RNA–Protein interactions for RNA: ENST00000612404.4

SREK1-216, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 1 (best) BASIC

Gene SREK1, Length 2,128 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-216ENST00000612404 NISCHQ9Y2I1 1504 aa40.64■■■■■ 4.1
SREK1-216ENST00000612404 CCDC180Q9P1Z9 1646 aa35.65■■■■□ 3.3
SREK1-216ENST00000612404 ABCC9O60706 1549 aa34.15■■■■□ 3.06
SREK1-216ENST00000612404 ZCCHC6Q5VYS8 1495 aaKnown RBP34.04■■■■□ 3.04
SREK1-216ENST00000612404 DCAF8L2P0C7V8 631 aa33.8■■■■□ 3
SREK1-216ENST00000612404 DCAF1Q9Y4B6 1507 aa33.57■■■□□ 2.97
SREK1-216ENST00000612404 MYO15BQ96JP2 1530 aa33.35■■■□□ 2.93
SREK1-216ENST00000612404 NACADO15069 1562 aa33.31■■■□□ 2.92
SREK1-216ENST00000612404 RB1CC1Q8TDY2 1594 aa33.15■■■□□ 2.9
SREK1-216ENST00000612404 SHROOM4Q9ULL8 1493 aa32.9■■■□□ 2.86
SREK1-216ENST00000612404 SCRIBQ14160 1630 aa32.75■■■□□ 2.83
SREK1-216ENST00000612404 UNC13AQ9UPW8 1703 aa32.44■■■□□ 2.78
SREK1-216ENST00000612404 PABPN1Q86U42 306 aaKnown RBP eCLIP32.12■■■□□ 2.73
SREK1-216ENST00000612404 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
SREK1-216ENST00000612404 CECR2Q9BXF3 1484 aa31.62■■■□□ 2.65
SREK1-216ENST00000612404 SUPT5HO00267 1087 aaKnown RBP31.44■■■□□ 2.62
SREK1-216ENST00000612404 BAZ1AQ9NRL2 1556 aaPredicted RBP31.43■■■□□ 2.62
SREK1-216ENST00000612404 MROH2BQ7Z745 1585 aa31.38■■■□□ 2.61
SREK1-216ENST00000612404 RSF1Q96T23 1441 aaPredicted RBP31.35■■■□□ 2.61
SREK1-216ENST00000612404 SMARCA4P51532 1647 aa31.34■■■□□ 2.61
SREK1-216ENST00000612404 EIF4G1Q04637 1599 aaKnown RBP31.22■■■□□ 2.59
SREK1-216ENST00000612404 WIZO95785 1651 aa31.11■■■□□ 2.57
SREK1-216ENST00000612404 PEG3Q9GZU2 1588 aa30.95■■■□□ 2.55
SREK1-216ENST00000612404 ATAD2BQ9ULI0 1458 aa30.93■■■□□ 2.54
SREK1-216ENST00000612404 SMARCA2P51531 1590 aa30.92■■■□□ 2.54
SREK1-216ENST00000612404 CC2D2AQ9P2K1 1620 aa30.87■■■□□ 2.53
SREK1-216ENST00000612404 TOP2AP11388 1531 aaKnown RBP30.78■■■□□ 2.52
SREK1-216ENST00000612404 BAZ1BQ9UIG0 1483 aaKnown RBP30.76■■■□□ 2.51
SREK1-216ENST00000612404 NCAPD3P42695 1498 aa30.73■■■□□ 2.51
SREK1-216ENST00000612404 HMGXB3Q12766 1538 aa30.66■■■□□ 2.5
SREK1-216ENST00000612404 DNAJC5BQ9UF47 199 aa30.5■■■□□ 2.47
SREK1-216ENST00000612404 CCDC88BA6NC98 1476 aa30.45■■■□□ 2.47
SREK1-216ENST00000612404 CADPSQ9ULU8 1353 aa29.94■■■□□ 2.38
SREK1-216ENST00000612404 CFTRP13569 1480 aa29.94■■■□□ 2.38
SREK1-216ENST00000612404 NESP48681 1621 aa29.82■■■□□ 2.36
SREK1-216ENST00000612404 CHIC1Q5VXU3 224 aa29.81■■■□□ 2.36
SREK1-216ENST00000612404 LAMC3Q9Y6N6 1575 aa29.78■■■□□ 2.36
SREK1-216ENST00000612404 PRDM2Q13029 1718 aa29.76■■■□□ 2.35
SREK1-216ENST00000612404 ABCC8Q09428 1581 aa29.69■■■□□ 2.34
SREK1-216ENST00000612404 FANCD2Q9BXW9 1451 aa29.61■■■□□ 2.33
SREK1-216ENST00000612404 TRIM41Q8WV44 630 aa29.59■■■□□ 2.33
SREK1-216ENST00000612404 PDS5BQ9NTI5 1447 aa29.59■■■□□ 2.33
SREK1-216ENST00000612404 WRNQ14191 1432 aaPredicted RBP eCLIP29.55■■■□□ 2.32
SREK1-216ENST00000612404 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
SREK1-216ENST00000612404 KIF21AQ7Z4S6 1674 aa29.46■■■□□ 2.31
SREK1-216ENST00000612404 SYNJ1O43426 1573 aa29.43■■■□□ 2.3
SREK1-216ENST00000612404 CUX1P39880 1505 aa29.38■■■□□ 2.29
SREK1-216ENST00000612404 ERCC6Q03468 1493 aa29.36■■■□□ 2.29
SREK1-216ENST00000612404 TOP2BQ02880 1626 aa29.35■■■□□ 2.29
SREK1-216ENST00000612404 BIVM-ERCC5R4GMW8 1640 aa29.31■■■□□ 2.28
SREK1-216ENST00000612404 DNMBPQ6XZF7 1577 aa29.26■■■□□ 2.27
SREK1-216ENST00000612404 URB2Q14146 1524 aaKnown RBP29.26■■■□□ 2.27
SREK1-216ENST00000612404 TOPBP1Q92547 1522 aa29.24■■■□□ 2.27
SREK1-216ENST00000612404 MRC2Q9UBG0 1479 aa29.22■■■□□ 2.27
SREK1-216ENST00000612404 FGD5Q6ZNL6 1462 aa29.14■■■□□ 2.25
SREK1-216ENST00000612404 THOC2Q8NI27 1593 aaKnown RBP29.08■■■□□ 2.25
SREK1-216ENST00000612404 WDR62O43379 1518 aa29.07■■■□□ 2.24
SREK1-216ENST00000612404 POLA1P09884 1462 aaPredicted RBP29.06■■■□□ 2.24
SREK1-216ENST00000612404 FAM9AQ8IZU1 332 aaPredicted RBP29.05■■■□□ 2.24
SREK1-216ENST00000612404 SOGA1O94964 1423 aa29.03■■■□□ 2.24
SREK1-216ENST00000612404 RAD54L2Q9Y4B4 1467 aa28.97■■■□□ 2.23
SREK1-216ENST00000612404 RUSC2Q8N2Y8 1516 aa28.94■■■□□ 2.22
SREK1-216ENST00000612404 CUX2O14529 1486 aa28.88■■■□□ 2.21
SREK1-216ENST00000612404 EEA1Q15075 1411 aa28.88■■■□□ 2.21
SREK1-216ENST00000612404 ABCA10Q8WWZ4 1543 aa28.86■■■□□ 2.21
SREK1-216ENST00000612404 KIF27Q86VH2 1401 aa28.85■■■□□ 2.21
SREK1-216ENST00000612404 TARBP1Q13395 1621 aaKnown RBP28.82■■■□□ 2.2
SREK1-216ENST00000612404 IFT140Q96RY7 1462 aa28.8■■■□□ 2.2
SREK1-216ENST00000612404 WDR97A6NE52 1622 aa28.79■■■□□ 2.2
SREK1-216ENST00000612404 CSRNP3Q8WYN3 585 aa28.78■■■□□ 2.2
SREK1-216ENST00000612404 TDRD9Q8NDG6 1382 aaKnown RBP28.74■■■□□ 2.19
SREK1-216ENST00000612404 EHMT2Q96KQ7 1210 aa28.69■■■□□ 2.18
SREK1-216ENST00000612404 LOC105371045A0A1W2PR82 267 aa28.68■■■□□ 2.18
SREK1-216ENST00000612404 ABCA5Q8WWZ7 1642 aa28.66■■■□□ 2.18
SREK1-216ENST00000612404 GAPVD1Q14C86 1478 aa28.65■■■□□ 2.18
SREK1-216ENST00000612404 ZNF608Q9ULD9 1512 aaPredicted RBP28.65■■■□□ 2.18
SREK1-216ENST00000612404 AQRO60306 1485 aaKnown RBP eCLIP28.63■■■□□ 2.178e-7■□□□□ 8.6
SREK1-216ENST00000612404 IGF1RP08069 1367 aa28.62■■■□□ 2.17
SREK1-216ENST00000612404 EIF4G3O43432 1585 aaKnown RBP28.55■■■□□ 2.16
SREK1-216ENST00000612404 KIF21BO75037 1637 aa28.52■■■□□ 2.16
SREK1-216ENST00000612404 ERICH3Q5RHP9 1530 aa28.52■■■□□ 2.16
SREK1-216ENST00000612404 PBRM1Q86U86 1689 aa28.51■■■□□ 2.15
SREK1-216ENST00000612404 PRXQ9BXM0 1461 aa28.5■■■□□ 2.15
SREK1-216ENST00000612404 GRIN2BQ13224 1484 aa28.49■■■□□ 2.15
SREK1-216ENST00000612404 CARMIL1Q5VZK9 1371 aa28.49■■■□□ 2.15
SREK1-216ENST00000612404 GOLGA3Q08378 1498 aa28.47■■■□□ 2.15
SREK1-216ENST00000612404 RAPGEF2Q9Y4G8 1499 aa28.46■■■□□ 2.15
SREK1-216ENST00000612404 CUL7Q14999 1698 aa28.45■■■□□ 2.14
SREK1-216ENST00000612404 UBTFP17480 764 aaKnown RBP28.42■■■□□ 2.14
SREK1-216ENST00000612404 SNAPC4Q5SXM2 1469 aa28.36■■■□□ 2.13
SREK1-216ENST00000612404 ADAMTS12P58397 1594 aa28.33■■■□□ 2.13
SREK1-216ENST00000612404 FHAD1B1AJZ9 1412 aa28.32■■■□□ 2.12
SREK1-216ENST00000612404 MAGI1Q96QZ7 1491 aaPredicted RBP28.3■■■□□ 2.12
SREK1-216ENST00000612404 TNIKQ9UKE5 1360 aa28.28■■■□□ 2.12
SREK1-216ENST00000612404 FBLN2P98095 1184 aa28.19■■■□□ 2.1
SREK1-216ENST00000612404 CHMP7Q8WUX9 453 aaPredicted RBP28.19■■■□□ 2.1
SREK1-216ENST00000612404 SYNJ2O15056 1496 aa28.19■■■□□ 2.1
SREK1-216ENST00000612404 GRIN2AQ12879 1464 aa28.14■■■□□ 2.09
SREK1-216ENST00000612404 RANGAP1P46060 587 aaPredicted RBP28.12■■■□□ 2.09
SREK1-216ENST00000612404 CEP162Q5TB80 1403 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms