RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NISCHQ9Y2I1 1504 aa46.34■■■■■ 5.01
UPF1-209ENST00000600310 CCDC180Q9P1Z9 1646 aa40.98■■■■■ 4.15
UPF1-209ENST00000600310 ABCC9O60706 1549 aa39.81■■■■□ 3.96
UPF1-209ENST00000600310 ZCCHC6Q5VYS8 1495 aaKnown RBP38.68■■■■□ 3.78
UPF1-209ENST00000600310 DCAF8L2P0C7V8 631 aa38.59■■■■□ 3.77
UPF1-209ENST00000600310 NACADO15069 1562 aa38.5■■■■□ 3.75
UPF1-209ENST00000600310 RB1CC1Q8TDY2 1594 aa38.43■■■■□ 3.74
UPF1-209ENST00000600310 MYO15BQ96JP2 1530 aa38.42■■■■□ 3.74
UPF1-209ENST00000600310 DCAF1Q9Y4B6 1507 aa38.38■■■■□ 3.73
UPF1-209ENST00000600310 UNC13AQ9UPW8 1703 aa37.47■■■■□ 3.59
UPF1-209ENST00000600310 SCRIBQ14160 1630 aa37.43■■■■□ 3.58
UPF1-209ENST00000600310 PABPN1Q86U42 306 aaKnown RBP eCLIP37.3■■■■□ 3.56
UPF1-209ENST00000600310 BICRAQ9NZM4 1560 aa37.26■■■■□ 3.56
UPF1-209ENST00000600310 DNAJC5BQ9UF47 199 aa37.02■■■■□ 3.52
UPF1-209ENST00000600310 SHROOM4Q9ULL8 1493 aa36.93■■■■□ 3.5
UPF1-209ENST00000600310 EIF4G1Q04637 1599 aaKnown RBP36.25■■■■□ 3.39
UPF1-209ENST00000600310 CECR2Q9BXF3 1484 aa36.07■■■■□ 3.37
UPF1-209ENST00000600310 CC2D2AQ9P2K1 1620 aa36.01■■■■□ 3.35
UPF1-209ENST00000600310 BAZ1AQ9NRL2 1556 aaPredicted RBP35.88■■■■□ 3.33
UPF1-209ENST00000600310 SMARCA4P51532 1647 aa35.84■■■■□ 3.33
UPF1-209ENST00000600310 MROH2BQ7Z745 1585 aa35.72■■■■□ 3.31
UPF1-209ENST00000600310 ATAD2BQ9ULI0 1458 aa35.62■■■■□ 3.29
UPF1-209ENST00000600310 SMARCA2P51531 1590 aa35.56■■■■□ 3.28
UPF1-209ENST00000600310 NCAPD3P42695 1498 aa35.56■■■■□ 3.28
UPF1-209ENST00000600310 PEG3Q9GZU2 1588 aa35.52■■■■□ 3.28
UPF1-209ENST00000600310 RSF1Q96T23 1441 aaPredicted RBP35.47■■■■□ 3.27
UPF1-209ENST00000600310 HMGXB3Q12766 1538 aa35.37■■■■□ 3.25
UPF1-209ENST00000600310 BAZ1BQ9UIG0 1483 aaKnown RBP35.32■■■■□ 3.24
UPF1-209ENST00000600310 WIZO95785 1651 aa35.3■■■■□ 3.24
UPF1-209ENST00000600310 TOP2AP11388 1531 aaKnown RBP34.98■■■■□ 3.19
UPF1-209ENST00000600310 SUPT5HO00267 1087 aaKnown RBP34.82■■■■□ 3.16
UPF1-209ENST00000600310 CCDC88BA6NC98 1476 aa34.59■■■■□ 3.13
UPF1-209ENST00000600310 CADPSQ9ULU8 1353 aa34.55■■■■□ 3.12
UPF1-209ENST00000600310 NESP48681 1621 aa34.55■■■■□ 3.12
UPF1-209ENST00000600310 LAMC3Q9Y6N6 1575 aa34.51■■■■□ 3.12
UPF1-209ENST00000600310 CFTRP13569 1480 aa34.4■■■■□ 3.1
UPF1-209ENST00000600310 PDS5BQ9NTI5 1447 aa34.31■■■■□ 3.08
UPF1-209ENST00000600310 ERCC6Q03468 1493 aa34.28■■■■□ 3.08
UPF1-209ENST00000600310 FANCD2Q9BXW9 1451 aa34.12■■■■□ 3.05
UPF1-209ENST00000600310 KIF21AQ7Z4S6 1674 aa34.07■■■■□ 3.04
UPF1-209ENST00000600310 DNAJC5Q9H3Z4 198 aa34.04■■■■□ 3.04
UPF1-209ENST00000600310 CEP164Q9UPV0 1460 aa34.03■■■■□ 3.04
UPF1-209ENST00000600310 PRDM2Q13029 1718 aa34.02■■■■□ 3.04
UPF1-209ENST00000600310 CUX2O14529 1486 aa33.96■■■■□ 3.03
UPF1-209ENST00000600310 MRC2Q9UBG0 1479 aa33.92■■■■□ 3.02
UPF1-209ENST00000600310 THOC2Q8NI27 1593 aaKnown RBP33.92■■■■□ 3.02
UPF1-209ENST00000600310 WDR62O43379 1518 aa33.79■■■■□ 3
UPF1-209ENST00000600310 URB2Q14146 1524 aaKnown RBP33.75■■■□□ 2.99
UPF1-209ENST00000600310 ABCC8Q09428 1581 aa33.64■■■□□ 2.98
UPF1-209ENST00000600310 TOPBP1Q92547 1522 aa33.61■■■□□ 2.97
UPF1-209ENST00000600310 DNMBPQ6XZF7 1577 aa33.58■■■□□ 2.97
UPF1-209ENST00000600310 CUX1P39880 1505 aa33.48■■■□□ 2.95
UPF1-209ENST00000600310 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
UPF1-209ENST00000600310 POLA1P09884 1462 aaPredicted RBP33.35■■■□□ 2.93
UPF1-209ENST00000600310 IFT140Q96RY7 1462 aa33.32■■■□□ 2.92
UPF1-209ENST00000600310 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
UPF1-209ENST00000600310 SYNJ1O43426 1573 aa33.26■■■□□ 2.92
UPF1-209ENST00000600310 TOP2BQ02880 1626 aa33.26■■■□□ 2.91
UPF1-209ENST00000600310 SOGA1O94964 1423 aa33.25■■■□□ 2.91
UPF1-209ENST00000600310 BIVM-ERCC5R4GMW8 1640 aa33.24■■■□□ 2.91
UPF1-209ENST00000600310 RAD54L2Q9Y4B4 1467 aa33.2■■■□□ 2.91
UPF1-209ENST00000600310 TARBP1Q13395 1621 aaKnown RBP33.18■■■□□ 2.9
UPF1-209ENST00000600310 ZNF608Q9ULD9 1512 aaPredicted RBP33.12■■■□□ 2.89
UPF1-209ENST00000600310 ABCA10Q8WWZ4 1543 aa33.02■■■□□ 2.88
UPF1-209ENST00000600310 TDRD9Q8NDG6 1382 aaKnown RBP33.01■■■□□ 2.88
UPF1-209ENST00000600310 AQRO60306 1485 aaKnown RBP eCLIP33■■■□□ 2.879e-9■■■■■ 44.1
UPF1-209ENST00000600310 EIF4G3O43432 1585 aaKnown RBP32.96■■■□□ 2.87
UPF1-209ENST00000600310 WDR97A6NE52 1622 aa32.95■■■□□ 2.87
UPF1-209ENST00000600310 TRIM41Q8WV44 630 aa32.89■■■□□ 2.86
UPF1-209ENST00000600310 GAPVD1Q14C86 1478 aa32.85■■■□□ 2.85
UPF1-209ENST00000600310 ABCA5Q8WWZ7 1642 aa32.81■■■□□ 2.84
UPF1-209ENST00000600310 GRIN2BQ13224 1484 aa32.8■■■□□ 2.84
UPF1-209ENST00000600310 CHIC1Q5VXU3 224 aa32.73■■■□□ 2.83
UPF1-209ENST00000600310 KIF27Q86VH2 1401 aa32.7■■■□□ 2.83
UPF1-209ENST00000600310 SNAPC4Q5SXM2 1469 aa32.69■■■□□ 2.82
UPF1-209ENST00000600310 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
UPF1-209ENST00000600310 PBRM1Q86U86 1689 aa32.66■■■□□ 2.82
UPF1-209ENST00000600310 ERICH3Q5RHP9 1530 aa32.62■■■□□ 2.81
UPF1-209ENST00000600310 IGF1RP08069 1367 aa32.55■■■□□ 2.8
UPF1-209ENST00000600310 SYNJ2O15056 1496 aa32.54■■■□□ 2.8
UPF1-209ENST00000600310 FBLN2P98095 1184 aa32.53■■■□□ 2.8
UPF1-209ENST00000600310 CHMP7Q8WUX9 453 aaPredicted RBP32.53■■■□□ 2.8
UPF1-209ENST00000600310 OSCARQ8IYS5 282 aa32.52■■■□□ 2.8
UPF1-209ENST00000600310 FHAD1B1AJZ9 1412 aa32.5■■■□□ 2.79
UPF1-209ENST00000600310 RUSC2Q8N2Y8 1516 aa32.49■■■□□ 2.79
UPF1-209ENST00000600310 ADAMTS12P58397 1594 aa32.48■■■□□ 2.79
UPF1-209ENST00000600310 CHD1O14646 1710 aa32.44■■■□□ 2.78
UPF1-209ENST00000600310 GRIN2AQ12879 1464 aa32.37■■■□□ 2.77
UPF1-209ENST00000600310 CARMIL1Q5VZK9 1371 aa32.35■■■□□ 2.77
UPF1-209ENST00000600310 CUL7Q14999 1698 aa32.35■■■□□ 2.77
UPF1-209ENST00000600310 EEA1Q15075 1411 aa32.32■■■□□ 2.76
UPF1-209ENST00000600310 CSRNP3Q8WYN3 585 aa32.25■■■□□ 2.75
UPF1-209ENST00000600310 NUP160Q12769 1436 aa32.24■■■□□ 2.75
UPF1-209ENST00000600310 PRXQ9BXM0 1461 aa32.17■■■□□ 2.74
UPF1-209ENST00000600310 RAPGEF2Q9Y4G8 1499 aa32.17■■■□□ 2.74
UPF1-209ENST00000600310 CLASP1Q7Z460 1538 aa32.17■■■□□ 2.74
UPF1-209ENST00000600310 CEP170Q5SW79 1584 aa32.17■■■□□ 2.74
UPF1-209ENST00000600310 FAM9AQ8IZU1 332 aaPredicted RBP32.17■■■□□ 2.74
UPF1-209ENST00000600310 KIAA0586Q9BVV6 1533 aa32.01■■■□□ 2.72
UPF1-209ENST00000600310 RIMBP3CA6NJZ7 1639 aa31.96■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms