RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
PHGDH-212ENST00000641247 ABCC9O60706 1549 aa23.31■■□□□ 1.32
PHGDH-212ENST00000641247 CCDC180Q9P1Z9 1646 aa22.55■■□□□ 1.2
PHGDH-212ENST00000641247 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
PHGDH-212ENST00000641247 RB1CC1Q8TDY2 1594 aa21.79■■□□□ 1.08
PHGDH-212ENST00000641247 PABPN1Q86U42 306 aaKnown RBP eCLIP21.73■■□□□ 1.07
PHGDH-212ENST00000641247 NACADO15069 1562 aa21.53■■□□□ 1.04
PHGDH-212ENST00000641247 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
PHGDH-212ENST00000641247 BICRAQ9NZM4 1560 aa21.31■■□□□ 1
PHGDH-212ENST00000641247 UNC13AQ9UPW8 1703 aa21.26■□□□□ 0.99
PHGDH-212ENST00000641247 MYO15BQ96JP2 1530 aa21.06■□□□□ 0.96
PHGDH-212ENST00000641247 CECR2Q9BXF3 1484 aa21.02■□□□□ 0.96
PHGDH-212ENST00000641247 CC2D2AQ9P2K1 1620 aa20.96■□□□□ 0.95
PHGDH-212ENST00000641247 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
PHGDH-212ENST00000641247 EIF4G1Q04637 1599 aaKnown RBP20.78■□□□□ 0.92
PHGDH-212ENST00000641247 SHROOM4Q9ULL8 1493 aa20.78■□□□□ 0.92
PHGDH-212ENST00000641247 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
PHGDH-212ENST00000641247 SCRIBQ14160 1630 aa20.65■□□□□ 0.9
PHGDH-212ENST00000641247 DCAF1Q9Y4B6 1507 aa20.61■□□□□ 0.89
PHGDH-212ENST00000641247 CUX2O14529 1486 aa20.19■□□□□ 0.82
PHGDH-212ENST00000641247 ERCC6Q03468 1493 aa20.06■□□□□ 0.8
PHGDH-212ENST00000641247 NCAPD3P42695 1498 aa19.99■□□□□ 0.79
PHGDH-212ENST00000641247 NESP48681 1621 aa19.91■□□□□ 0.78
PHGDH-212ENST00000641247 ATAD2BQ9ULI0 1458 aa19.87■□□□□ 0.77
PHGDH-212ENST00000641247 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
PHGDH-212ENST00000641247 HMGXB3Q12766 1538 aa19.68■□□□□ 0.74
PHGDH-212ENST00000641247 THOC2Q8NI27 1593 aaKnown RBP19.68■□□□□ 0.74
PHGDH-212ENST00000641247 SMARCA2P51531 1590 aa19.66■□□□□ 0.74
PHGDH-212ENST00000641247 SMARCA4P51532 1647 aa19.62■□□□□ 0.73
PHGDH-212ENST00000641247 BAZ1BQ9UIG0 1483 aaKnown RBP19.57■□□□□ 0.72
PHGDH-212ENST00000641247 LAMC3Q9Y6N6 1575 aa19.5■□□□□ 0.71
PHGDH-212ENST00000641247 PDS5BQ9NTI5 1447 aa19.47■□□□□ 0.71
PHGDH-212ENST00000641247 KIF21AQ7Z4S6 1674 aa19.46■□□□□ 0.71
PHGDH-212ENST00000641247 PEG3Q9GZU2 1588 aa19.43■□□□□ 0.7
PHGDH-212ENST00000641247 BAZ1AQ9NRL2 1556 aaPredicted RBP19.43■□□□□ 0.7
PHGDH-212ENST00000641247 MROH2BQ7Z745 1585 aa19.38■□□□□ 0.69
PHGDH-212ENST00000641247 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
PHGDH-212ENST00000641247 MRC2Q9UBG0 1479 aa19.34■□□□□ 0.69
PHGDH-212ENST00000641247 WDR62O43379 1518 aa19.3■□□□□ 0.68
PHGDH-212ENST00000641247 OSCARQ8IYS5 282 aa19.29■□□□□ 0.68
PHGDH-212ENST00000641247 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
PHGDH-212ENST00000641247 FANCD2Q9BXW9 1451 aa19.12■□□□□ 0.65
PHGDH-212ENST00000641247 WIZO95785 1651 aa19.07■□□□□ 0.64
PHGDH-212ENST00000641247 URB2Q14146 1524 aaKnown RBP19.03■□□□□ 0.64
PHGDH-212ENST00000641247 CFTRP13569 1480 aa19.03■□□□□ 0.64
PHGDH-212ENST00000641247 RIMBP3CA6NJZ7 1639 aa19.01■□□□□ 0.63
PHGDH-212ENST00000641247 RIMBP3BA6NNM3 1639 aa19.01■□□□□ 0.63
PHGDH-212ENST00000641247 RIMBP3Q9UFD9 1639 aa19.01■□□□□ 0.63
PHGDH-212ENST00000641247 ARHGEF11O15085 1522 aa18.94■□□□□ 0.62
PHGDH-212ENST00000641247 CYB5RLQ6IPT4 315 aa18.93■□□□□ 0.62
PHGDH-212ENST00000641247 ZNF608Q9ULD9 1512 aaPredicted RBP18.93■□□□□ 0.62
PHGDH-212ENST00000641247 TRHP20396 242 aaPredicted RBP18.84■□□□□ 0.61
PHGDH-212ENST00000641247 RSF1Q96T23 1441 aaPredicted RBP18.8■□□□□ 0.6
PHGDH-212ENST00000641247 IFT140Q96RY7 1462 aa18.79■□□□□ 0.6
PHGDH-212ENST00000641247 ARAP1Q96P48 1450 aa18.75■□□□□ 0.59
PHGDH-212ENST00000641247 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
PHGDH-212ENST00000641247 AQRO60306 1485 aaKnown RBP eCLIP18.7■□□□□ 0.583e-7■□□□□ 10.7
PHGDH-212ENST00000641247 TOPBP1Q92547 1522 aa18.69■□□□□ 0.58
PHGDH-212ENST00000641247 FBLN2P98095 1184 aa18.66■□□□□ 0.58
PHGDH-212ENST00000641247 CCDC88BA6NC98 1476 aa18.65■□□□□ 0.58
PHGDH-212ENST00000641247 EIF4G3O43432 1585 aaKnown RBP18.64■□□□□ 0.58
PHGDH-212ENST00000641247 AEBP2Q6ZN18 517 aaPredicted RBP18.62■□□□□ 0.57
PHGDH-212ENST00000641247 CHD1O14646 1710 aa18.57■□□□□ 0.56
PHGDH-212ENST00000641247 TARBP1Q13395 1621 aaKnown RBP18.55■□□□□ 0.56
PHGDH-212ENST00000641247 ABCC8Q09428 1581 aa18.52■□□□□ 0.56
PHGDH-212ENST00000641247 PRDM2Q13029 1718 aa18.52■□□□□ 0.55
PHGDH-212ENST00000641247 DNMBPQ6XZF7 1577 aa18.51■□□□□ 0.55
PHGDH-212ENST00000641247 TDRD9Q8NDG6 1382 aaKnown RBP18.51■□□□□ 0.55
PHGDH-212ENST00000641247 RAD54L2Q9Y4B4 1467 aa18.51■□□□□ 0.55
PHGDH-212ENST00000641247 POLA1P09884 1462 aaPredicted RBP18.49■□□□□ 0.55
PHGDH-212ENST00000641247 CLASP1Q7Z460 1538 aa18.43■□□□□ 0.54
PHGDH-212ENST00000641247 SOGA1O94964 1423 aa18.41■□□□□ 0.54
PHGDH-212ENST00000641247 SNAPC4Q5SXM2 1469 aa18.41■□□□□ 0.54
PHGDH-212ENST00000641247 CHMP7Q8WUX9 453 aaPredicted RBP18.4■□□□□ 0.54
PHGDH-212ENST00000641247 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
PHGDH-212ENST00000641247 FGD5Q6ZNL6 1462 aa18.29■□□□□ 0.52
PHGDH-212ENST00000641247 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
PHGDH-212ENST00000641247 MAGI1Q96QZ7 1491 aaPredicted RBP18.27■□□□□ 0.52
PHGDH-212ENST00000641247 SYNJ2O15056 1496 aa18.26■□□□□ 0.51
PHGDH-212ENST00000641247 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
PHGDH-212ENST00000641247 CUX1P39880 1505 aa18.21■□□□□ 0.51
PHGDH-212ENST00000641247 ERCC6L2Q5T890 1561 aa18.21■□□□□ 0.51
PHGDH-212ENST00000641247 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
PHGDH-212ENST00000641247 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
PHGDH-212ENST00000641247 ABCA10Q8WWZ4 1543 aa18.03■□□□□ 0.48
PHGDH-212ENST00000641247 PBRM1Q86U86 1689 aa18.03■□□□□ 0.48
PHGDH-212ENST00000641247 GRIN2AQ12879 1464 aa18.03■□□□□ 0.48
PHGDH-212ENST00000641247 NUP160Q12769 1436 aa18.02■□□□□ 0.48
PHGDH-212ENST00000641247 KDM4FA0A1W2PPD8 638 aa18.01■□□□□ 0.47
PHGDH-212ENST00000641247 ABCA5Q8WWZ7 1642 aa18.01■□□□□ 0.47
PHGDH-212ENST00000641247 ILDR1Q86SU0 546 aaPredicted RBP17.99■□□□□ 0.47
PHGDH-212ENST00000641247 FAM69CQ0P6D2 419 aa17.96■□□□□ 0.47
PHGDH-212ENST00000641247 KIF13AQ9H1H9 1805 aa17.93■□□□□ 0.46
PHGDH-212ENST00000641247 SHROOM2Q13796 1616 aa17.92■□□□□ 0.46
PHGDH-212ENST00000641247 ADAMTS12P58397 1594 aa17.91■□□□□ 0.46
PHGDH-212ENST00000641247 PRG4Q92954 1404 aaPredicted RBP17.9■□□□□ 0.46
PHGDH-212ENST00000641247 JPH4Q96JJ6 628 aa17.9■□□□□ 0.46
PHGDH-212ENST00000641247 ABCC10Q5T3U5 1492 aa17.88■□□□□ 0.45
PHGDH-212ENST00000641247 FHAD1B1AJZ9 1412 aa17.88■□□□□ 0.45
PHGDH-212ENST00000641247 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms