RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 NISCHQ9Y2I1 1504 aa33.18■■■□□ 2.9
COMMD4-221ENST00000567935 ABCC9O60706 1549 aa31.22■■■□□ 2.59
COMMD4-221ENST00000567935 DNAJC5BQ9UF47 199 aa30.21■■■□□ 2.43
COMMD4-221ENST00000567935 CCDC180Q9P1Z9 1646 aa30.16■■■□□ 2.42
COMMD4-221ENST00000567935 RB1CC1Q8TDY2 1594 aa29.2■■■□□ 2.26
COMMD4-221ENST00000567935 PABPN1Q86U42 306 aaKnown RBP eCLIP28.92■■■□□ 2.22
COMMD4-221ENST00000567935 NACADO15069 1562 aa28.75■■■□□ 2.19
COMMD4-221ENST00000567935 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
COMMD4-221ENST00000567935 BICRAQ9NZM4 1560 aa28.46■■■□□ 2.15
COMMD4-221ENST00000567935 DCAF8L2P0C7V8 631 aa28.42■■■□□ 2.14
COMMD4-221ENST00000567935 DNAJC5Q9H3Z4 198 aa28.39■■■□□ 2.14
COMMD4-221ENST00000567935 CECR2Q9BXF3 1484 aa28.2■■■□□ 2.1
COMMD4-221ENST00000567935 CC2D2AQ9P2K1 1620 aa28.13■■■□□ 2.09
COMMD4-221ENST00000567935 MYO15BQ96JP2 1530 aa28.01■■■□□ 2.07
COMMD4-221ENST00000567935 SHROOM4Q9ULL8 1493 aa27.88■■■□□ 2.05
COMMD4-221ENST00000567935 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
COMMD4-221ENST00000567935 ZCCHC6Q5VYS8 1495 aaKnown RBP27.51■■■□□ 2
COMMD4-221ENST00000567935 SCRIBQ14160 1630 aa27.49■■□□□ 1.99
COMMD4-221ENST00000567935 DCAF1Q9Y4B6 1507 aa27.3■■□□□ 1.96
COMMD4-221ENST00000567935 CUX2O14529 1486 aa27.25■■□□□ 1.95
COMMD4-221ENST00000567935 ERCC6Q03468 1493 aa26.98■■□□□ 1.91
COMMD4-221ENST00000567935 TRIM41Q8WV44 630 aa26.77■■□□□ 1.88
COMMD4-221ENST00000567935 NCAPD3P42695 1498 aa26.58■■□□□ 1.85
COMMD4-221ENST00000567935 NESP48681 1621 aa26.55■■□□□ 1.84
COMMD4-221ENST00000567935 THOC2Q8NI27 1593 aaKnown RBP26.46■■□□□ 1.83
COMMD4-221ENST00000567935 ATAD2BQ9ULI0 1458 aa26.38■■□□□ 1.81
COMMD4-221ENST00000567935 HMGXB3Q12766 1538 aa26.29■■□□□ 1.8
COMMD4-221ENST00000567935 SMARCA2P51531 1590 aa26.25■■□□□ 1.79
COMMD4-221ENST00000567935 KIF21AQ7Z4S6 1674 aa26.13■■□□□ 1.77
COMMD4-221ENST00000567935 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
COMMD4-221ENST00000567935 SMARCA4P51532 1647 aa26.1■■□□□ 1.77
COMMD4-221ENST00000567935 BAZ1BQ9UIG0 1483 aaKnown RBP26.05■■□□□ 1.76
COMMD4-221ENST00000567935 PDS5BQ9NTI5 1447 aa26■■□□□ 1.75
COMMD4-221ENST00000567935 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.74
COMMD4-221ENST00000567935 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
COMMD4-221ENST00000567935 WDR62O43379 1518 aa25.85■■□□□ 1.73
COMMD4-221ENST00000567935 PEG3Q9GZU2 1588 aa25.83■■□□□ 1.73
COMMD4-221ENST00000567935 OSCARQ8IYS5 282 aa25.83■■□□□ 1.73
COMMD4-221ENST00000567935 CADPSQ9ULU8 1353 aa25.72■■□□□ 1.71
COMMD4-221ENST00000567935 RIMBP3CA6NJZ7 1639 aa25.66■■□□□ 1.7
COMMD4-221ENST00000567935 RIMBP3BA6NNM3 1639 aa25.66■■□□□ 1.7
COMMD4-221ENST00000567935 RIMBP3Q9UFD9 1639 aa25.66■■□□□ 1.7
COMMD4-221ENST00000567935 SUPT5HO00267 1087 aaKnown RBP25.63■■□□□ 1.69
COMMD4-221ENST00000567935 MROH2BQ7Z745 1585 aa25.59■■□□□ 1.69
COMMD4-221ENST00000567935 CEP164Q9UPV0 1460 aa25.56■■□□□ 1.68
COMMD4-221ENST00000567935 ARHGEF11O15085 1522 aa25.47■■□□□ 1.67
COMMD4-221ENST00000567935 FANCD2Q9BXW9 1451 aa25.46■■□□□ 1.67
COMMD4-221ENST00000567935 RSF1Q96T23 1441 aaPredicted RBP25.37■■□□□ 1.65
COMMD4-221ENST00000567935 TRHP20396 242 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-221ENST00000567935 URB2Q14146 1524 aaKnown RBP25.34■■□□□ 1.65
COMMD4-221ENST00000567935 CYB5RLQ6IPT4 315 aa25.33■■□□□ 1.65
COMMD4-221ENST00000567935 AEBP2Q6ZN18 517 aaPredicted RBP25.32■■□□□ 1.64
COMMD4-221ENST00000567935 CFTRP13569 1480 aa25.23■■□□□ 1.63
COMMD4-221ENST00000567935 WIZO95785 1651 aa25.22■■□□□ 1.63
COMMD4-221ENST00000567935 ZNF608Q9ULD9 1512 aaPredicted RBP25.21■■□□□ 1.63
COMMD4-221ENST00000567935 ARAP1Q96P48 1450 aa25.18■■□□□ 1.62
COMMD4-221ENST00000567935 IFT140Q96RY7 1462 aa25.08■■□□□ 1.6
COMMD4-221ENST00000567935 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
COMMD4-221ENST00000567935 CHD1O14646 1710 aa24.98■■□□□ 1.59
COMMD4-221ENST00000567935 TOPBP1Q92547 1522 aa24.86■■□□□ 1.57
COMMD4-221ENST00000567935 PRDM2Q13029 1718 aa24.84■■□□□ 1.57
COMMD4-221ENST00000567935 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
COMMD4-221ENST00000567935 AQRO60306 1485 aaKnown RBP eCLIP24.83■■□□□ 1.57
COMMD4-221ENST00000567935 FBLN2P98095 1184 aa24.83■■□□□ 1.57
COMMD4-221ENST00000567935 TARBP1Q13395 1621 aaKnown RBP24.72■■□□□ 1.55
COMMD4-221ENST00000567935 CHIC1Q5VXU3 224 aa24.69■■□□□ 1.54
COMMD4-221ENST00000567935 CLASP1Q7Z460 1538 aa24.68■■□□□ 1.54
COMMD4-221ENST00000567935 DNMBPQ6XZF7 1577 aa24.67■■□□□ 1.54
COMMD4-221ENST00000567935 ABCC8Q09428 1581 aa24.66■■□□□ 1.54
COMMD4-221ENST00000567935 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
COMMD4-221ENST00000567935 POLA1P09884 1462 aaPredicted RBP24.56■■□□□ 1.52
COMMD4-221ENST00000567935 SNAPC4Q5SXM2 1469 aa24.55■■□□□ 1.52
COMMD4-221ENST00000567935 SYNJ1O43426 1573 aa24.52■■□□□ 1.52
COMMD4-221ENST00000567935 TDRD9Q8NDG6 1382 aaKnown RBP24.52■■□□□ 1.52
COMMD4-221ENST00000567935 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
COMMD4-221ENST00000567935 GAPVD1Q14C86 1478 aa24.48■■□□□ 1.51
COMMD4-221ENST00000567935 CHMP7Q8WUX9 453 aaPredicted RBP24.46■■□□□ 1.51
COMMD4-221ENST00000567935 ILDR1Q86SU0 546 aaPredicted RBP24.44■■□□□ 1.5
COMMD4-221ENST00000567935 SOGA1O94964 1423 aa24.39■■□□□ 1.5
COMMD4-221ENST00000567935 MAGI1Q96QZ7 1491 aaPredicted RBP24.38■■□□□ 1.49
COMMD4-221ENST00000567935 SYNJ2O15056 1496 aa24.34■■□□□ 1.49
COMMD4-221ENST00000567935 WDR97A6NE52 1622 aa24.32■■□□□ 1.48
COMMD4-221ENST00000567935 GRIN2BQ13224 1484 aa24.3■■□□□ 1.48
COMMD4-221ENST00000567935 ERCC6L2Q5T890 1561 aa24.27■■□□□ 1.48
COMMD4-221ENST00000567935 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
COMMD4-221ENST00000567935 KIF13AQ9H1H9 1805 aa24.21■■□□□ 1.47
COMMD4-221ENST00000567935 KDM4FA0A1W2PPD8 638 aa24.16■■□□□ 1.46
COMMD4-221ENST00000567935 PBRM1Q86U86 1689 aa24.14■■□□□ 1.45
COMMD4-221ENST00000567935 CUX1P39880 1505 aa24.1■■□□□ 1.45
COMMD4-221ENST00000567935 CEP170Q5SW79 1584 aa24.08■■□□□ 1.45
COMMD4-221ENST00000567935 GRIN2AQ12879 1464 aa24■■□□□ 1.43
COMMD4-221ENST00000567935 ABCA5Q8WWZ7 1642 aa23.98■■□□□ 1.43
COMMD4-221ENST00000567935 NUP160Q12769 1436 aa23.97■■□□□ 1.43
COMMD4-221ENST00000567935 SHROOM2Q13796 1616 aa23.96■■□□□ 1.43
COMMD4-221ENST00000567935 FAM69CQ0P6D2 419 aa23.96■■□□□ 1.43
COMMD4-221ENST00000567935 ABCC10Q5T3U5 1492 aa23.94■■□□□ 1.42
COMMD4-221ENST00000567935 WRNQ14191 1432 aaPredicted RBP eCLIP23.92■■□□□ 1.42
COMMD4-221ENST00000567935 KDM6BO15054 1643 aa23.92■■□□□ 1.42
COMMD4-221ENST00000567935 ABCA10Q8WWZ4 1543 aa23.9■■□□□ 1.42
COMMD4-221ENST00000567935 ADAMTS12P58397 1594 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms