Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 HNRNPC-213ENST00000554891 644 ntTSL 514.23□□□□□ -0.136e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-232ENST00000557442 1308 ntTSL 214.15□□□□□ -0.146e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-225ENST00000556513 1403 ntTSL 5 BASIC13.8□□□□□ -0.26e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-208ENST00000553753 1790 ntTSL 5 BASIC13.67□□□□□ -0.226e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-209ENST00000554383 1039 ntTSL 513.53□□□□□ -0.246e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-218ENST00000555215 781 ntTSL 513.53□□□□□ -0.246e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-219ENST00000555309 1714 ntTSL 5 BASIC13.42□□□□□ -0.266e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-228ENST00000557033 760 ntTSL 313.06□□□□□ -0.326e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-224ENST00000556226 629 ntTSL 513.06□□□□□ -0.326e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-216ENST00000555137 789 ntTSL 312.91□□□□□ -0.346e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-223ENST00000556142 1599 ntTSL 5 BASIC12.51□□□□□ -0.416e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-207ENST00000553614 604 ntTSL 512.06□□□□□ -0.486e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.516e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-212ENST00000554539 748 ntTSL 511.4□□□□□ -0.586e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC10.79□□□□□ -0.681e-9■■□□□ 14.2
U2AF1Q01081 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC10.26□□□□□ -0.776e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC9.8□□□□□ -0.846e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-215ENST00000555127 929 ntTSL 28.83□□□□□ -16e-11■■□□□ 14.2
U2AF1Q01081 HNRNPC-233ENST00000557768 599 ntTSL 37.1□□□□□ -1.276e-11■■□□□ 14.2
U2AF1Q01081 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.146e-7■■□□□ 14.2
U2AF1Q01081 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC28.69■■■□□ 2.181e-10■■□□□ 14.2
U2AF1Q01081 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.041e-10■■□□□ 14.2
U2AF1Q01081 C22orf39-204ENST00000509549 2979 ntTSL 216.14■□□□□ 0.171e-10■■□□□ 14.2
U2AF1Q01081 HIRA-203ENST00000452818 453 ntTSL 514.93□□□□□ -0.021e-10■■□□□ 14.2
U2AF1Q01081 HIRA-204ENST00000464189 560 ntTSL 414.93□□□□□ -0.021e-10■■□□□ 14.2
U2AF1Q01081 KEL-208ENST00000479768 1856 ntTSL 517.81■□□□□ 0.442e-7■■□□□ 14.2
U2AF1Q01081 KEL-201ENST00000355265 2812 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.642e-7■■□□□ 14.2
U2AF1Q01081 HNRNPH1-231ENST00000519033 832 ntTSL 322.8■■□□□ 1.242e-6■■□□□ 14.2
U2AF1Q01081 CLMN-209ENST00000557696 746 ntTSL 213.07□□□□□ -0.326e-10■■□□□ 14.2
U2AF1Q01081 CLMN-207ENST00000556454 3023 ntTSL 212.44□□□□□ -0.426e-10■■□□□ 14.2
U2AF1Q01081 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.26e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-211ENST00000488497 3557 ntTSL 1 (best)8.5□□□□□ -1.054e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.484e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-206ENST00000470400 881 ntTSL 35.71□□□□□ -1.54e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.62□□□□□ -1.514e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-201ENST00000461591 1580 ntTSL 25.29□□□□□ -1.564e-10■■□□□ 14.2
U2AF1Q01081 U2SURP-203ENST00000463563 4364 ntTSL 23.15□□□□□ -1.94e-10■■□□□ 14.2
U2AF1Q01081 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.933e-6■■□□□ 14.2
U2AF1Q01081 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC10.01□□□□□ -0.817e-8■■□□□ 14.2
U2AF1Q01081 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.057e-8■■□□□ 14.2
U2AF1Q01081 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.36■■□□□ 1.331e-9■■□□□ 14.2
U2AF1Q01081 TXNRD1-220ENST00000529751 557 ntTSL 423.28■■□□□ 1.322e-17■■□□□ 14.2
U2AF1Q01081 TXNRD1-206ENST00000524698 1933 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.12e-17■■□□□ 14.2
U2AF1Q01081 TXNRD1-215ENST00000526950 1847 ntTSL 5 BASIC14.35□□□□□ -0.112e-17■■□□□ 14.2
U2AF1Q01081 TXNRD1-219ENST00000529546 2018 ntTSL 2 BASIC10.14□□□□□ -0.792e-17■■□□□ 14.2
U2AF1Q01081 MTG1-204ENST00000473735 2212 ntTSL 528.37■■■□□ 2.131e-19■■□□□ 14.2
U2AF1Q01081 SPPL2B-205ENST00000589515 1733 ntTSL 527.23■■□□□ 1.951e-10■■□□□ 14.2
U2AF1Q01081 LRCH3-208ENST00000443727 611 ntTSL 426.88■■□□□ 1.892e-7■■□□□ 14.2
U2AF1Q01081 BTNL9-205ENST00000509395 611 ntTSL 426.12■■□□□ 1.772e-7■■□□□ 14.2
U2AF1Q01081 MTG1-207ENST00000495014 871 ntTSL 325.3■■□□□ 1.641e-19■■□□□ 14.2
U2AF1Q01081 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.541e-19■■□□□ 14.2
U2AF1Q01081 BTNL9-207ENST00000511589 571 ntTSL 424.49■■□□□ 1.512e-7■■□□□ 14.2
U2AF1Q01081 WDR13-206ENST00000479279 2486 ntTSL 1 (best)24.33■■□□□ 1.482e-7■■□□□ 14.2
U2AF1Q01081 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC24.23■■□□□ 1.471e-19■■□□□ 14.2
U2AF1Q01081 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.442e-7■■□□□ 14.2
U2AF1Q01081 SPPL2B-213ENST00000621568 1017 ntTSL 523.93■■□□□ 1.421e-10■■□□□ 14.2
U2AF1Q01081 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.322e-7■■□□□ 14.2
U2AF1Q01081 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.311e-19■■□□□ 14.2
U2AF1Q01081 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.172e-7■■□□□ 14.2
U2AF1Q01081 MTG1-202ENST00000432508 953 ntTSL 222.33■■□□□ 1.171e-19■■□□□ 14.2
U2AF1Q01081 SPPL2B-208ENST00000612623 495 ntTSL 522.27■■□□□ 1.161e-10■■□□□ 14.2
U2AF1Q01081 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.11e-10■■□□□ 14.2
U2AF1Q01081 MSH5-SAPCD1-206ENST00000491552 706 ntTSL 321.78■■□□□ 1.081e-10■■□□□ 14.2
U2AF1Q01081 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.942e-7■■□□□ 14.2
U2AF1Q01081 MSH5-SAPCD1-208ENST00000498473 2216 ntAPPRIS ALT2 TSL 1 (best)20.66■□□□□ 0.91e-10■■□□□ 14.2
U2AF1Q01081 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.862e-7■■□□□ 14.2
U2AF1Q01081 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.852e-7■■□□□ 14.2
U2AF1Q01081 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.791e-10■■□□□ 14.2
U2AF1Q01081 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.651e-10■■□□□ 14.2
U2AF1Q01081 WDR13-207ENST00000482760 562 ntTSL 318.39■□□□□ 0.532e-7■■□□□ 14.2
U2AF1Q01081 MTG1-203ENST00000460848 2730 ntTSL 217.95■□□□□ 0.461e-19■■□□□ 14.2
U2AF1Q01081 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.371e-10■■□□□ 14.2
U2AF1Q01081 MSH5-216ENST00000484309 857 ntTSL 516.46■□□□□ 0.231e-10■■□□□ 14.2
U2AF1Q01081 MSH5-SAPCD1-205ENST00000476085 950 ntAPPRIS ALT2 TSL 216.4■□□□□ 0.221e-10■■□□□ 14.2
U2AF1Q01081 UVSSA-204ENST00000505716 549 ntTSL 314.76□□□□□ -0.052e-7■■□□□ 14.2
U2AF1Q01081 SLC7A5-203ENST00000565644 3983 ntTSL 1 (best) BASIC14.69□□□□□ -0.062e-7■■□□□ 14.2
U2AF1Q01081 MTG1-206ENST00000492266 413 ntTSL 214.21□□□□□ -0.131e-19■■□□□ 14.2
U2AF1Q01081 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.442e-7■■□□□ 14.2
U2AF1Q01081 MSH5-205ENST00000395853 2704 ntTSL 2 BASIC10.5□□□□□ -0.731e-10■■□□□ 14.2
U2AF1Q01081 PIK3CB-203ENST00000462294 542 ntTSL 56.46□□□□□ -1.382e-7■■□□□ 14.2
U2AF1Q01081 EZH2-210ENST00000498186 1876 ntTSL 232.34■■■□□ 2.771e-6■■□□□ 14.2
U2AF1Q01081 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.081e-7■■□□□ 14.1
U2AF1Q01081 ZFC3H1-212ENST00000552994 7597 ntTSL 1 (best)15.23■□□□□ 0.031e-7■■□□□ 14.1
U2AF1Q01081 ZFC3H1-209ENST00000550963 845 ntTSL 56.51□□□□□ -1.371e-7■■□□□ 14.1
U2AF1Q01081 CHPT1-203ENST00000546873 624 ntTSL 39.09□□□□□ -0.958e-7■■□□□ 14.1
U2AF1Q01081 FNDC3B-207ENST00000469491 2916 ntTSL 222.47■■□□□ 1.194e-10■■□□□ 14.1
U2AF1Q01081 FAM178B-205ENST00000494172 592 ntTSL 324.08■■□□□ 1.453e-6■■□□□ 14.1
U2AF1Q01081 RAD21-209ENST00000523547 908 ntTSL 330.3■■■□□ 2.441e-12■■□□□ 14.1
U2AF1Q01081 RAD21-208ENST00000522699 548 ntTSL 322.84■■□□□ 1.251e-12■■□□□ 14.1
U2AF1Q01081 RAD21-202ENST00000517485 874 ntTSL 320.11■□□□□ 0.811e-12■■□□□ 14.1
U2AF1Q01081 RAD21-206ENST00000519837 515 ntTSL 413.78□□□□□ -0.21e-12■■□□□ 14.1
U2AF1Q01081 RAD21-207ENST00000520992 831 ntTSL 46.6□□□□□ -1.351e-12■■□□□ 14.1
U2AF1Q01081 RAD21-205ENST00000519469 549 ntTSL 25.92□□□□□ -1.461e-12■■□□□ 14.1
U2AF1Q01081 KIAA0232-205ENST00000508423 700 ntTSL 228.93■■■□□ 2.224e-6■■□□□ 14.1
U2AF1Q01081 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.054e-6■■□□□ 14.1
U2AF1Q01081 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.134e-6■■□□□ 14.1
U2AF1Q01081 KIAA0232-204ENST00000503278 563 ntTSL 46.29□□□□□ -1.44e-6■■□□□ 14.1
U2AF1Q01081 HAUS3-205ENST00000514395 580 ntTSL 429.83■■■□□ 2.371e-6■■□□□ 14.1
U2AF1Q01081 POLN-213ENST00000515357 2183 ntTSL 228.48■■■□□ 2.151e-6■■□□□ 14.1
U2AF1Q01081 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.051e-6■■□□□ 14.1
Retrieved 100 of 10,096 protein–RNA pairs in 56.9 ms