RNA–Protein interactions for RNA: ENST00000641711.1

PHGDH-224, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 712 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-224ENST00000641711 NISCHQ9Y2I1 1504 aa24.24■■□□□ 1.47
PHGDH-224ENST00000641711 CCDC180Q9P1Z9 1646 aa21.6■■□□□ 1.05
PHGDH-224ENST00000641711 ABCC9O60706 1549 aa20.69■□□□□ 0.9
PHGDH-224ENST00000641711 ZCCHC6Q5VYS8 1495 aaKnown RBP20.27■□□□□ 0.84
PHGDH-224ENST00000641711 MYO15BQ96JP2 1530 aa20.23■□□□□ 0.83
PHGDH-224ENST00000641711 NACADO15069 1562 aa20.21■□□□□ 0.83
PHGDH-224ENST00000641711 DCAF1Q9Y4B6 1507 aa20.19■□□□□ 0.82
PHGDH-224ENST00000641711 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
PHGDH-224ENST00000641711 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
PHGDH-224ENST00000641711 UNC13AQ9UPW8 1703 aa19.68■□□□□ 0.74
PHGDH-224ENST00000641711 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
PHGDH-224ENST00000641711 SHROOM4Q9ULL8 1493 aa19.5■□□□□ 0.71
PHGDH-224ENST00000641711 BICRAQ9NZM4 1560 aa19.48■□□□□ 0.71
PHGDH-224ENST00000641711 PABPN1Q86U42 306 aaKnown RBP eCLIP19.26■□□□□ 0.67
PHGDH-224ENST00000641711 AEBP2Q6ZN18 517 aaPredicted RBP18.96■□□□□ 0.63
PHGDH-224ENST00000641711 EIF4G1Q04637 1599 aaKnown RBP18.96■□□□□ 0.63
PHGDH-224ENST00000641711 BAZ1AQ9NRL2 1556 aaPredicted RBP18.83■□□□□ 0.6
PHGDH-224ENST00000641711 CC2D2AQ9P2K1 1620 aa18.81■□□□□ 0.6
PHGDH-224ENST00000641711 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
PHGDH-224ENST00000641711 CECR2Q9BXF3 1484 aa18.76■□□□□ 0.59
PHGDH-224ENST00000641711 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
PHGDH-224ENST00000641711 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
PHGDH-224ENST00000641711 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
PHGDH-224ENST00000641711 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
PHGDH-224ENST00000641711 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
PHGDH-224ENST00000641711 NCAPD3P42695 1498 aa18.59■□□□□ 0.57
PHGDH-224ENST00000641711 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
PHGDH-224ENST00000641711 CHIC1Q5VXU3 224 aa18.52■□□□□ 0.56
PHGDH-224ENST00000641711 RSF1Q96T23 1441 aaPredicted RBP18.49■□□□□ 0.55
PHGDH-224ENST00000641711 BAZ1BQ9UIG0 1483 aaKnown RBP18.46■□□□□ 0.55
PHGDH-224ENST00000641711 WIZO95785 1651 aa18.44■□□□□ 0.54
PHGDH-224ENST00000641711 TOP2AP11388 1531 aaKnown RBP18.34■□□□□ 0.53
PHGDH-224ENST00000641711 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
PHGDH-224ENST00000641711 CCDC88BA6NC98 1476 aa18.02■□□□□ 0.48
PHGDH-224ENST00000641711 CADPSQ9ULU8 1353 aa18.02■□□□□ 0.47
PHGDH-224ENST00000641711 SUPT5HO00267 1087 aaKnown RBP18■□□□□ 0.47
PHGDH-224ENST00000641711 PRDM2Q13029 1718 aa18■□□□□ 0.47
PHGDH-224ENST00000641711 CFTRP13569 1480 aa17.99■□□□□ 0.47
PHGDH-224ENST00000641711 NESP48681 1621 aa17.95■□□□□ 0.46
PHGDH-224ENST00000641711 PDS5BQ9NTI5 1447 aa17.94■□□□□ 0.46
PHGDH-224ENST00000641711 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
PHGDH-224ENST00000641711 KIF21AQ7Z4S6 1674 aa17.86■□□□□ 0.45
PHGDH-224ENST00000641711 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
PHGDH-224ENST00000641711 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
PHGDH-224ENST00000641711 THOC2Q8NI27 1593 aaKnown RBP17.79■□□□□ 0.44
PHGDH-224ENST00000641711 MRC2Q9UBG0 1479 aa17.74■□□□□ 0.43
PHGDH-224ENST00000641711 CUX2O14529 1486 aa17.73■□□□□ 0.43
PHGDH-224ENST00000641711 WDR62O43379 1518 aa17.71■□□□□ 0.43
PHGDH-224ENST00000641711 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
PHGDH-224ENST00000641711 URB2Q14146 1524 aaKnown RBP17.61■□□□□ 0.41
PHGDH-224ENST00000641711 DNMBPQ6XZF7 1577 aa17.61■□□□□ 0.41
PHGDH-224ENST00000641711 TOPBP1Q92547 1522 aa17.57■□□□□ 0.4
PHGDH-224ENST00000641711 CUX1P39880 1505 aa17.47■□□□□ 0.39
PHGDH-224ENST00000641711 BIVM-ERCC5R4GMW8 1640 aa17.47■□□□□ 0.39
PHGDH-224ENST00000641711 WRNQ14191 1432 aaPredicted RBP eCLIP17.46■□□□□ 0.39
PHGDH-224ENST00000641711 TOP2BQ02880 1626 aa17.45■□□□□ 0.38
PHGDH-224ENST00000641711 IFT140Q96RY7 1462 aa17.44■□□□□ 0.38
PHGDH-224ENST00000641711 POLA1P09884 1462 aaPredicted RBP17.42■□□□□ 0.38
PHGDH-224ENST00000641711 WDR97A6NE52 1622 aa17.4■□□□□ 0.38
PHGDH-224ENST00000641711 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
PHGDH-224ENST00000641711 SYNJ1O43426 1573 aa17.39■□□□□ 0.37
PHGDH-224ENST00000641711 TARBP1Q13395 1621 aaKnown RBP17.38■□□□□ 0.37
PHGDH-224ENST00000641711 SOGA1O94964 1423 aa17.31■□□□□ 0.36
PHGDH-224ENST00000641711 ABCA10Q8WWZ4 1543 aa17.3■□□□□ 0.36
PHGDH-224ENST00000641711 EIF4G3O43432 1585 aaKnown RBP17.28■□□□□ 0.36
PHGDH-224ENST00000641711 RAD54L2Q9Y4B4 1467 aa17.25■□□□□ 0.35
PHGDH-224ENST00000641711 ZNF608Q9ULD9 1512 aaPredicted RBP17.23■□□□□ 0.35
PHGDH-224ENST00000641711 ABCA5Q8WWZ7 1642 aa17.22■□□□□ 0.35
PHGDH-224ENST00000641711 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
PHGDH-224ENST00000641711 GRIN2BQ13224 1484 aa17.15■□□□□ 0.34
PHGDH-224ENST00000641711 GAPVD1Q14C86 1478 aa17.15■□□□□ 0.34
PHGDH-224ENST00000641711 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.332e-7■□□□□ 9.8
PHGDH-224ENST00000641711 MAGI1Q96QZ7 1491 aaPredicted RBP17.13■□□□□ 0.33
PHGDH-224ENST00000641711 TDRD9Q8NDG6 1382 aaKnown RBP17.13■□□□□ 0.33
PHGDH-224ENST00000641711 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
PHGDH-224ENST00000641711 KIF27Q86VH2 1401 aa17.1■□□□□ 0.33
PHGDH-224ENST00000641711 TRIM41Q8WV44 630 aa17.07■□□□□ 0.32
PHGDH-224ENST00000641711 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
PHGDH-224ENST00000641711 ADAMTS12P58397 1594 aa17.04■□□□□ 0.32
PHGDH-224ENST00000641711 CUL7Q14999 1698 aa17.04■□□□□ 0.32
PHGDH-224ENST00000641711 SYNJ2O15056 1496 aa17.02■□□□□ 0.32
PHGDH-224ENST00000641711 CHD1O14646 1710 aa17.01■□□□□ 0.31
PHGDH-224ENST00000641711 FHAD1B1AJZ9 1412 aa16.99■□□□□ 0.31
PHGDH-224ENST00000641711 EEA1Q15075 1411 aa16.98■□□□□ 0.31
PHGDH-224ENST00000641711 IGF1RP08069 1367 aa16.93■□□□□ 0.3
PHGDH-224ENST00000641711 GRIN2AQ12879 1464 aa16.93■□□□□ 0.3
PHGDH-224ENST00000641711 OSCARQ8IYS5 282 aa16.89■□□□□ 0.29
PHGDH-224ENST00000641711 CHMP7Q8WUX9 453 aaPredicted RBP16.89■□□□□ 0.29
PHGDH-224ENST00000641711 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
PHGDH-224ENST00000641711 NUP160Q12769 1436 aa16.86■□□□□ 0.29
PHGDH-224ENST00000641711 CLASP1Q7Z460 1538 aa16.86■□□□□ 0.29
PHGDH-224ENST00000641711 RUSC2Q8N2Y8 1516 aa16.86■□□□□ 0.29
PHGDH-224ENST00000641711 FBLN2P98095 1184 aa16.83■□□□□ 0.28
PHGDH-224ENST00000641711 RAPGEF2Q9Y4G8 1499 aa16.82■□□□□ 0.28
PHGDH-224ENST00000641711 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
PHGDH-224ENST00000641711 PRXQ9BXM0 1461 aa16.81■□□□□ 0.28
PHGDH-224ENST00000641711 DNAJC5Q9H3Z4 198 aa16.79■□□□□ 0.28
PHGDH-224ENST00000641711 KIF21BO75037 1637 aa16.77■□□□□ 0.27
PHGDH-224ENST00000641711 CSRNP3Q8WYN3 585 aa16.76■□□□□ 0.27
PHGDH-224ENST00000641711 SHROOM2Q13796 1616 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms