RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 NISCHQ9Y2I1 1504 aa43.42■■■■■ 4.54
COMMD4-213ENST00000565834 CCDC180Q9P1Z9 1646 aa38.14■■■■□ 3.7
COMMD4-213ENST00000565834 ZCCHC6Q5VYS8 1495 aaKnown RBP36.4■■■■□ 3.42
COMMD4-213ENST00000565834 ABCC9O60706 1549 aa36.33■■■■□ 3.41
COMMD4-213ENST00000565834 DCAF1Q9Y4B6 1507 aa35.94■■■■□ 3.34
COMMD4-213ENST00000565834 DCAF8L2P0C7V8 631 aa35.91■■■■□ 3.34
COMMD4-213ENST00000565834 MYO15BQ96JP2 1530 aa35.68■■■■□ 3.3
COMMD4-213ENST00000565834 NACADO15069 1562 aa35.58■■■■□ 3.29
COMMD4-213ENST00000565834 RB1CC1Q8TDY2 1594 aa35.38■■■■□ 3.25
COMMD4-213ENST00000565834 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
COMMD4-213ENST00000565834 SCRIBQ14160 1630 aa34.94■■■■□ 3.18
COMMD4-213ENST00000565834 UNC13AQ9UPW8 1703 aa34.67■■■■□ 3.14
COMMD4-213ENST00000565834 BICRAQ9NZM4 1560 aa34.27■■■■□ 3.08
COMMD4-213ENST00000565834 PABPN1Q86U42 306 aaKnown RBP eCLIP34.12■■■■□ 3.05
COMMD4-213ENST00000565834 CECR2Q9BXF3 1484 aa33.73■■■□□ 2.99
COMMD4-213ENST00000565834 BAZ1AQ9NRL2 1556 aaPredicted RBP33.59■■■□□ 2.97
COMMD4-213ENST00000565834 SUPT5HO00267 1087 aaKnown RBP33.52■■■□□ 2.96
COMMD4-213ENST00000565834 MROH2BQ7Z745 1585 aa33.5■■■□□ 2.95
COMMD4-213ENST00000565834 SMARCA4P51532 1647 aa33.49■■■□□ 2.95
COMMD4-213ENST00000565834 RSF1Q96T23 1441 aaPredicted RBP33.49■■■□□ 2.95
COMMD4-213ENST00000565834 EIF4G1Q04637 1599 aaKnown RBP33.29■■■□□ 2.92
COMMD4-213ENST00000565834 WIZO95785 1651 aa33.24■■■□□ 2.91
COMMD4-213ENST00000565834 PEG3Q9GZU2 1588 aa33.1■■■□□ 2.89
COMMD4-213ENST00000565834 SMARCA2P51531 1590 aa33.03■■■□□ 2.88
COMMD4-213ENST00000565834 ATAD2BQ9ULI0 1458 aa33■■■□□ 2.87
COMMD4-213ENST00000565834 TOP2AP11388 1531 aaKnown RBP32.9■■■□□ 2.86
COMMD4-213ENST00000565834 CC2D2AQ9P2K1 1620 aa32.9■■■□□ 2.86
COMMD4-213ENST00000565834 BAZ1BQ9UIG0 1483 aaKnown RBP32.82■■■□□ 2.84
COMMD4-213ENST00000565834 NCAPD3P42695 1498 aa32.8■■■□□ 2.84
COMMD4-213ENST00000565834 HMGXB3Q12766 1538 aa32.77■■■□□ 2.84
COMMD4-213ENST00000565834 CCDC88BA6NC98 1476 aa32.51■■■□□ 2.8
COMMD4-213ENST00000565834 DNAJC5BQ9UF47 199 aa32.43■■■□□ 2.78
COMMD4-213ENST00000565834 CFTRP13569 1480 aa31.96■■■□□ 2.71
COMMD4-213ENST00000565834 CADPSQ9ULU8 1353 aa31.92■■■□□ 2.7
COMMD4-213ENST00000565834 PRDM2Q13029 1718 aa31.88■■■□□ 2.69
COMMD4-213ENST00000565834 CHIC1Q5VXU3 224 aa31.87■■■□□ 2.69
COMMD4-213ENST00000565834 LAMC3Q9Y6N6 1575 aa31.8■■■□□ 2.68
COMMD4-213ENST00000565834 NESP48681 1621 aa31.76■■■□□ 2.67
COMMD4-213ENST00000565834 ABCC8Q09428 1581 aa31.7■■■□□ 2.66
COMMD4-213ENST00000565834 FANCD2Q9BXW9 1451 aa31.58■■■□□ 2.65
COMMD4-213ENST00000565834 TRIM41Q8WV44 630 aa31.57■■■□□ 2.65
COMMD4-213ENST00000565834 WRNQ14191 1432 aaPredicted RBP eCLIP31.56■■■□□ 2.64
COMMD4-213ENST00000565834 PDS5BQ9NTI5 1447 aa31.53■■■□□ 2.64
COMMD4-213ENST00000565834 SYNJ1O43426 1573 aa31.45■■■□□ 2.63
COMMD4-213ENST00000565834 CEP164Q9UPV0 1460 aa31.44■■■□□ 2.62
COMMD4-213ENST00000565834 KIF21AQ7Z4S6 1674 aa31.44■■■□□ 2.62
COMMD4-213ENST00000565834 TOP2BQ02880 1626 aa31.39■■■□□ 2.61
COMMD4-213ENST00000565834 BIVM-ERCC5R4GMW8 1640 aa31.38■■■□□ 2.61
COMMD4-213ENST00000565834 CUX1P39880 1505 aa31.37■■■□□ 2.61
COMMD4-213ENST00000565834 DNMBPQ6XZF7 1577 aa31.26■■■□□ 2.59
COMMD4-213ENST00000565834 ERCC6Q03468 1493 aa31.23■■■□□ 2.59
COMMD4-213ENST00000565834 URB2Q14146 1524 aaKnown RBP31.2■■■□□ 2.58
COMMD4-213ENST00000565834 TOPBP1Q92547 1522 aa31.2■■■□□ 2.58
COMMD4-213ENST00000565834 MRC2Q9UBG0 1479 aa31.16■■■□□ 2.58
COMMD4-213ENST00000565834 FGD5Q6ZNL6 1462 aa31.1■■■□□ 2.57
COMMD4-213ENST00000565834 THOC2Q8NI27 1593 aaKnown RBP31.03■■■□□ 2.56
COMMD4-213ENST00000565834 WDR62O43379 1518 aa31.02■■■□□ 2.56
COMMD4-213ENST00000565834 POLA1P09884 1462 aaPredicted RBP31■■■□□ 2.55
COMMD4-213ENST00000565834 SOGA1O94964 1423 aa30.99■■■□□ 2.55
COMMD4-213ENST00000565834 FAM9AQ8IZU1 332 aaPredicted RBP30.94■■■□□ 2.54
COMMD4-213ENST00000565834 EEA1Q15075 1411 aa30.92■■■□□ 2.54
COMMD4-213ENST00000565834 RUSC2Q8N2Y8 1516 aa30.89■■■□□ 2.54
COMMD4-213ENST00000565834 RAD54L2Q9Y4B4 1467 aa30.87■■■□□ 2.53
COMMD4-213ENST00000565834 ABCA10Q8WWZ4 1543 aa30.83■■■□□ 2.53
COMMD4-213ENST00000565834 CUX2O14529 1486 aa30.81■■■□□ 2.52
COMMD4-213ENST00000565834 WDR97A6NE52 1622 aa30.81■■■□□ 2.52
COMMD4-213ENST00000565834 KIF27Q86VH2 1401 aa30.8■■■□□ 2.52
COMMD4-213ENST00000565834 TARBP1Q13395 1621 aaKnown RBP30.78■■■□□ 2.52
COMMD4-213ENST00000565834 CSRNP3Q8WYN3 585 aa30.73■■■□□ 2.51
COMMD4-213ENST00000565834 IFT140Q96RY7 1462 aa30.71■■■□□ 2.51
COMMD4-213ENST00000565834 ABCA5Q8WWZ7 1642 aa30.63■■■□□ 2.49
COMMD4-213ENST00000565834 LOC105371045A0A1W2PR82 267 aa30.6■■■□□ 2.49
COMMD4-213ENST00000565834 TDRD9Q8NDG6 1382 aaKnown RBP30.6■■■□□ 2.49
COMMD4-213ENST00000565834 GAPVD1Q14C86 1478 aa30.56■■■□□ 2.48
COMMD4-213ENST00000565834 KIF21BO75037 1637 aa30.56■■■□□ 2.48
COMMD4-213ENST00000565834 IGF1RP08069 1367 aa30.53■■■□□ 2.48
COMMD4-213ENST00000565834 ZNF608Q9ULD9 1512 aaPredicted RBP30.52■■■□□ 2.48
COMMD4-213ENST00000565834 EHMT2Q96KQ7 1210 aa30.5■■■□□ 2.47
COMMD4-213ENST00000565834 AQRO60306 1485 aaKnown RBP eCLIP30.48■■■□□ 2.47
COMMD4-213ENST00000565834 PRXQ9BXM0 1461 aa30.48■■■□□ 2.47
COMMD4-213ENST00000565834 ERICH3Q5RHP9 1530 aa30.48■■■□□ 2.47
COMMD4-213ENST00000565834 PBRM1Q86U86 1689 aa30.48■■■□□ 2.47
COMMD4-213ENST00000565834 EIF4G3O43432 1585 aaKnown RBP30.47■■■□□ 2.47
COMMD4-213ENST00000565834 GOLGA3Q08378 1498 aa30.46■■■□□ 2.47
COMMD4-213ENST00000565834 CUL7Q14999 1698 aa30.44■■■□□ 2.46
COMMD4-213ENST00000565834 RAPGEF2Q9Y4G8 1499 aa30.4■■■□□ 2.46
COMMD4-213ENST00000565834 CARMIL1Q5VZK9 1371 aa30.39■■■□□ 2.46
COMMD4-213ENST00000565834 GRIN2BQ13224 1484 aa30.39■■■□□ 2.46
COMMD4-213ENST00000565834 UBTFP17480 764 aaKnown RBP30.3■■■□□ 2.44
COMMD4-213ENST00000565834 ADAMTS12P58397 1594 aa30.27■■■□□ 2.44
COMMD4-213ENST00000565834 TNIKQ9UKE5 1360 aa30.26■■■□□ 2.43
COMMD4-213ENST00000565834 SNAPC4Q5SXM2 1469 aa30.23■■■□□ 2.43
COMMD4-213ENST00000565834 FHAD1B1AJZ9 1412 aa30.23■■■□□ 2.43
COMMD4-213ENST00000565834 MAGI1Q96QZ7 1491 aaPredicted RBP30.2■■■□□ 2.43
COMMD4-213ENST00000565834 SYNJ2O15056 1496 aa30.08■■■□□ 2.41
COMMD4-213ENST00000565834 CEP162Q5TB80 1403 aa30.07■■■□□ 2.4
COMMD4-213ENST00000565834 CTTNBP2Q8WZ74 1663 aa30.05■■■□□ 2.4
COMMD4-213ENST00000565834 GRIN2AQ12879 1464 aa30.02■■■□□ 2.4
COMMD4-213ENST00000565834 CHMP7Q8WUX9 453 aaPredicted RBP29.98■■■□□ 2.39
COMMD4-213ENST00000565834 CLIP1P30622 1438 aa29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms