Q8WV44 630 aa30.26■■■□□ 2.43
COMMD4-208ENST00000563220 ABCC8Q09428 1581 aa30.09■■■□□ 2.41
COMMD4-208ENST00000563220 CFTRP13569 1480 aa30.03■■■□□ 2.4
COMMD4-208ENST00000563220 DNAJC5BQ9UF47 199 aa30.02■■■□□ 2.4
COMMD4-208ENST00000563220 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
COMMD4-208ENST00000563220 WRNQ14191 1432 aaPredicted RBP eCLIP29.9■■■□□ 2.38
COMMD4-208ENST00000563220 SYNJ1O43426 1573 aa29.76■■■□□ 2.35
COMMD4-208ENST00000563220 FAM9AQ8IZU1 332 aaPredicted RBP29.76■■■□□ 2.35
COMMD4-208ENST00000563220 NESP48681 1621 aa29.72■■■□□ 2.35
COMMD4-208ENST00000563220 LOC105371045A0A1W2PR82 267 aa29.7■■■□□ 2.34
COMMD4-208ENST00000563220 PRDM2Q13029 1718 aa29.68■■■□□ 2.34
COMMD4-208ENST00000563220 TOP2BQ02880 1626 aa29.61■■■□□ 2.33
COMMD4-208ENST00000563220 LAMC3Q9Y6N6 1575 aa29.6■■■□□ 2.33
COMMD4-208ENST00000563220 FANCD2Q9BXW9 1451 aa29.6■■■□□ 2.33
COMMD4-208ENST00000563220 CUX1P39880 1505 aa29.59■■■□□ 2.33
COMMD4-208ENST00000563220 SOGA1O94964 1423 aa29.58■■■□□ 2.33
COMMD4-208ENST00000563220 BIVM-ERCC5R4GMW8 1640 aa29.54■■■□□ 2.32
COMMD4-208ENST00000563220 RUSC2Q8N2Y8 1516 aa29.48■■■□□ 2.31
COMMD4-208ENST00000563220 PDS5BQ9NTI5 1447 aa29.44■■■□□ 2.3
COMMD4-208ENST00000563220 EEA1Q15075 1411 aa29.41■■■□□ 2.3
COMMD4-208ENST00000563220 CEP164Q9UPV0 1460 aa29.38■■■□□ 2.29
COMMD4-208ENST00000563220 EHMT2Q96KQ7 1210 aa29.37■■■□□ 2.29
COMMD4-208ENST00000563220 CSRNP3Q8WYN3 585 aa29.36■■■□□ 2.29
COMMD4-208ENST00000563220 DNMBPQ6XZF7 1577 aa29.27■■■□□ 2.28
COMMD4-208ENST00000563220 TOPBP1Q92547 1522 aa29.27■■■□□ 2.28
COMMD4-208ENST00000563220 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
COMMD4-208ENST00000563220 URB2Q14146 1524 aaKnown RBP29.24■■■□□ 2.27
COMMD4-208ENST00000563220 KIF21AQ7Z4S6 1674 aa29.24■■■□□ 2.27
COMMD4-208ENST00000563220 KIF27Q86VH2 1401 aa29.14■■■□□ 2.25
COMMD4-208ENST00000563220 POLA1P09884 1462 aaPredicted RBP29.14■■■□□ 2.25
COMMD4-208ENST00000563220 RAD54L2Q9Y4B4 1467 aa29.09■■■□□ 2.25
COMMD4-208ENST00000563220 CUX2O14529 1486 aa29.08■■■□□ 2.25
COMMD4-208ENST00000563220 MRC2Q9UBG0 1479 aa29.05■■■□□ 2.24
COMMD4-208ENST00000563220 GOLGA3Q08378 1498 aa29.02■■■□□ 2.24
COMMD4-208ENST00000563220 KIF21BO75037 1637 aa29■■■□□ 2.23
COMMD4-208ENST00000563220 ABCA10Q8WWZ4 1543 aa28.99■■■□□ 2.23
COMMD4-208ENST00000563220 UBTFP17480 764 aaKnown RBP28.98■■■□□ 2.23
COMMD4-208ENST00000563220 TNIKQ9UKE5 1360 aa28.97■■■□□ 2.23
COMMD4-208ENST00000563220 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
COMMD4-208ENST00000563220 PRXQ9BXM0 1461 aa28.95■■■□□ 2.23
COMMD4-208ENST00000563220 IGF1RP08069 1367 aa28.95■■■□□ 2.23
COMMD4-208ENST00000563220 RAPGEF2Q9Y4G8 1499 aa28.95■■■□□ 2.22
COMMD4-208ENST00000563220 WDR62O43379 1518 aa28.88■■■□□ 2.21
COMMD4-208ENST00000563220 TDRD9Q8NDG6 1382 aaKnown RBP28.83■■■□□ 2.21
COMMD4-208ENST00000563220 ERICH3Q5RHP9 1530 aa28.82■■■□□ 2.2
COMMD4-208ENST00000563220 WDR97A6NE52 1622 aa28.82■■■□□ 2.2
COMMD4-208ENST00000563220 CEP162Q5TB80 1403 aa28.8■■■□□ 2.2
COMMD4-208ENST00000563220 TARBP1Q13395 1621 aaKnown RBP28.8■■■□□ 2.2
COMMD4-208ENST00000563220 CARMIL1Q5VZK9 1371 aa28.78■■■□□ 2.2
COMMD4-208ENST00000563220 THOC2Q8NI27 1593 aaKnown RBP28.78■■■□□ 2.2
COMMD4-208ENST00000563220 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
COMMD4-208ENST00000563220 ABCA5Q8WWZ7 1642 aa28.71■■■□□ 2.19
COMMD4-208ENST00000563220 IFT140Q96RY7 1462 aa28.69■■■□□ 2.18
COMMD4-208ENST00000563220 AQRO60306 1485 aaKnown RBP eCLIP28.64■■■□□ 2.17
COMMD4-208ENST00000563220 ZNF608Q9ULD9 1512 aaPredicted RBP28.6■■■□□ 2.17
COMMD4-208ENST00000563220 CLIP1P30622 1438 aa28.6■■■□□ 2.17
COMMD4-208ENST00000563220 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
COMMD4-208ENST00000563220 CUL7Q14999 1698 aa28.56■■■□□ 2.16
COMMD4-208ENST00000563220 GRIN2BQ13224 1484 aa28.48■■■□□ 2.15
COMMD4-208ENST00000563220 PBRM1Q86U86 1689 aa28.45■■■□□ 2.14
COMMD4-208ENST00000563220 FHAD1B1AJZ9 1412 aa28.41■■■□□ 2.14
COMMD4-208ENST00000563220 EIF4G3O43432 1585 aaKnown RBP28.4■■■□□ 2.14
COMMD4-208ENST00000563220 ADAMTS12P58397 1594 aa28.34■■■□□ 2.13
COMMD4-208ENST00000563220 ARHGAP35Q9NRY4 1499 aa28.33■■■□□ 2.13
COMMD4-208ENST00000563220 VPS8Q8N3P4 1428 aa28.32■■■□□ 2.12
COMMD4-208ENST00000563220 ARAP1Q96P48 1450 aa28.32■■■□□ 2.12
COMMD4-208ENST00000563220 SNAPC4Q5SXM2 1469 aa28.31■■■□□ 2.12
COMMD4-208ENST00000563220 PPARGC1BQ86YN6 1023 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms